Wall clock time and date at job start Tue Mar 31 2020 03:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00125 * 2 1 4 4 H 1.48494 * 109.47228 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 299.99926 * 3 2 1 6 6 H 1.48500 * 109.47000 * 60.00018 * 3 2 1 7 7 C 1.38815 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99568 * 179.72333 * 7 2 1 9 9 N 1.36929 * 120.00031 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99807 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.49524 * 34.93994 * 10 9 7 12 12 C 1.53035 * 109.50038 * 274.83743 * 10 9 7 13 13 C 1.53038 * 109.53905 * 178.68662 * 12 10 9 14 14 C 1.53186 * 109.31574 * 61.36444 * 13 12 10 15 15 N 1.46933 * 108.77389 * 305.36731 * 14 13 12 16 16 C 1.34780 * 120.62801 * 233.58264 * 15 14 13 17 17 O 1.21283 * 119.99776 * 180.02562 * 16 15 14 18 18 C 1.50698 * 120.00313 * 0.02562 * 16 15 14 19 19 F 1.39904 * 110.43603 * 308.90889 * 18 16 15 20 20 C 1.54804 * 110.49058 * 186.21684 * 18 16 15 21 21 C 1.54992 * 102.09571 * 220.44586 * 20 18 16 22 22 O 1.44379 * 103.49039 * 37.02111 * 21 20 18 23 23 C 1.43745 * 106.97512 * 319.94396 * 22 21 20 24 24 C 1.46919 * 118.73876 * 53.60769 * 15 14 13 25 25 H 0.97000 * 120.00284 * 359.97438 * 1 2 3 26 26 H 0.96999 * 120.00117 * 359.97438 * 9 7 2 27 27 H 1.09007 * 109.46143 * 298.70530 * 12 10 9 28 28 H 1.08997 * 109.46089 * 58.66373 * 12 10 9 29 29 H 1.09006 * 109.49752 * 301.41020 * 13 12 10 30 30 H 1.09000 * 109.52558 * 181.33170 * 13 12 10 31 31 H 1.09003 * 109.59048 * 185.58105 * 14 13 12 32 32 H 1.09006 * 109.58837 * 65.15216 * 14 13 12 33 33 H 1.09006 * 110.90738 * 338.64429 * 20 18 16 34 34 H 1.09000 * 110.90716 * 102.24253 * 20 18 16 35 35 H 1.09004 * 110.61905 * 278.52436 * 21 20 18 36 36 H 1.09001 * 110.75837 * 155.59012 * 21 20 18 37 37 H 1.09001 * 109.87474 * 267.08465 * 23 22 21 38 38 H 1.08994 * 109.87866 * 145.94080 * 23 22 21 39 39 H 1.09002 * 109.58839 * 186.60224 * 24 15 14 40 40 H 1.09000 * 109.59031 * 66.17962 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 -0.0040 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9695 -3.5506 0.5890 12 6 2.4189 -4.0383 -1.4369 13 6 3.2126 -5.3469 -1.4353 14 6 2.3479 -6.4632 -0.8413 15 7 1.8768 -6.0414 0.4851 16 6 2.0794 -6.8211 1.5656 17 8 1.6853 -6.4620 2.6550 18 6 2.7955 -8.1391 1.4203 19 9 2.2190 -8.8980 0.3960 20 6 2.7704 -8.9198 2.7569 21 6 4.2008 -9.5140 2.8128 22 8 5.0223 -8.4678 2.2516 23 6 4.2943 -7.9109 1.1443 24 6 1.1803 -4.7540 0.6109 25 1 -0.4850 0.8400 0.0004 26 1 0.3556 -2.3880 0.0005 27 1 1.5060 -4.1681 -2.0182 28 1 3.0231 -3.2477 -1.8817 29 1 4.1134 -5.2252 -0.8337 30 1 3.4898 -5.6061 -2.4570 31 1 2.9405 -7.3731 -0.7462 32 1 1.4925 -6.6479 -1.4911 33 1 2.5954 -8.2474 3.5968 34 1 2.0211 -9.7110 2.7312 35 1 4.2647 -10.4184 2.2077 36 1 4.4931 -9.7210 3.8423 37 1 4.5820 -8.4140 0.2211 38 1 4.4985 -6.8431 1.0660 39 1 1.0025 -4.5361 1.6640 40 1 0.2297 -4.7992 0.0795 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999997754.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:06 Heat of formation + Delta-G solvation = -130.595134 kcal Electronic energy + Delta-G solvation = -23926.896379 eV Core-core repulsion = 20269.649783 eV Total energy + Delta-G solvation = -3657.246596 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 286.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.27929 -41.53398 -39.90548 -38.74608 -36.30630 -33.97029 -32.99649 -32.74906 -30.90788 -29.71803 -26.86948 -25.92367 -24.46203 -23.48972 -23.32946 -21.54857 -20.41051 -19.23129 -18.83114 -18.06209 -17.90389 -16.96557 -16.63433 -16.23913 -16.22536 -15.77924 -15.72384 -15.42365 -15.31427 -14.99108 -14.77309 -14.68885 -14.15707 -14.00937 -13.72097 -13.30459 -12.98719 -12.91139 -12.75340 -12.63726 -12.37841 -12.23784 -12.11598 -11.98976 -11.87823 -11.75991 -11.68448 -11.11162 -10.94606 -10.78331 -9.86541 -9.06224 -7.97475 -5.27296 1.12709 1.45714 1.47245 1.55908 1.58780 2.54176 2.64579 2.69897 3.05887 3.15091 3.36152 3.66270 3.71347 3.89188 3.95455 3.99656 4.02341 4.12093 4.21111 4.30149 4.39851 4.49146 4.54131 4.66360 4.68150 4.73440 4.76949 4.80887 4.93930 5.01620 5.10192 5.30551 5.35533 5.47327 5.55072 5.61011 6.13451 6.24012 6.74676 7.30343 8.01958 8.26429 9.26028 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.028787 B = 0.003939 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.436248 B = 7107.461574 C = 7207.479173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.072 4.072 3 Si 0.972 3.028 4 H -0.266 1.266 5 H -0.291 1.291 6 H -0.295 1.295 7 C -0.239 4.239 8 H 0.075 0.925 9 N -0.735 5.735 10 C 0.167 3.833 11 H 0.035 0.965 12 C -0.129 4.129 13 C -0.125 4.125 14 C 0.096 3.904 15 N -0.591 5.591 16 C 0.498 3.502 17 O -0.561 6.561 18 C 0.077 3.923 19 F -0.176 7.176 20 C -0.167 4.167 21 C 0.048 3.952 22 O -0.384 6.384 23 C 0.038 3.962 24 C 0.116 3.884 25 H 0.252 0.748 26 H 0.374 0.626 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.107 0.893 31 H 0.110 0.890 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.117 0.883 35 H 0.092 0.908 36 H 0.121 0.879 37 H 0.115 0.885 38 H 0.095 0.905 39 H 0.066 0.934 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.795 -23.030 -1.349 24.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.265 4.265 3 Si 0.801 3.199 4 H -0.191 1.191 5 H -0.218 1.218 6 H -0.222 1.222 7 C -0.371 4.371 8 H 0.093 0.907 9 N -0.375 5.375 10 C 0.058 3.942 11 H 0.053 0.947 12 C -0.169 4.169 13 C -0.163 4.163 14 C -0.025 4.025 15 N -0.323 5.323 16 C 0.284 3.716 17 O -0.439 6.439 18 C 0.055 3.945 19 F -0.157 7.157 20 C -0.205 4.205 21 C -0.028 4.028 22 O -0.303 6.303 23 C -0.040 4.040 24 C -0.007 4.007 25 H 0.060 0.940 26 H 0.206 0.794 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.125 0.875 31 H 0.128 0.872 32 H 0.106 0.894 33 H 0.113 0.887 34 H 0.135 0.865 35 H 0.110 0.890 36 H 0.139 0.861 37 H 0.133 0.867 38 H 0.113 0.887 39 H 0.084 0.916 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.933 -22.669 -0.740 24.377 hybrid contribution -0.767 1.429 -0.050 1.622 sum 8.166 -21.241 -0.790 22.770 Atomic orbital electron populations 1.69818 1.06605 1.26062 1.59390 1.25541 0.96353 1.01009 1.03566 0.85097 0.78256 0.79877 0.76673 1.19056 1.21786 1.22247 1.19583 0.91332 0.84958 1.41223 0.90737 1.42484 1.05487 1.00713 1.88851 1.20629 0.93669 0.84658 0.95230 0.94674 1.22087 1.00090 0.97243 0.97484 1.21931 0.98001 0.93363 1.03009 1.22303 0.99831 0.98586 0.81773 1.48187 1.56010 1.19099 1.08972 1.20999 0.79810 0.86637 0.84129 1.90713 1.51726 1.74279 1.27219 1.22408 0.95050 0.87953 0.89049 1.92921 1.86102 1.76533 1.60097 1.23731 1.01180 1.00968 0.94639 1.23866 0.86458 0.90653 1.01796 1.88939 1.42151 1.52395 1.46804 1.23894 0.85643 1.01731 0.92725 1.21711 0.95345 0.82043 1.01613 0.93961 0.79442 0.92427 0.93099 0.91438 0.87489 0.87201 0.89448 0.88725 0.86481 0.88963 0.86110 0.86681 0.88682 0.91555 0.90855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.37 13.06 21.65 0.28 -59.08 16 2 C -0.07 -4.15 5.50 84.86 0.47 -3.69 16 3 Si 0.97 46.26 29.55 68.60 2.03 48.29 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 5 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 6 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 7 C -0.24 -13.29 9.93 84.04 0.83 -12.46 16 8 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 9 N -0.74 -37.17 5.12 -322.57 -1.65 -38.82 16 10 C 0.17 6.61 2.92 45.07 0.13 6.74 16 11 H 0.04 1.49 8.08 -2.39 -0.02 1.47 16 12 C -0.13 -4.13 5.47 30.62 0.17 -3.96 16 13 C -0.12 -2.68 6.08 30.67 0.19 -2.49 16 14 C 0.10 1.97 5.65 86.36 0.49 2.46 16 15 N -0.59 -16.84 2.97 -818.89 -2.43 -19.28 16 16 C 0.50 14.75 6.61 87.66 0.58 15.33 16 17 O -0.56 -21.09 14.83 -3.04 -0.05 -21.14 16 18 C 0.08 1.63 1.11 -10.55 -0.01 1.61 16 19 F -0.18 -3.34 14.80 44.97 0.67 -2.67 16 20 C -0.17 -3.05 6.37 31.89 0.20 -2.85 16 21 C 0.05 0.67 7.72 72.66 0.56 1.23 16 22 O -0.38 -7.77 11.52 -148.98 -1.72 -9.49 16 23 C 0.04 0.68 5.86 72.35 0.42 1.11 16 24 C 0.12 4.16 5.90 86.36 0.51 4.67 16 25 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 26 H 0.37 20.25 7.80 -92.71 -0.72 19.52 16 27 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 28 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 30 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.11 1.72 4.18 -2.39 -0.01 1.71 16 32 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 33 H 0.09 2.18 6.81 -2.38 -0.02 2.17 16 34 H 0.12 1.69 8.12 -2.39 -0.02 1.67 16 35 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.12 1.42 7.77 -2.39 -0.02 1.40 16 38 H 0.10 1.91 7.68 -2.39 -0.02 1.89 16 39 H 0.07 2.74 7.01 -2.39 -0.02 2.73 16 40 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -70.48 321.04 2.00 -68.48 By element: Atomic # 1 Polarization: 25.68 SS G_CDS: 0.33 Total: 26.01 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: 4.54 Total: 7.70 kcal Atomic # 7 Polarization: -113.38 SS G_CDS: -3.80 Total: -117.18 kcal Atomic # 8 Polarization: -28.86 SS G_CDS: -1.76 Total: -30.63 kcal Atomic # 9 Polarization: -3.34 SS G_CDS: 0.67 Total: -2.67 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -70.48 2.00 -68.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999997754.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.115 kcal (2) G-P(sol) polarization free energy of solvation -70.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds