Wall clock time and date at job start Tue Mar 31 2020 02:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00437 * 2 1 4 4 H 1.48502 * 109.47207 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47424 * 300.00565 * 3 2 1 6 6 H 1.48504 * 109.46728 * 60.00503 * 3 2 1 7 7 C 1.38815 * 119.99875 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00174 * 194.48705 * 7 2 1 9 9 N 1.36939 * 120.00127 * 14.48215 * 7 2 1 10 10 C 1.46538 * 119.74293 * 205.17514 * 9 7 2 11 11 C 1.53146 * 108.24855 * 236.44325 * 10 9 7 12 12 C 1.53064 * 109.21156 * 301.58049 * 11 10 9 13 13 H 1.08999 * 114.44379 * 275.05101 * 12 11 10 14 14 C 1.54078 * 111.39091 * 142.40980 * 12 11 10 15 15 N 1.47286 * 87.60836 * 273.97326 * 14 12 11 16 16 C 1.34772 * 136.54691 * 151.39036 * 15 14 12 17 17 O 1.21276 * 120.00351 * 179.97438 * 16 15 14 18 18 C 1.50703 * 119.99961 * 359.97438 * 16 15 14 19 19 H 1.09002 * 115.54900 * 325.66805 * 18 16 15 20 20 C 1.52996 * 117.49996 * 180.02562 * 18 16 15 21 21 C 1.53002 * 117.49763 * 111.37629 * 18 16 15 22 22 F 1.39897 * 117.49549 * 214.97778 * 21 18 16 23 23 F 1.39894 * 117.50170 * 0.02562 * 21 18 16 24 24 C 1.46471 * 86.90950 * 331.38743 * 15 14 12 25 25 H 1.09001 * 111.44046 * 276.36207 * 24 15 14 26 26 C 1.45708 * 119.73627 * 25.19914 * 9 7 2 27 27 H 0.96999 * 119.99628 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.70422 * 116.75165 * 10 9 7 29 29 H 1.09004 * 109.70552 * 356.13292 * 10 9 7 30 30 H 1.09006 * 109.50960 * 181.65676 * 11 10 9 31 31 H 1.08993 * 109.55600 * 61.53168 * 11 10 9 32 32 H 1.08998 * 113.52981 * 159.28834 * 14 12 11 33 33 H 1.09004 * 113.59753 * 28.66276 * 14 12 11 34 34 H 1.08995 * 117.50016 * 359.97438 * 20 18 16 35 35 H 1.08998 * 117.50032 * 145.00047 * 20 18 16 36 36 H 1.09000 * 108.78426 * 19.09168 * 26 9 7 37 37 H 1.09003 * 108.78659 * 260.88707 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0645 -1.2172 0.2334 9 7 1.3582 -2.3691 -0.2976 10 6 1.8761 -3.6415 0.2124 11 6 2.1193 -4.5724 -0.9791 12 6 0.8071 -4.7664 -1.7428 13 1 0.1654 -5.5523 -1.3445 14 6 1.0457 -4.8276 -3.2637 15 7 0.9702 -3.3567 -3.2725 16 6 1.4825 -2.3552 -4.0146 17 8 1.2130 -1.2033 -3.7475 18 6 2.3903 -2.6665 -5.1766 19 1 3.0393 -3.5327 -5.0471 20 6 2.9400 -1.4861 -5.9797 21 6 1.8588 -2.3854 -6.5835 22 9 2.2428 -3.2599 -7.6057 23 9 0.5675 -1.8585 -6.6928 24 6 0.0867 -3.4742 -2.1101 25 1 -0.9439 -3.6628 -2.4106 26 6 0.1550 -2.3359 -1.1189 27 1 -0.4849 0.8401 0.0004 28 1 1.1476 -4.0908 0.8873 29 1 2.8130 -3.4708 0.7428 30 1 2.4779 -5.5372 -0.6201 31 1 2.8641 -4.1307 -1.6411 32 1 0.2357 -5.3082 -3.8123 33 1 2.0277 -5.2145 -3.5361 34 1 2.6448 -0.4842 -5.6680 35 1 3.9503 -1.5758 -6.3789 36 1 0.1286 -1.3928 -1.6647 37 1 -0.7168 -2.3857 -0.4664 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084329103.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:27:19 Heat of formation + Delta-G solvation = -48.912106 kcal Electronic energy + Delta-G solvation = -24004.944373 eV Core-core repulsion = 20227.779513 eV Total energy + Delta-G solvation = -3777.164859 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.123 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.85344 -48.53252 -41.96160 -39.66439 -37.07193 -36.50084 -33.98712 -31.93354 -30.81596 -28.66539 -25.89106 -25.59873 -23.85111 -23.64349 -22.61524 -21.09202 -19.68708 -19.25952 -18.42860 -17.97420 -17.32749 -17.28465 -17.05760 -16.67351 -16.05272 -15.52587 -15.19653 -15.01652 -14.97700 -14.75210 -14.69186 -14.55457 -14.35743 -14.02695 -13.60686 -13.27913 -13.15810 -12.78880 -12.69055 -12.44341 -12.24704 -12.17747 -11.96738 -11.74539 -11.49628 -11.30273 -11.10177 -10.72624 -10.40724 -9.58656 -8.67208 -7.84812 -5.28352 1.15108 1.36147 1.41929 1.48433 1.75308 1.94186 2.34744 2.48869 3.10369 3.15781 3.30292 3.42784 3.43985 3.71318 3.72809 3.98179 4.18624 4.32986 4.47101 4.52446 4.55988 4.57942 4.69967 4.75380 4.75931 4.83008 4.94588 5.08241 5.13901 5.32718 5.41048 5.57725 5.70131 5.82290 6.40268 6.88648 7.19214 7.19655 7.96758 8.35476 9.19798 Molecular weight = 286.12amu Principal moments of inertia in cm(-1) A = 0.015764 B = 0.007009 C = 0.005488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.787307 B = 3994.057848 C = 5101.109320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.048 4.048 3 Si 0.956 3.044 4 H -0.264 1.264 5 H -0.304 1.304 6 H -0.287 1.287 7 C -0.253 4.253 8 H 0.063 0.937 9 N -0.602 5.602 10 C 0.137 3.863 11 C -0.103 4.103 12 C -0.100 4.100 13 H 0.131 0.869 14 C 0.108 3.892 15 N -0.635 5.635 16 C 0.552 3.448 17 O -0.571 6.571 18 C -0.177 4.177 19 H 0.181 0.819 20 C -0.129 4.129 21 C 0.214 3.786 22 F -0.149 7.149 23 F -0.174 7.174 24 C 0.104 3.896 25 H 0.087 0.913 26 C 0.180 3.820 27 H 0.243 0.757 28 H 0.025 0.975 29 H 0.053 0.947 30 H 0.102 0.898 31 H 0.047 0.953 32 H 0.110 0.890 33 H 0.105 0.895 34 H 0.113 0.887 35 H 0.174 0.826 36 H 0.051 0.949 37 H -0.007 1.007 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.090 -14.773 -11.584 19.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.243 4.243 3 Si 0.785 3.215 4 H -0.188 1.188 5 H -0.231 1.231 6 H -0.214 1.214 7 C -0.383 4.383 8 H 0.081 0.919 9 N -0.325 5.325 10 C 0.013 3.987 11 C -0.142 4.142 12 C -0.119 4.119 13 H 0.149 0.851 14 C -0.013 4.013 15 N -0.369 5.369 16 C 0.341 3.659 17 O -0.450 6.450 18 C -0.198 4.198 19 H 0.199 0.801 20 C -0.167 4.167 21 C 0.177 3.823 22 F -0.129 7.129 23 F -0.155 7.155 24 C 0.000 4.000 25 H 0.105 0.895 26 C 0.053 3.947 27 H 0.052 0.948 28 H 0.043 0.957 29 H 0.071 0.929 30 H 0.120 0.880 31 H 0.066 0.934 32 H 0.128 0.872 33 H 0.123 0.877 34 H 0.131 0.869 35 H 0.192 0.808 36 H 0.069 0.931 37 H 0.010 0.990 Dipole moment (debyes) X Y Z Total from point charges 5.914 -13.891 -11.598 19.038 hybrid contribution -0.433 1.588 0.044 1.647 sum 5.482 -12.303 -11.553 17.745 Atomic orbital electron populations 1.70189 1.06541 1.24991 1.56438 1.25642 0.95988 1.01139 1.01521 0.85366 0.78920 0.80885 0.76315 1.18784 1.23134 1.21359 1.19436 0.91850 0.86058 1.40987 0.91932 1.43714 1.29626 1.02610 1.56554 1.20997 0.97038 0.86014 0.94701 1.21714 0.95260 1.00081 0.97131 1.22800 0.97934 0.95526 0.95611 0.85089 1.23588 1.04516 0.77741 0.95477 1.49558 1.48166 1.08461 1.30704 1.19289 0.80720 0.83635 0.82287 1.90791 1.61753 1.21939 1.70519 1.23686 1.01932 1.05650 0.88581 0.80137 1.24460 0.99865 0.96618 0.95758 1.19802 0.81080 0.95571 0.85871 1.93052 1.90105 1.69454 1.60306 1.93033 1.39574 1.86329 1.96516 1.22718 0.94652 0.97034 0.85641 0.89548 1.19794 0.87536 0.96654 0.90679 0.94804 0.95679 0.92886 0.87964 0.93411 0.87166 0.87699 0.86897 0.80813 0.93063 0.98963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -60.16 10.94 21.65 0.24 -59.93 16 2 C -0.05 -2.92 4.94 84.86 0.42 -2.50 16 3 Si 0.96 49.63 29.58 68.60 2.03 51.66 16 4 H -0.26 -12.81 7.11 99.48 0.71 -12.10 16 5 H -0.30 -16.38 7.11 99.48 0.71 -15.67 16 6 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 7 C -0.25 -14.76 9.53 84.03 0.80 -13.96 16 8 H 0.06 3.56 7.83 -2.91 -0.02 3.54 16 9 N -0.60 -31.00 3.03 -707.21 -2.14 -33.15 16 10 C 0.14 5.37 6.46 86.42 0.56 5.93 16 11 C -0.10 -2.87 5.70 30.66 0.17 -2.69 16 12 C -0.10 -2.51 4.57 -10.59 -0.05 -2.56 16 13 H 0.13 2.42 8.14 -2.39 -0.02 2.40 16 14 C 0.11 2.22 7.77 81.09 0.63 2.85 16 15 N -0.63 -21.61 3.33 -866.22 -2.89 -24.50 16 16 C 0.55 21.29 7.43 87.66 0.65 21.94 16 17 O -0.57 -29.42 15.50 -3.02 -0.05 -29.46 16 18 C -0.18 -4.59 6.03 -11.54 -0.07 -4.66 16 19 H 0.18 3.16 8.14 -2.39 -0.02 3.14 16 20 C -0.13 -2.98 10.02 30.61 0.31 -2.67 16 21 C 0.21 5.49 5.20 30.61 0.16 5.65 16 22 F -0.15 -3.32 17.60 44.97 0.79 -2.53 16 23 F -0.17 -5.77 17.13 44.97 0.77 -5.00 16 24 C 0.10 3.84 4.03 38.68 0.16 4.00 16 25 H 0.09 2.93 8.14 -2.39 -0.02 2.92 16 26 C 0.18 9.27 4.59 85.91 0.39 9.67 16 27 H 0.24 15.34 8.31 -92.71 -0.77 14.57 16 28 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.05 2.06 7.87 -2.38 -0.02 2.04 16 30 H 0.10 2.00 8.14 -2.38 -0.02 1.98 16 31 H 0.05 1.47 7.68 -2.39 -0.02 1.46 16 32 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.10 1.56 8.05 -2.39 -0.02 1.54 16 34 H 0.11 3.23 7.67 -2.39 -0.02 3.21 16 35 H 0.17 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.05 3.19 4.95 -2.39 -0.01 3.18 16 37 H -0.01 -0.42 8.00 -2.39 -0.02 -0.44 16 Total: -1.00 -82.88 312.05 3.97 -78.91 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: 1.09 Total: 2.99 kcal Atomic # 6 Polarization: 16.87 SS G_CDS: 4.13 Total: 21.00 kcal Atomic # 7 Polarization: -112.77 SS G_CDS: -4.79 Total: -117.57 kcal Atomic # 8 Polarization: -29.42 SS G_CDS: -0.05 Total: -29.46 kcal Atomic # 9 Polarization: -9.09 SS G_CDS: 1.56 Total: -7.53 kcal Atomic # 14 Polarization: 49.63 SS G_CDS: 2.03 Total: 51.66 kcal Total: -82.88 3.97 -78.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084329103.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.000 kcal (2) G-P(sol) polarization free energy of solvation -82.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds