Wall clock time and date at job start Tue Mar 31 2020 02:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86808 * 120.00120 * 2 1 4 4 H 1.48502 * 109.46896 * 274.98829 * 3 2 1 5 5 H 1.48501 * 109.46951 * 34.98189 * 3 2 1 6 6 H 1.48492 * 109.47136 * 154.98368 * 3 2 1 7 7 C 1.38813 * 120.00341 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00469 * 187.02689 * 7 2 1 9 9 N 1.36935 * 119.99748 * 7.02995 * 7 2 1 10 10 C 1.47424 * 125.65133 * 174.82743 * 9 7 2 11 11 C 1.54912 * 104.93008 * 204.15523 * 10 9 7 12 12 H 1.09001 * 111.00319 * 81.04529 * 11 10 9 13 13 N 1.46495 * 111.00412 * 204.85953 * 11 10 9 14 14 C 1.34781 * 120.00089 * 273.54867 * 13 11 10 15 15 O 1.21282 * 119.99792 * 359.97438 * 14 13 11 16 16 C 1.50699 * 120.00408 * 180.02562 * 14 13 11 17 17 H 1.09001 * 109.52846 * 55.12149 * 16 14 13 18 18 C 1.53145 * 109.51921 * 294.99623 * 16 14 13 19 19 O 1.43074 * 109.15088 * 184.78167 * 18 16 14 20 20 C 1.43081 * 113.59092 * 57.95166 * 19 18 16 21 21 C 1.53142 * 109.15097 * 302.05076 * 20 19 18 22 22 O 1.43064 * 109.52921 * 175.32416 * 16 14 13 23 23 C 1.55159 * 101.58072 * 322.93479 * 11 10 9 24 24 H 1.08994 * 110.71708 * 154.04400 * 23 11 10 25 25 O 1.42901 * 110.71715 * 277.13784 * 23 11 10 26 26 C 1.47292 * 125.79485 * 354.82496 * 9 7 2 27 27 H 0.96997 * 119.99818 * 0.02562 * 1 2 3 28 28 H 1.08992 * 110.36982 * 85.26213 * 10 9 7 29 29 H 1.09001 * 110.36388 * 323.04655 * 10 9 7 30 30 H 0.97002 * 120.00222 * 93.54294 * 13 11 10 31 31 H 1.08999 * 109.52533 * 304.68373 * 18 16 14 32 32 H 1.09004 * 109.52498 * 64.82224 * 18 16 14 33 33 H 1.08996 * 109.52382 * 61.94847 * 20 19 18 34 34 H 1.08995 * 109.52495 * 182.14458 * 20 19 18 35 35 H 1.09000 * 109.52353 * 175.21756 * 21 20 19 36 36 H 1.09005 * 109.52348 * 295.40506 * 21 20 19 37 37 H 0.96698 * 113.99752 * 179.97438 * 25 23 11 38 38 H 1.09004 * 109.85433 * 59.50077 * 26 9 7 39 39 H 1.09001 * 110.00331 * 298.43784 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.3923 2.1073 -1.3948 5 1 1.5043 2.6200 0.8027 6 1 3.5965 1.4121 0.5920 7 6 2.0103 -1.2021 0.0005 8 1 3.0842 -1.2056 0.1150 9 7 1.3334 -2.3836 -0.1441 10 6 1.9494 -3.7172 -0.2687 11 6 0.8930 -4.5775 -1.0060 12 1 0.9282 -4.4028 -2.0813 13 7 1.0689 -5.9997 -0.7019 14 6 1.9264 -6.7432 -1.4288 15 8 2.5520 -6.2349 -2.3350 16 6 2.1071 -8.2064 -1.1164 17 1 1.1389 -8.7065 -1.1415 18 6 2.7264 -8.3597 0.2758 19 8 2.9974 -9.7432 0.5192 20 6 3.8681 -10.3352 -0.4497 21 6 3.2488 -10.1818 -1.8419 22 8 2.9777 -8.7983 -2.0851 23 6 -0.4282 -4.0378 -0.3971 24 1 -1.2585 -4.1822 -1.0882 25 8 -0.7010 -4.6670 0.8567 26 6 -0.1305 -2.5364 -0.2012 27 1 -0.4850 0.8400 -0.0004 28 1 2.1563 -4.1332 0.7172 29 1 2.8665 -3.6581 -0.8549 30 1 0.5684 -6.4063 0.0227 31 1 3.6556 -7.7922 0.3257 32 1 2.0306 -7.9862 1.0272 33 1 4.8357 -9.8342 -0.4243 34 1 3.9987 -11.3935 -0.2236 35 1 3.9450 -10.5544 -2.5933 36 1 2.3195 -10.7494 -1.8918 37 1 -1.5163 -4.3642 1.2794 38 1 -0.5297 -1.9667 -1.0404 39 1 -0.5783 -2.1879 0.7295 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083347631.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:31:19 Heat of formation + Delta-G solvation = -134.203514 kcal Electronic energy + Delta-G solvation = -23552.137401 eV Core-core repulsion = 19882.361544 eV Total energy + Delta-G solvation = -3669.775857 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 286.141 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.58615 -39.20683 -37.80559 -36.21418 -34.86746 -34.04268 -32.24234 -31.40459 -28.89560 -28.12978 -26.92541 -25.24547 -24.36112 -22.18404 -20.83740 -20.42425 -19.90144 -17.88296 -17.23875 -17.18109 -16.78478 -16.49523 -16.15099 -15.62733 -15.16113 -14.92361 -14.65835 -14.26967 -13.97337 -13.63976 -13.41184 -13.15694 -12.71877 -12.64744 -12.51555 -12.25325 -11.85881 -11.33144 -11.10314 -10.96510 -10.87724 -10.84738 -10.54395 -10.46509 -10.13129 -9.84456 -9.70450 -9.43790 -9.33466 -8.77089 -8.64597 -6.89016 -5.77766 -3.09334 2.63777 2.76226 3.38868 3.39986 3.45624 3.47082 3.79901 4.24975 4.43098 4.51014 4.62362 4.70468 4.72055 4.81527 4.95357 5.15998 5.24123 5.30289 5.35084 5.43283 5.49194 5.49742 5.68177 5.84138 6.02425 6.17978 6.52608 6.61213 6.63020 6.67643 6.90434 7.29459 7.41610 7.67842 7.73895 8.02415 8.17453 8.35880 9.15704 9.76255 10.41147 11.35182 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.029963 B = 0.003715 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.247025 B = 7535.225540 C = 7881.182386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.008 4.008 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.226 4.226 8 H 0.080 0.920 9 N -0.600 5.600 10 C 0.131 3.869 11 C 0.140 3.860 12 H 0.104 0.896 13 N -0.704 5.704 14 C 0.517 3.483 15 O -0.516 6.516 16 C 0.040 3.960 17 H 0.093 0.907 18 C 0.037 3.963 19 O -0.374 6.374 20 C 0.020 3.980 21 C 0.023 3.977 22 O -0.350 6.350 23 C 0.069 3.931 24 H 0.062 0.938 25 O -0.568 6.568 26 C 0.153 3.847 27 H 0.253 0.747 28 H 0.026 0.974 29 H 0.046 0.954 30 H 0.407 0.593 31 H 0.070 0.930 32 H 0.114 0.886 33 H 0.064 0.936 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.062 0.938 37 H 0.380 0.620 38 H 0.058 0.942 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.142 -20.043 0.149 20.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.354 4.354 8 H 0.098 0.902 9 N -0.327 5.327 10 C 0.004 3.996 11 C 0.035 3.965 12 H 0.121 0.879 13 N -0.358 5.358 14 C 0.300 3.700 15 O -0.390 6.390 16 C -0.022 4.022 17 H 0.111 0.889 18 C -0.041 4.041 19 O -0.293 6.293 20 C -0.057 4.057 21 C -0.054 4.054 22 O -0.268 6.268 23 C 0.009 3.991 24 H 0.080 0.920 25 O -0.375 6.375 26 C 0.027 3.973 27 H 0.063 0.937 28 H 0.043 0.957 29 H 0.064 0.936 30 H 0.242 0.758 31 H 0.089 0.911 32 H 0.132 0.868 33 H 0.082 0.918 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.081 0.919 37 H 0.228 0.772 38 H 0.076 0.924 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.119 -19.736 -0.642 19.778 hybrid contribution -0.372 0.978 0.441 1.135 sum 0.747 -18.758 -0.201 18.774 Atomic orbital electron populations 1.69919 1.04956 1.25173 1.57184 1.24806 0.95752 0.97704 1.02086 0.86074 0.78706 0.83323 0.77556 1.21530 1.21767 1.20573 1.19098 0.91247 0.82286 1.42736 0.90212 1.44331 1.01185 1.00937 1.86272 1.21835 0.94754 0.86344 0.96692 1.22382 0.95504 0.78403 1.00197 0.87851 1.45689 1.43774 1.10375 1.35949 1.19870 0.80270 0.86973 0.82841 1.90751 1.45470 1.72767 1.30053 1.22575 0.95539 0.93528 0.90573 0.88945 1.23177 1.01941 0.83536 0.95414 1.88114 1.67807 1.23654 1.49689 1.23315 0.93622 0.99924 0.88833 1.23336 1.01188 0.83136 0.97726 1.88245 1.66962 1.23429 1.48147 1.23497 0.95239 0.95639 0.84694 0.91983 1.86237 1.47710 1.67403 1.36105 1.21913 0.85702 0.87881 1.01766 0.93706 0.95675 0.93611 0.75756 0.91124 0.86773 0.91752 0.87532 0.87259 0.91931 0.77168 0.92446 0.92993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.61 10.38 55.49 0.58 -26.04 16 2 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 3 Si 0.91 22.17 29.56 -169.99 -5.02 17.14 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 7 C -0.23 -6.35 10.27 -15.06 -0.15 -6.51 16 8 H 0.08 2.20 7.84 -52.49 -0.41 1.79 16 9 N -0.60 -15.39 3.40 -169.86 -0.58 -15.97 16 10 C 0.13 2.87 6.91 -2.53 -0.02 2.85 16 11 C 0.14 2.57 3.20 -65.78 -0.21 2.36 16 12 H 0.10 2.03 7.73 -51.93 -0.40 1.63 16 13 N -0.70 -10.47 5.14 -51.73 -0.27 -10.74 16 14 C 0.52 8.17 7.18 -10.98 -0.08 8.09 16 15 O -0.52 -10.51 16.25 -14.26 -0.23 -10.75 16 16 C 0.04 0.49 3.25 -27.81 -0.09 0.40 16 17 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 18 C 0.04 0.40 6.29 37.23 0.23 0.64 16 19 O -0.37 -4.02 10.85 -48.80 -0.53 -4.55 16 20 C 0.02 0.17 7.05 37.23 0.26 0.43 16 21 C 0.02 0.21 7.05 37.23 0.26 0.47 16 22 O -0.35 -4.73 10.03 -62.51 -0.63 -5.35 16 23 C 0.07 1.20 4.20 -24.90 -0.10 1.10 16 24 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 25 O -0.57 -8.57 12.13 -35.23 -0.43 -8.99 16 26 C 0.15 3.52 5.16 -2.92 -0.02 3.51 16 27 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.41 5.10 7.47 -40.82 -0.30 4.80 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.11 1.06 8.05 -51.93 -0.42 0.64 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.38 4.38 9.12 45.56 0.42 4.80 16 38 H 0.06 1.46 7.31 -51.93 -0.38 1.08 16 39 H 0.05 1.30 7.55 -51.93 -0.39 0.91 16 LS Contribution 321.76 15.07 4.85 4.85 Total: -1.00 -34.55 321.76 -7.10 -41.65 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -4.83 Total: 5.73 kcal Atomic # 6 Polarization: 13.03 SS G_CDS: -0.01 Total: 13.02 kcal Atomic # 7 Polarization: -52.48 SS G_CDS: -0.27 Total: -52.75 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -1.82 Total: -29.64 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.55 -7.10 -41.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083347631.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.553 kcal (2) G-P(sol) polarization free energy of solvation -34.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds