Wall clock time and date at job start Tue Mar 31 2020 02:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00437 * 2 1 4 4 H 1.48502 * 109.47207 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47424 * 300.00565 * 3 2 1 6 6 H 1.48504 * 109.46728 * 60.00503 * 3 2 1 7 7 C 1.38815 * 119.99875 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00174 * 194.48705 * 7 2 1 9 9 N 1.36939 * 120.00127 * 14.48215 * 7 2 1 10 10 C 1.46538 * 119.74293 * 205.17514 * 9 7 2 11 11 C 1.53146 * 108.24855 * 236.44325 * 10 9 7 12 12 C 1.53064 * 109.21156 * 301.58049 * 11 10 9 13 13 H 1.08999 * 114.44379 * 275.05101 * 12 11 10 14 14 C 1.54078 * 111.39091 * 142.40980 * 12 11 10 15 15 N 1.47286 * 87.60836 * 273.97326 * 14 12 11 16 16 C 1.34772 * 136.54691 * 151.39036 * 15 14 12 17 17 O 1.21276 * 120.00351 * 179.97438 * 16 15 14 18 18 C 1.50703 * 119.99961 * 359.97438 * 16 15 14 19 19 H 1.09002 * 115.54900 * 325.66805 * 18 16 15 20 20 C 1.52996 * 117.49996 * 180.02562 * 18 16 15 21 21 C 1.53002 * 117.49763 * 111.37629 * 18 16 15 22 22 F 1.39897 * 117.49549 * 214.97778 * 21 18 16 23 23 F 1.39894 * 117.50170 * 0.02562 * 21 18 16 24 24 C 1.46471 * 86.90950 * 331.38743 * 15 14 12 25 25 H 1.09001 * 111.44046 * 276.36207 * 24 15 14 26 26 C 1.45708 * 119.73627 * 25.19914 * 9 7 2 27 27 H 0.96999 * 119.99628 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.70422 * 116.75165 * 10 9 7 29 29 H 1.09004 * 109.70552 * 356.13292 * 10 9 7 30 30 H 1.09006 * 109.50960 * 181.65676 * 11 10 9 31 31 H 1.08993 * 109.55600 * 61.53168 * 11 10 9 32 32 H 1.08998 * 113.52981 * 159.28834 * 14 12 11 33 33 H 1.09004 * 113.59753 * 28.66276 * 14 12 11 34 34 H 1.08995 * 117.50016 * 359.97438 * 20 18 16 35 35 H 1.08998 * 117.50032 * 145.00047 * 20 18 16 36 36 H 1.09000 * 108.78426 * 19.09168 * 26 9 7 37 37 H 1.09003 * 108.78659 * 260.88707 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0645 -1.2172 0.2334 9 7 1.3582 -2.3691 -0.2976 10 6 1.8761 -3.6415 0.2124 11 6 2.1193 -4.5724 -0.9791 12 6 0.8071 -4.7664 -1.7428 13 1 0.1654 -5.5523 -1.3445 14 6 1.0457 -4.8276 -3.2637 15 7 0.9702 -3.3567 -3.2725 16 6 1.4825 -2.3552 -4.0146 17 8 1.2130 -1.2033 -3.7475 18 6 2.3903 -2.6665 -5.1766 19 1 3.0393 -3.5327 -5.0471 20 6 2.9400 -1.4861 -5.9797 21 6 1.8588 -2.3854 -6.5835 22 9 2.2428 -3.2599 -7.6057 23 9 0.5675 -1.8585 -6.6928 24 6 0.0867 -3.4742 -2.1101 25 1 -0.9439 -3.6628 -2.4106 26 6 0.1550 -2.3359 -1.1189 27 1 -0.4849 0.8401 0.0004 28 1 1.1476 -4.0908 0.8873 29 1 2.8130 -3.4708 0.7428 30 1 2.4779 -5.5372 -0.6201 31 1 2.8641 -4.1307 -1.6411 32 1 0.2357 -5.3082 -3.8123 33 1 2.0277 -5.2145 -3.5361 34 1 2.6448 -0.4842 -5.6680 35 1 3.9503 -1.5758 -6.3789 36 1 0.1286 -1.3928 -1.6647 37 1 -0.7168 -2.3857 -0.4664 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084329103.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:27:19 Heat of formation + Delta-G solvation = -25.840102 kcal Electronic energy + Delta-G solvation = -24003.943896 eV Core-core repulsion = 20227.779513 eV Total energy + Delta-G solvation = -3776.164382 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.123 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.75497 -47.42070 -40.59224 -38.25466 -35.31102 -35.20956 -32.16659 -30.16553 -29.26452 -26.98819 -24.53309 -23.83913 -22.61661 -22.40222 -21.07068 -19.74135 -18.38474 -17.63260 -17.20628 -16.50729 -16.04143 -15.77674 -15.66249 -15.17717 -14.22420 -14.08296 -13.78288 -13.73168 -13.54570 -13.43411 -13.31081 -13.25583 -12.77601 -12.46453 -12.22563 -11.92609 -11.49814 -11.26403 -11.08116 -10.68317 -10.67548 -10.48597 -10.20539 -10.17972 -9.88063 -9.78788 -9.63626 -9.05964 -8.31657 -8.18882 -6.59899 -5.65709 -3.07791 2.39625 2.90602 3.09505 3.47343 3.54261 3.56142 3.59446 4.17249 4.24961 4.50453 4.58965 4.64349 4.80715 5.17887 5.28668 5.41939 5.44913 5.49038 5.51581 5.60120 5.69712 5.76974 5.87121 6.05120 6.11647 6.27887 6.36528 6.48743 6.57021 6.76862 6.97945 7.47516 7.76792 7.93741 8.22878 8.57083 8.61599 9.35409 9.99708 10.47051 11.42568 Molecular weight = 286.12amu Principal moments of inertia in cm(-1) A = 0.015764 B = 0.007009 C = 0.005488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.787307 B = 3994.057848 C = 5101.109320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.011 3.989 3 Si 0.901 3.099 4 H -0.280 1.280 5 H -0.288 1.288 6 H -0.292 1.292 7 C -0.253 4.253 8 H 0.063 0.937 9 N -0.585 5.585 10 C 0.148 3.852 11 C -0.115 4.115 12 C -0.112 4.112 13 H 0.094 0.906 14 C 0.094 3.906 15 N -0.627 5.627 16 C 0.568 3.432 17 O -0.500 6.500 18 C -0.180 4.180 19 H 0.142 0.858 20 C -0.141 4.141 21 C 0.215 3.785 22 F -0.160 7.160 23 F -0.151 7.151 24 C 0.120 3.880 25 H 0.074 0.926 26 C 0.166 3.834 27 H 0.252 0.748 28 H 0.020 0.980 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.137 0.863 35 H 0.129 0.871 36 H 0.104 0.896 37 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.998 -11.322 -10.345 15.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.188 4.188 3 Si 0.732 3.268 4 H -0.205 1.205 5 H -0.215 1.215 6 H -0.219 1.219 7 C -0.382 4.382 8 H 0.081 0.919 9 N -0.307 5.307 10 C 0.021 3.979 11 C -0.154 4.154 12 C -0.132 4.132 13 H 0.112 0.888 14 C -0.029 4.029 15 N -0.362 5.362 16 C 0.354 3.646 17 O -0.374 6.374 18 C -0.203 4.203 19 H 0.160 0.840 20 C -0.179 4.179 21 C 0.177 3.823 22 F -0.140 7.140 23 F -0.131 7.131 24 C 0.016 3.984 25 H 0.092 0.908 26 C 0.039 3.961 27 H 0.062 0.938 28 H 0.038 0.962 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.155 0.845 35 H 0.148 0.852 36 H 0.122 0.878 37 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 3.791 -10.345 -10.363 15.126 hybrid contribution 0.243 0.573 -0.402 0.741 sum 4.034 -9.772 -10.765 15.089 Atomic orbital electron populations 1.70011 1.05225 1.25192 1.54371 1.24929 0.95263 0.98150 1.00442 0.86245 0.79165 0.84338 0.77088 1.20506 1.21491 1.21941 1.19127 0.91695 0.84575 1.42827 0.91938 1.43472 1.29791 1.01618 1.55866 1.20730 0.97437 0.87257 0.92482 1.21835 0.94754 0.99398 0.99437 1.22758 0.98868 0.97743 0.93794 0.88836 1.23367 1.01378 0.81216 0.96981 1.49315 1.49223 1.05974 1.31737 1.18361 0.80594 0.84237 0.81362 1.90819 1.59175 1.19024 1.68378 1.23684 1.02314 1.03470 0.90784 0.84047 1.24307 0.98226 0.98244 0.97131 1.19762 0.81647 0.94968 0.85875 1.93029 1.90367 1.69770 1.60852 1.93077 1.37757 1.85898 1.96406 1.22707 0.92674 0.97086 0.85903 0.90791 1.20220 0.88946 0.96257 0.90634 0.93833 0.96233 0.92570 0.92594 0.92139 0.90337 0.91025 0.84513 0.85242 0.87807 0.95134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.38 10.94 55.49 0.61 -26.78 16 2 C 0.01 0.31 4.94 -17.43 -0.09 0.23 16 3 Si 0.90 23.21 29.58 -169.99 -5.03 18.18 16 4 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 6 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 7 C -0.25 -7.17 9.53 -15.06 -0.14 -7.31 16 8 H 0.06 1.75 7.83 -52.49 -0.41 1.34 16 9 N -0.58 -14.76 3.03 -174.88 -0.53 -15.29 16 10 C 0.15 2.99 6.46 -3.95 -0.03 2.96 16 11 C -0.11 -1.83 5.70 -26.62 -0.15 -1.99 16 12 C -0.11 -1.65 4.57 -90.31 -0.41 -2.07 16 13 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 14 C 0.09 1.21 7.77 -11.55 -0.09 1.12 16 15 N -0.63 -11.21 3.33 -187.72 -0.63 -11.84 16 16 C 0.57 11.02 7.43 -10.99 -0.08 10.94 16 17 O -0.50 -12.23 15.50 5.56 0.09 -12.14 16 18 C -0.18 -2.56 6.03 -91.77 -0.55 -3.12 16 19 H 0.14 1.60 8.14 -51.93 -0.42 1.17 16 20 C -0.14 -1.76 10.02 -26.71 -0.27 -2.03 16 21 C 0.21 2.97 5.20 -26.70 -0.14 2.83 16 22 F -0.16 -2.04 17.60 2.25 0.04 -2.00 16 23 F -0.15 -2.50 17.13 2.25 0.04 -2.46 16 24 C 0.12 2.26 4.03 -77.69 -0.31 1.95 16 25 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 26 C 0.17 4.08 4.59 -5.42 -0.02 4.06 16 27 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 1.13 7.87 -51.93 -0.41 0.72 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 1.05 7.68 -51.93 -0.40 0.65 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.79 8.05 -51.93 -0.42 0.37 16 34 H 0.14 1.93 7.67 -51.93 -0.40 1.53 16 35 H 0.13 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.10 3.03 4.95 -51.93 -0.26 2.77 16 37 H 0.03 0.81 8.00 -51.93 -0.42 0.40 16 LS Contribution 312.05 15.07 4.70 4.70 Total: -1.00 -34.04 312.05 -7.80 -41.84 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -4.80 Total: -1.79 kcal Atomic # 6 Polarization: 9.88 SS G_CDS: -2.29 Total: 7.59 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: -0.55 Total: -53.91 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.09 Total: -12.14 kcal Atomic # 9 Polarization: -4.54 SS G_CDS: 0.08 Total: -4.47 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -5.03 Total: 18.18 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -34.04 -7.80 -41.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084329103.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.999 kcal (2) G-P(sol) polarization free energy of solvation -34.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds