Wall clock time and date at job start Tue Mar 31 2020 03:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34774 * 120.00177 * 2 1 4 4 O 1.21284 * 119.99801 * 180.02562 * 3 2 1 5 5 C 1.50697 * 120.00219 * 359.97438 * 3 2 1 6 6 H 1.08998 * 112.50788 * 50.32571 * 5 3 2 7 7 C 1.52881 * 113.22390 * 180.20333 * 5 3 2 8 8 C 1.51432 * 84.73053 * 115.23206 * 7 5 3 9 9 C 1.38952 * 145.52664 * 179.97438 * 8 7 5 10 10 C 1.37972 * 120.32148 * 180.02562 * 9 8 7 11 11 C 1.38243 * 120.18065 * 0.02562 * 10 9 8 12 12 C 1.38169 * 119.74405 * 0.13730 * 11 10 9 13 13 C 1.38233 * 120.12968 * 359.70067 * 12 11 10 14 14 C 1.46503 * 119.99706 * 179.97438 * 2 1 3 15 15 C 1.53950 * 113.74159 * 38.74415 * 14 2 1 16 16 N 1.47814 * 86.03406 * 222.08201 * 15 14 2 17 17 C 1.36937 * 134.45597 * 204.64525 * 16 15 14 18 18 H 1.08003 * 120.00337 * 179.86825 * 17 16 15 19 19 C 1.38814 * 119.99999 * 359.86366 * 17 16 15 20 20 N 1.31618 * 119.99822 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00128 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47161 * 90.00023 * 21 19 17 23 23 H 1.48503 * 109.46903 * 209.99965 * 21 19 17 24 24 H 1.48495 * 109.46979 * 329.99995 * 21 19 17 25 25 C 1.47583 * 91.05123 * 24.55035 * 16 15 14 26 26 H 1.08998 * 109.47281 * 90.00151 * 1 2 3 27 27 H 1.08996 * 109.47458 * 210.00568 * 1 2 3 28 28 H 1.09003 * 109.46750 * 330.00447 * 1 2 3 29 29 H 1.08994 * 113.99246 * 229.17919 * 7 5 3 30 30 H 1.09006 * 113.98772 * 1.13780 * 7 5 3 31 31 H 1.08000 * 119.83834 * 0.03460 * 9 8 7 32 32 H 1.08007 * 119.91294 * 179.97438 * 10 9 8 33 33 H 1.08004 * 120.12580 * 179.97438 * 11 10 9 34 34 H 1.08008 * 119.93984 * 179.71433 * 12 11 10 35 35 H 1.09003 * 112.94045 * 170.33457 * 14 2 1 36 36 H 1.09000 * 113.76293 * 336.34291 * 15 14 2 37 37 H 1.08995 * 113.76799 * 107.74102 * 15 14 2 38 38 H 0.96998 * 120.00245 * 179.97438 * 20 19 17 39 39 H 1.09008 * 113.76392 * 221.15131 * 25 16 15 40 40 H 1.09000 * 113.87342 * 89.76699 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1671 -0.0005 5 6 1.3855 2.4723 -0.0006 6 1 0.6198 2.5124 0.7741 7 6 2.3009 3.6968 -0.0055 8 6 1.6991 3.9675 -1.3685 9 6 1.6877 4.8181 -2.4672 10 6 0.8597 4.5592 -3.5400 11 6 0.0341 3.4504 -3.5289 12 6 0.0388 2.6030 -2.4376 13 6 0.8704 2.8596 -1.3636 14 6 2.1974 -1.2688 0.0006 15 6 1.5554 -2.3555 -0.8809 16 7 1.8609 -3.2879 0.2247 17 6 2.0637 -4.6394 0.3111 18 1 2.2807 -5.0929 1.2669 19 6 1.9904 -5.4266 -0.8299 20 7 1.7264 -4.8739 -1.9949 21 14 2.2663 -7.2703 -0.7120 22 1 0.9700 -7.9498 -0.4610 23 1 2.8468 -7.7664 -1.9857 24 1 3.2016 -7.5604 0.4044 25 6 1.8619 -2.1776 1.1970 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3633 0.8901 0.5138 29 1 2.0469 4.4430 0.7473 30 1 3.3637 3.4555 -0.0276 31 1 2.3302 5.6860 -2.4815 32 1 0.8558 5.2250 -4.3904 33 1 -0.6141 3.2488 -4.3690 34 1 -0.6083 1.7384 -2.4236 35 1 3.2669 -1.1421 -0.1680 36 1 0.4886 -2.2098 -1.0506 37 1 2.1090 -2.5618 -1.7969 38 1 1.6755 -5.4238 -2.7923 39 1 2.6598 -2.2424 1.9368 40 1 0.8862 -1.9783 1.6400 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043705120.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:16 Heat of formation + Delta-G solvation = 96.728848 kcal Electronic energy + Delta-G solvation = -22252.715724 eV Core-core repulsion = 19036.095860 eV Total energy + Delta-G solvation = -3216.619864 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.13594 -39.23290 -37.57057 -35.24756 -34.46509 -31.98993 -30.86904 -28.12650 -27.49002 -26.65141 -25.42138 -24.82718 -23.11662 -22.02258 -20.81899 -19.29258 -18.40971 -17.38099 -16.93451 -16.73949 -16.03634 -15.41032 -14.98697 -14.85418 -14.49460 -14.12181 -13.84527 -13.20780 -13.10452 -12.95554 -12.59517 -12.47447 -12.27715 -12.20992 -11.82414 -11.70050 -11.52857 -11.30941 -11.07200 -10.90537 -10.70652 -10.58463 -10.26130 -10.08506 -9.67133 -9.56690 -8.90480 -8.82127 -8.62184 -8.14891 -6.92947 -5.80076 -3.13126 1.18703 1.27989 2.76690 3.24558 3.38856 3.43583 3.45534 3.66511 4.05491 4.29791 4.40599 4.44773 4.70528 4.92587 4.98084 5.03930 5.18424 5.36416 5.43413 5.45504 5.48263 5.51701 5.59205 5.74409 5.77326 5.88108 5.89715 6.01595 6.08567 6.16816 6.27063 6.38873 6.42312 6.56163 6.61662 6.77415 6.86603 7.17990 7.32189 7.50277 7.74622 7.93684 8.41691 9.00749 9.67008 10.53862 11.37123 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.028346 B = 0.003688 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.567558 B = 7589.995982 C = 8099.031674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.594 5.594 3 C 0.525 3.475 4 O -0.541 6.541 5 C -0.065 4.065 6 H 0.116 0.884 7 C -0.061 4.061 8 C -0.118 4.118 9 C -0.102 4.102 10 C -0.116 4.116 11 C -0.120 4.120 12 C -0.081 4.081 13 C -0.120 4.120 14 C 0.090 3.910 15 C 0.158 3.842 16 N -0.606 5.606 17 C -0.224 4.224 18 H 0.082 0.918 19 C -0.006 4.006 20 N -0.920 5.920 21 Si 0.914 3.086 22 H -0.288 1.288 23 H -0.289 1.289 24 H -0.280 1.280 25 C 0.109 3.891 26 H 0.056 0.944 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.097 0.903 30 H 0.112 0.888 31 H 0.117 0.883 32 H 0.124 0.876 33 H 0.128 0.872 34 H 0.122 0.878 35 H 0.115 0.885 36 H 0.032 0.968 37 H 0.076 0.924 38 H 0.255 0.745 39 H 0.047 0.953 40 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.299 19.770 0.878 20.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.325 5.325 3 C 0.312 3.688 4 O -0.418 6.418 5 C -0.086 4.086 6 H 0.134 0.866 7 C -0.098 4.098 8 C -0.118 4.118 9 C -0.120 4.120 10 C -0.134 4.134 11 C -0.138 4.138 12 C -0.099 4.099 13 C -0.121 4.121 14 C -0.014 4.014 15 C 0.032 3.968 16 N -0.333 5.333 17 C -0.351 4.351 18 H 0.100 0.900 19 C -0.203 4.203 20 N -0.567 5.567 21 Si 0.744 3.256 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.205 1.205 25 C -0.018 4.018 26 H 0.075 0.925 27 H 0.097 0.903 28 H 0.084 0.916 29 H 0.116 0.884 30 H 0.130 0.870 31 H 0.135 0.865 32 H 0.142 0.858 33 H 0.145 0.855 34 H 0.140 0.860 35 H 0.133 0.867 36 H 0.049 0.951 37 H 0.094 0.906 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -4.627 19.398 0.737 19.956 hybrid contribution -0.266 -1.123 -0.113 1.159 sum -4.893 18.275 0.624 18.929 Atomic orbital electron populations 1.21811 0.79926 1.02852 1.01958 1.47981 1.06912 1.06113 1.71542 1.20069 0.87730 0.84739 0.76236 1.90667 1.13740 1.87056 1.50373 1.21344 0.98096 0.94054 0.95072 0.86649 1.21747 1.01249 0.94587 0.92213 1.22355 0.97648 0.95724 0.96115 1.20516 0.99463 0.99384 0.92669 1.20973 0.96537 0.97850 0.98034 1.21018 0.99808 0.95034 0.97896 1.20282 0.98258 0.99460 0.91867 1.21219 0.97809 0.97526 0.95506 1.24060 0.98057 0.79784 0.99487 1.22651 0.96831 0.83466 0.93878 1.45705 1.81974 1.02188 1.03401 1.19000 1.41567 0.80213 0.94355 0.90034 1.24802 1.01889 0.98276 0.95329 1.69815 1.54561 1.34310 0.98029 0.86087 0.77770 0.84712 0.76999 1.21571 1.21561 1.20532 1.22964 0.98038 0.87314 0.93526 0.92516 0.90276 0.91643 0.88435 0.86973 0.86471 0.85806 0.85453 0.86006 0.86684 0.95060 0.90555 0.93542 0.93483 0.94689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.01 8.69 59.85 0.52 1.53 16 2 N -0.59 -9.79 3.09 -175.74 -0.54 -10.33 16 3 C 0.53 8.59 7.18 -10.99 -0.08 8.51 16 4 O -0.54 -10.75 15.15 5.55 0.08 -10.67 16 5 C -0.06 -0.79 2.98 -96.59 -0.29 -1.08 16 6 H 0.12 1.11 7.01 -51.93 -0.36 0.74 16 7 C -0.06 -0.68 7.91 -27.58 -0.22 -0.90 16 8 C -0.12 -1.43 7.32 -107.59 -0.79 -2.22 16 9 C -0.10 -1.10 10.05 -39.41 -0.40 -1.50 16 10 C -0.12 -1.15 10.03 -39.68 -0.40 -1.55 16 11 C -0.12 -1.24 10.06 -39.61 -0.40 -1.64 16 12 C -0.08 -0.94 10.04 -39.61 -0.40 -1.34 16 13 C -0.12 -1.50 6.85 -104.55 -0.72 -2.22 16 14 C 0.09 1.82 4.40 -70.14 -0.31 1.51 16 15 C 0.16 3.74 6.97 -2.84 -0.02 3.72 16 16 N -0.61 -15.68 3.70 -177.88 -0.66 -16.34 16 17 C -0.22 -6.32 10.70 -15.06 -0.16 -6.48 16 18 H 0.08 2.21 7.83 -52.48 -0.41 1.80 16 19 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 20 N -0.92 -27.33 11.39 55.49 0.63 -26.70 16 21 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 C 0.11 2.27 8.45 -2.97 -0.03 2.25 16 26 H 0.06 0.71 7.55 -51.93 -0.39 0.32 16 27 H 0.08 1.09 6.35 -51.93 -0.33 0.76 16 28 H 0.06 0.65 6.24 -51.93 -0.32 0.32 16 29 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.11 1.43 7.02 -51.93 -0.36 1.06 16 31 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 32 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 33 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 34 H 0.12 1.28 7.47 -52.48 -0.39 0.88 16 35 H 0.12 2.56 7.22 -51.93 -0.37 2.19 16 36 H 0.03 0.73 6.83 -51.93 -0.35 0.37 16 37 H 0.08 2.04 7.16 -51.93 -0.37 1.67 16 38 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.05 0.97 8.14 -51.92 -0.42 0.54 16 40 H 0.04 0.68 6.84 -51.93 -0.36 0.33 16 LS Contribution 327.61 15.07 4.94 4.94 Total: -1.00 -33.38 327.61 -9.62 -43.01 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -5.28 Total: 0.62 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: -3.77 Total: -1.67 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: -0.57 Total: -53.37 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.08 Total: -10.67 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.38 -9.62 -43.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043705120.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.735 kcal (2) G-P(sol) polarization free energy of solvation -33.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds