Wall clock time and date at job start Tue Mar 31 2020 02:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86808 * 120.00120 * 2 1 4 4 H 1.48502 * 109.46896 * 274.98829 * 3 2 1 5 5 H 1.48501 * 109.46951 * 34.98189 * 3 2 1 6 6 H 1.48492 * 109.47136 * 154.98368 * 3 2 1 7 7 C 1.38813 * 120.00341 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00469 * 187.02689 * 7 2 1 9 9 N 1.36935 * 119.99748 * 7.02995 * 7 2 1 10 10 C 1.47424 * 125.65133 * 174.82743 * 9 7 2 11 11 C 1.54912 * 104.93008 * 204.15523 * 10 9 7 12 12 H 1.09001 * 111.00319 * 81.04529 * 11 10 9 13 13 N 1.46495 * 111.00412 * 204.85953 * 11 10 9 14 14 C 1.34781 * 120.00089 * 273.54867 * 13 11 10 15 15 O 1.21282 * 119.99792 * 359.97438 * 14 13 11 16 16 C 1.50699 * 120.00408 * 180.02562 * 14 13 11 17 17 H 1.09001 * 109.52846 * 55.12149 * 16 14 13 18 18 C 1.53145 * 109.51921 * 294.99623 * 16 14 13 19 19 O 1.43074 * 109.15088 * 184.78167 * 18 16 14 20 20 C 1.43081 * 113.59092 * 57.95166 * 19 18 16 21 21 C 1.53142 * 109.15097 * 302.05076 * 20 19 18 22 22 O 1.43064 * 109.52921 * 175.32416 * 16 14 13 23 23 C 1.55159 * 101.58072 * 322.93479 * 11 10 9 24 24 H 1.08994 * 110.71708 * 154.04400 * 23 11 10 25 25 O 1.42901 * 110.71715 * 277.13784 * 23 11 10 26 26 C 1.47292 * 125.79485 * 354.82496 * 9 7 2 27 27 H 0.96997 * 119.99818 * 0.02562 * 1 2 3 28 28 H 1.08992 * 110.36982 * 85.26213 * 10 9 7 29 29 H 1.09001 * 110.36388 * 323.04655 * 10 9 7 30 30 H 0.97002 * 120.00222 * 93.54294 * 13 11 10 31 31 H 1.08999 * 109.52533 * 304.68373 * 18 16 14 32 32 H 1.09004 * 109.52498 * 64.82224 * 18 16 14 33 33 H 1.08996 * 109.52382 * 61.94847 * 20 19 18 34 34 H 1.08995 * 109.52495 * 182.14458 * 20 19 18 35 35 H 1.09000 * 109.52353 * 175.21756 * 21 20 19 36 36 H 1.09005 * 109.52348 * 295.40506 * 21 20 19 37 37 H 0.96698 * 113.99752 * 179.97438 * 25 23 11 38 38 H 1.09004 * 109.85433 * 59.50077 * 26 9 7 39 39 H 1.09001 * 110.00331 * 298.43784 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.3923 2.1073 -1.3948 5 1 1.5043 2.6200 0.8027 6 1 3.5965 1.4121 0.5920 7 6 2.0103 -1.2021 0.0005 8 1 3.0842 -1.2056 0.1150 9 7 1.3334 -2.3836 -0.1441 10 6 1.9494 -3.7172 -0.2687 11 6 0.8930 -4.5775 -1.0060 12 1 0.9282 -4.4028 -2.0813 13 7 1.0689 -5.9997 -0.7019 14 6 1.9264 -6.7432 -1.4288 15 8 2.5520 -6.2349 -2.3350 16 6 2.1071 -8.2064 -1.1164 17 1 1.1389 -8.7065 -1.1415 18 6 2.7264 -8.3597 0.2758 19 8 2.9974 -9.7432 0.5192 20 6 3.8681 -10.3352 -0.4497 21 6 3.2488 -10.1818 -1.8419 22 8 2.9777 -8.7983 -2.0851 23 6 -0.4282 -4.0378 -0.3971 24 1 -1.2585 -4.1822 -1.0882 25 8 -0.7010 -4.6670 0.8567 26 6 -0.1305 -2.5364 -0.2012 27 1 -0.4850 0.8400 -0.0004 28 1 2.1563 -4.1332 0.7172 29 1 2.8665 -3.6581 -0.8549 30 1 0.5684 -6.4063 0.0227 31 1 3.6556 -7.7922 0.3257 32 1 2.0306 -7.9862 1.0272 33 1 4.8357 -9.8342 -0.4243 34 1 3.9987 -11.3935 -0.2236 35 1 3.9450 -10.5544 -2.5933 36 1 2.3195 -10.7494 -1.8918 37 1 -1.5163 -4.3642 1.2794 38 1 -0.5297 -1.9667 -1.0404 39 1 -0.5783 -2.1879 0.7295 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083347631.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:31:18 Heat of formation + Delta-G solvation = -163.179922 kcal Electronic energy + Delta-G solvation = -23553.393912 eV Core-core repulsion = 19882.361544 eV Total energy + Delta-G solvation = -3671.032368 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 286.141 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.63581 -40.42831 -39.24384 -37.08181 -36.45033 -35.51521 -33.79417 -32.67858 -30.38142 -29.38674 -28.46832 -26.54216 -25.85437 -23.14164 -22.39998 -21.84814 -21.35965 -19.35183 -18.60050 -18.44864 -17.91712 -17.49667 -17.02228 -16.85313 -16.54473 -16.35788 -15.93533 -15.80462 -15.39754 -14.79347 -14.74383 -14.51053 -14.39083 -14.06329 -13.95618 -13.28067 -13.19949 -12.83233 -12.77952 -12.64519 -12.29477 -12.10255 -12.00204 -11.89100 -11.87080 -11.62762 -10.93796 -10.83096 -10.75697 -10.29666 -10.16637 -8.95403 -7.91187 -5.25340 1.39975 1.45048 1.47123 1.55400 1.65360 2.46621 2.63154 2.85195 3.15612 3.28993 3.42006 3.53470 3.70342 3.82722 3.84775 3.93119 3.97529 4.13961 4.23963 4.26962 4.47347 4.48918 4.55026 4.65864 4.79126 4.80960 4.82573 4.99099 5.33653 5.40194 5.46973 5.64279 5.85728 5.87655 6.13524 6.49736 6.88035 7.05473 7.15034 7.69425 8.33721 9.19411 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.029963 B = 0.003715 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.247025 B = 7535.225540 C = 7881.182386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.057 4.057 3 Si 0.977 3.023 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.272 1.272 7 C -0.249 4.249 8 H 0.075 0.925 9 N -0.622 5.622 10 C 0.132 3.868 11 C 0.152 3.848 12 H 0.090 0.910 13 N -0.687 5.687 14 C 0.517 3.483 15 O -0.567 6.567 16 C 0.048 3.952 17 H 0.122 0.878 18 C 0.041 3.959 19 O -0.381 6.381 20 C 0.016 3.984 21 C 0.019 3.981 22 O -0.385 6.385 23 C 0.096 3.904 24 H 0.095 0.905 25 O -0.563 6.563 26 C 0.157 3.843 27 H 0.250 0.750 28 H 0.027 0.973 29 H 0.025 0.975 30 H 0.422 0.578 31 H 0.054 0.946 32 H 0.133 0.867 33 H 0.058 0.942 34 H 0.138 0.862 35 H 0.127 0.873 36 H 0.079 0.921 37 H 0.400 0.600 38 H 0.027 0.973 39 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.355 -22.068 0.720 22.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.250 4.250 3 Si 0.805 3.195 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.197 1.197 7 C -0.378 4.378 8 H 0.093 0.907 9 N -0.349 5.349 10 C 0.005 3.995 11 C 0.045 3.955 12 H 0.108 0.892 13 N -0.342 5.342 14 C 0.303 3.697 15 O -0.445 6.445 16 C -0.013 4.013 17 H 0.140 0.860 18 C -0.036 4.036 19 O -0.299 6.299 20 C -0.061 4.061 21 C -0.057 4.057 22 O -0.304 6.304 23 C 0.036 3.964 24 H 0.113 0.887 25 O -0.372 6.372 26 C 0.032 3.968 27 H 0.059 0.941 28 H 0.045 0.955 29 H 0.044 0.956 30 H 0.261 0.739 31 H 0.073 0.927 32 H 0.150 0.850 33 H 0.077 0.923 34 H 0.155 0.845 35 H 0.145 0.855 36 H 0.097 0.903 37 H 0.251 0.749 38 H 0.045 0.955 39 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 0.598 -21.816 -0.029 21.824 hybrid contribution -0.173 1.542 0.283 1.577 sum 0.426 -20.275 0.254 20.281 Atomic orbital electron populations 1.70104 1.06016 1.25569 1.57613 1.25590 0.96715 1.00684 1.02044 0.85085 0.77826 0.79211 0.77357 1.21390 1.21551 1.19654 1.19398 0.91521 0.83859 1.43039 0.90678 1.44606 1.02571 1.01546 1.86167 1.21872 0.95079 0.85755 0.96800 1.21963 0.94650 0.79875 0.98965 0.89214 1.45468 1.43720 1.08751 1.36212 1.20573 0.78989 0.88491 0.81690 1.90730 1.47371 1.74089 1.32345 1.22550 0.97040 0.90780 0.90960 0.86015 1.23145 1.01590 0.83912 0.95001 1.88110 1.68224 1.23174 1.50433 1.23532 0.92877 1.01441 0.88228 1.23621 1.02538 0.81047 0.98539 1.88197 1.67378 1.25922 1.48949 1.23093 0.95642 0.91381 0.86313 0.88686 1.86197 1.49283 1.66531 1.35187 1.21797 0.84108 0.91736 0.99202 0.94055 0.95475 0.95642 0.73902 0.92748 0.84955 0.92335 0.84460 0.85489 0.90288 0.74890 0.95523 0.95481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.47 10.38 21.65 0.22 -55.24 16 2 C -0.06 -3.24 5.48 84.86 0.46 -2.77 16 3 Si 0.98 46.13 29.56 68.60 2.03 48.16 16 4 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 5 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 6 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.25 -14.40 10.27 84.03 0.86 -13.54 16 8 H 0.08 4.26 7.84 -2.91 -0.02 4.24 16 9 N -0.62 -32.66 3.40 -691.31 -2.35 -35.02 16 10 C 0.13 5.86 6.91 86.86 0.60 6.46 16 11 C 0.15 5.47 3.20 46.39 0.15 5.62 16 12 H 0.09 3.54 7.73 -2.39 -0.02 3.52 16 13 N -0.69 -19.31 5.14 -435.96 -2.24 -21.55 16 14 C 0.52 15.86 7.18 87.66 0.63 16.49 16 15 O -0.57 -23.42 16.25 15.92 0.26 -23.16 16 16 C 0.05 1.09 3.25 29.90 0.10 1.18 16 17 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 18 C 0.04 0.82 6.29 72.03 0.45 1.27 16 19 O -0.38 -7.19 10.85 -136.00 -1.48 -8.66 16 20 C 0.02 0.22 7.05 72.03 0.51 0.73 16 21 C 0.02 0.28 7.05 72.03 0.51 0.79 16 22 O -0.39 -9.88 10.03 -122.90 -1.23 -11.11 16 23 C 0.10 3.19 4.20 31.78 0.13 3.32 16 24 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 25 O -0.56 -15.40 12.13 -148.98 -1.81 -17.21 16 26 C 0.16 7.34 5.16 86.68 0.45 7.79 16 27 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 28 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.42 9.33 7.47 -92.71 -0.69 8.64 16 31 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.13 2.08 8.05 -2.39 -0.02 2.06 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.14 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 37 H 0.40 7.98 9.12 -74.06 -0.68 7.31 16 38 H 0.03 1.39 7.31 -2.38 -0.02 1.38 16 39 H 0.03 1.38 7.55 -2.39 -0.02 1.37 16 Total: -1.00 -77.04 321.76 -2.04 -79.08 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -0.29 Total: 17.38 kcal Atomic # 6 Polarization: 22.49 SS G_CDS: 4.85 Total: 27.34 kcal Atomic # 7 Polarization: -107.44 SS G_CDS: -4.37 Total: -111.81 kcal Atomic # 8 Polarization: -55.89 SS G_CDS: -4.26 Total: -60.15 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -77.04 -2.04 -79.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083347631.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.101 kcal (2) G-P(sol) polarization free energy of solvation -77.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds