Wall clock time and date at job start Tue Mar 31 2020 03:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34774 * 120.00177 * 2 1 4 4 O 1.21284 * 119.99801 * 180.02562 * 3 2 1 5 5 C 1.50697 * 120.00219 * 359.97438 * 3 2 1 6 6 H 1.08998 * 112.50788 * 50.32571 * 5 3 2 7 7 C 1.52881 * 113.22390 * 180.20333 * 5 3 2 8 8 C 1.51432 * 84.73053 * 115.23206 * 7 5 3 9 9 C 1.38952 * 145.52664 * 179.97438 * 8 7 5 10 10 C 1.37972 * 120.32148 * 180.02562 * 9 8 7 11 11 C 1.38243 * 120.18065 * 0.02562 * 10 9 8 12 12 C 1.38169 * 119.74405 * 0.13730 * 11 10 9 13 13 C 1.38233 * 120.12968 * 359.70067 * 12 11 10 14 14 C 1.46503 * 119.99706 * 179.97438 * 2 1 3 15 15 C 1.53950 * 113.74159 * 38.74415 * 14 2 1 16 16 N 1.47814 * 86.03406 * 222.08201 * 15 14 2 17 17 C 1.36937 * 134.45597 * 204.64525 * 16 15 14 18 18 H 1.08003 * 120.00337 * 179.86825 * 17 16 15 19 19 C 1.38814 * 119.99999 * 359.86366 * 17 16 15 20 20 N 1.31618 * 119.99822 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00128 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47161 * 90.00023 * 21 19 17 23 23 H 1.48503 * 109.46903 * 209.99965 * 21 19 17 24 24 H 1.48495 * 109.46979 * 329.99995 * 21 19 17 25 25 C 1.47583 * 91.05123 * 24.55035 * 16 15 14 26 26 H 1.08998 * 109.47281 * 90.00151 * 1 2 3 27 27 H 1.08996 * 109.47458 * 210.00568 * 1 2 3 28 28 H 1.09003 * 109.46750 * 330.00447 * 1 2 3 29 29 H 1.08994 * 113.99246 * 229.17919 * 7 5 3 30 30 H 1.09006 * 113.98772 * 1.13780 * 7 5 3 31 31 H 1.08000 * 119.83834 * 0.03460 * 9 8 7 32 32 H 1.08007 * 119.91294 * 179.97438 * 10 9 8 33 33 H 1.08004 * 120.12580 * 179.97438 * 11 10 9 34 34 H 1.08008 * 119.93984 * 179.71433 * 12 11 10 35 35 H 1.09003 * 112.94045 * 170.33457 * 14 2 1 36 36 H 1.09000 * 113.76293 * 336.34291 * 15 14 2 37 37 H 1.08995 * 113.76799 * 107.74102 * 15 14 2 38 38 H 0.96998 * 120.00245 * 179.97438 * 20 19 17 39 39 H 1.09008 * 113.76392 * 221.15131 * 25 16 15 40 40 H 1.09000 * 113.87342 * 89.76699 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1671 -0.0005 5 6 1.3855 2.4723 -0.0006 6 1 0.6198 2.5124 0.7741 7 6 2.3009 3.6968 -0.0055 8 6 1.6991 3.9675 -1.3685 9 6 1.6877 4.8181 -2.4672 10 6 0.8597 4.5592 -3.5400 11 6 0.0341 3.4504 -3.5289 12 6 0.0388 2.6030 -2.4376 13 6 0.8704 2.8596 -1.3636 14 6 2.1974 -1.2688 0.0006 15 6 1.5554 -2.3555 -0.8809 16 7 1.8609 -3.2879 0.2247 17 6 2.0637 -4.6394 0.3111 18 1 2.2807 -5.0929 1.2669 19 6 1.9904 -5.4266 -0.8299 20 7 1.7264 -4.8739 -1.9949 21 14 2.2663 -7.2703 -0.7120 22 1 0.9700 -7.9498 -0.4610 23 1 2.8468 -7.7664 -1.9857 24 1 3.2016 -7.5604 0.4044 25 6 1.8619 -2.1776 1.1970 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3633 0.8901 0.5138 29 1 2.0469 4.4430 0.7473 30 1 3.3637 3.4555 -0.0276 31 1 2.3302 5.6860 -2.4815 32 1 0.8558 5.2250 -4.3904 33 1 -0.6141 3.2488 -4.3690 34 1 -0.6083 1.7384 -2.4236 35 1 3.2669 -1.1421 -0.1680 36 1 0.4886 -2.2098 -1.0506 37 1 2.1090 -2.5618 -1.7969 38 1 1.6755 -5.4238 -2.7923 39 1 2.6598 -2.2424 1.9368 40 1 0.8862 -1.9783 1.6400 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001043705120.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:15 Heat of formation + Delta-G solvation = 77.002985 kcal Electronic energy + Delta-G solvation = -22253.571101 eV Core-core repulsion = 19036.095860 eV Total energy + Delta-G solvation = -3217.475241 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.15913 -40.58384 -39.09743 -36.16235 -35.96128 -34.01168 -31.69733 -29.83051 -28.55258 -27.89705 -26.65869 -26.59267 -24.68705 -23.08829 -21.86669 -20.69724 -19.76473 -18.91226 -18.46593 -17.75970 -17.47490 -16.87474 -16.35633 -16.08061 -15.73656 -15.45858 -15.34507 -14.62702 -14.09322 -13.99574 -13.83802 -13.72166 -13.48188 -13.29416 -13.27791 -13.17783 -13.00149 -12.78438 -12.71698 -12.55248 -12.10285 -11.98457 -11.87445 -11.56971 -11.46070 -10.92470 -10.89398 -9.74205 -9.59594 -9.49096 -8.98631 -7.94555 -5.29268 0.35146 0.45671 1.44977 1.47451 1.51354 1.56238 1.94379 2.47327 2.83016 3.15024 3.23770 3.37732 3.44691 3.51582 3.63447 3.82556 4.13056 4.21778 4.23613 4.26576 4.35836 4.44834 4.64078 4.66598 4.68491 4.73716 4.83216 4.84844 4.92933 4.99460 5.05630 5.16297 5.17753 5.22169 5.43628 5.48739 5.59698 5.65686 5.76880 5.86475 6.07943 6.42607 6.86512 7.11158 7.55290 8.48518 9.22563 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.028346 B = 0.003688 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.567558 B = 7589.995982 C = 8099.031674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.594 5.594 3 C 0.521 3.479 4 O -0.583 6.583 5 C -0.056 4.056 6 H 0.149 0.851 7 C -0.056 4.056 8 C -0.136 4.136 9 C -0.113 4.113 10 C -0.117 4.117 11 C -0.126 4.126 12 C -0.096 4.096 13 C -0.141 4.141 14 C 0.113 3.887 15 C 0.163 3.837 16 N -0.636 5.636 17 C -0.238 4.238 18 H 0.087 0.913 19 C -0.064 4.064 20 N -0.953 5.953 21 Si 0.983 3.017 22 H -0.282 1.282 23 H -0.294 1.294 24 H -0.268 1.268 25 C 0.117 3.883 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.104 0.896 29 H 0.130 0.870 30 H 0.091 0.909 31 H 0.135 0.865 32 H 0.151 0.849 33 H 0.149 0.851 34 H 0.128 0.872 35 H 0.089 0.911 36 H 0.038 0.962 37 H 0.036 0.964 38 H 0.250 0.750 39 H 0.051 0.949 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.614 21.187 1.603 22.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.325 5.325 3 C 0.311 3.689 4 O -0.464 6.464 5 C -0.076 4.076 6 H 0.166 0.834 7 C -0.093 4.093 8 C -0.136 4.136 9 C -0.131 4.131 10 C -0.135 4.135 11 C -0.144 4.144 12 C -0.114 4.114 13 C -0.141 4.141 14 C 0.008 3.992 15 C 0.036 3.964 16 N -0.364 5.364 17 C -0.366 4.366 18 H 0.105 0.895 19 C -0.258 4.258 20 N -0.602 5.602 21 Si 0.810 3.190 22 H -0.209 1.209 23 H -0.221 1.221 24 H -0.193 1.193 25 C -0.009 4.009 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.123 0.877 29 H 0.148 0.852 30 H 0.109 0.891 31 H 0.153 0.847 32 H 0.168 0.832 33 H 0.167 0.833 34 H 0.146 0.854 35 H 0.107 0.893 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.059 0.941 39 H 0.070 0.930 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.971 20.853 1.493 21.743 hybrid contribution 0.139 -1.466 -0.377 1.520 sum -5.832 19.387 1.117 20.276 Atomic orbital electron populations 1.22041 0.77423 1.04480 1.02844 1.47953 1.08298 1.04788 1.71445 1.20853 0.87467 0.85829 0.74780 1.90648 1.15876 1.87761 1.52091 1.21368 0.98549 0.91423 0.96273 0.83374 1.21768 0.99793 0.94801 0.92966 1.22588 0.97921 0.96206 0.96889 1.20847 0.99849 0.99887 0.92500 1.21357 0.95625 0.97950 0.98530 1.21371 1.00056 0.94853 0.98130 1.20537 0.98550 1.00118 0.92170 1.21330 0.98807 0.98088 0.95913 1.23307 0.96736 0.81263 0.97924 1.22494 0.96725 0.84656 0.92479 1.46018 1.82356 1.02451 1.05542 1.19410 1.40831 0.81690 0.94661 0.89515 1.25671 1.02298 1.02771 0.95021 1.70009 1.56050 1.35616 0.98510 0.85020 0.77852 0.79246 0.76844 1.20911 1.22095 1.19292 1.23061 0.99372 0.85326 0.93135 0.92079 0.90851 0.87736 0.85215 0.89082 0.84682 0.83169 0.83344 0.85366 0.89257 0.94385 0.94602 0.94127 0.93030 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.76 8.69 127.77 1.11 2.87 16 2 N -0.59 -19.11 3.09 -828.32 -2.56 -21.67 16 3 C 0.52 16.72 7.18 87.66 0.63 17.34 16 4 O -0.58 -23.62 15.15 -3.04 -0.05 -23.67 16 5 C -0.06 -1.24 2.98 -14.66 -0.04 -1.29 16 6 H 0.15 2.27 7.01 -2.39 -0.02 2.26 16 7 C -0.06 -1.16 7.91 30.04 0.24 -0.93 16 8 C -0.14 -3.06 7.32 -21.79 -0.16 -3.22 16 9 C -0.11 -2.21 10.05 22.38 0.22 -1.98 16 10 C -0.12 -2.04 10.03 22.21 0.22 -1.82 16 11 C -0.13 -2.35 10.06 22.25 0.22 -2.13 16 12 C -0.10 -2.08 10.04 22.25 0.22 -1.85 16 13 C -0.14 -3.28 6.85 -19.82 -0.14 -3.42 16 14 C 0.11 4.64 4.40 46.75 0.21 4.85 16 15 C 0.16 7.92 6.97 86.44 0.60 8.52 16 16 N -0.64 -33.36 3.70 -716.67 -2.65 -36.01 16 17 C -0.24 -13.54 10.70 84.03 0.90 -12.64 16 18 H 0.09 4.69 7.83 -2.91 -0.02 4.67 16 19 C -0.06 -3.71 5.50 84.86 0.47 -3.24 16 20 N -0.95 -58.14 11.39 21.65 0.25 -57.90 16 21 Si 0.98 46.00 29.55 68.60 2.03 48.03 16 22 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 23 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 24 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 25 C 0.12 4.83 8.45 86.48 0.73 5.56 16 26 H 0.06 1.42 7.55 -2.39 -0.02 1.40 16 27 H 0.07 1.86 6.35 -2.39 -0.02 1.84 16 28 H 0.10 1.68 6.24 -2.39 -0.01 1.67 16 29 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.09 2.30 7.02 -2.38 -0.02 2.28 16 31 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 32 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 33 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 34 H 0.13 2.49 7.47 -2.91 -0.02 2.46 16 35 H 0.09 4.16 7.22 -2.39 -0.02 4.14 16 36 H 0.04 1.79 6.83 -2.39 -0.02 1.77 16 37 H 0.04 2.02 7.16 -2.39 -0.02 2.00 16 38 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 39 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 40 H 0.06 2.28 6.84 -2.39 -0.02 2.27 16 Total: -1.00 -74.31 327.61 3.50 -70.81 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: 1.05 Total: 13.78 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: 5.44 Total: 6.63 kcal Atomic # 7 Polarization: -110.61 SS G_CDS: -4.97 Total: -115.58 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -0.05 Total: -23.67 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -74.31 3.50 -70.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043705120.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.812 kcal (2) G-P(sol) polarization free energy of solvation -74.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds