Wall clock time and date at job start Tue Mar 31 2020 03:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.87160 * 2 1 4 4 C 1.54315 * 109.88156 * 238.98260 * 2 1 3 5 5 H 1.09005 * 110.72207 * 336.75541 * 4 2 1 6 6 N 1.46497 * 110.72358 * 100.02690 * 4 2 1 7 7 C 1.34776 * 120.00425 * 199.97490 * 6 4 2 8 8 O 1.21282 * 120.00025 * 0.02562 * 7 6 4 9 9 C 1.50705 * 120.00154 * 179.97438 * 7 6 4 10 10 F 1.39901 * 110.43573 * 308.91359 * 9 7 6 11 11 C 1.54809 * 110.48620 * 186.22200 * 9 7 6 12 12 C 1.55002 * 102.09042 * 220.44211 * 11 9 7 13 13 O 1.44380 * 103.48808 * 37.02511 * 12 11 9 14 14 C 1.43745 * 106.97598 * 319.93812 * 13 12 11 15 15 C 1.55156 * 102.94436 * 218.38969 * 4 2 1 16 16 C 1.54906 * 101.61451 * 35.48113 * 15 4 2 17 17 N 1.47017 * 109.88216 * 121.17092 * 2 1 3 18 18 C 1.36936 * 125.65385 * 298.41863 * 17 2 1 19 19 H 1.08001 * 119.99967 * 359.97438 * 18 17 2 20 20 C 1.38816 * 120.00461 * 180.02562 * 18 17 2 21 21 N 1.31616 * 119.99418 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00126 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47218 * 59.99220 * 22 20 18 24 24 H 1.48504 * 109.46785 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.46751 * 299.99456 * 22 20 18 26 26 H 1.09001 * 109.47001 * 181.02018 * 1 2 3 27 27 H 1.09003 * 109.47113 * 301.01603 * 1 2 3 28 28 H 1.09000 * 109.46955 * 61.01187 * 1 2 3 29 29 H 0.97005 * 119.99905 * 19.97312 * 6 4 2 30 30 H 1.09000 * 110.90985 * 338.64167 * 11 9 7 31 31 H 1.09007 * 110.90417 * 102.25116 * 11 9 7 32 32 H 1.08993 * 110.62281 * 278.52727 * 12 11 9 33 33 H 1.08996 * 110.61394 * 155.52480 * 12 11 9 34 34 H 1.08997 * 109.87525 * 267.08478 * 14 13 12 35 35 H 1.09001 * 109.87846 * 145.93745 * 14 13 12 36 36 H 1.09002 * 111.00677 * 153.57697 * 15 4 2 37 37 H 1.09002 * 111.00564 * 277.38955 * 15 4 2 38 38 H 1.09008 * 110.36753 * 81.85112 * 16 15 4 39 39 H 1.09001 * 110.37094 * 204.16995 * 16 15 4 40 40 H 0.97005 * 119.99622 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7478 -1.2437 5 1 1.3051 -1.4437 -1.6202 6 7 2.4555 0.1991 -2.2872 7 6 2.5559 -0.2111 -3.5671 8 8 2.3142 -1.3642 -3.8550 9 6 2.9675 0.7632 -4.6406 10 9 2.1814 1.9188 -4.5790 11 6 2.8614 0.1061 -6.0383 12 6 4.1350 0.6372 -6.7443 13 8 5.1222 0.6532 -5.6908 14 6 4.4606 1.1187 -4.5026 15 6 3.2876 -1.5133 -0.6945 16 6 2.8156 -1.8804 0.7345 17 7 2.0300 -0.7156 1.1829 18 6 1.8035 -0.3600 2.4858 19 1 1.2121 0.5150 2.7117 20 6 2.3349 -1.1235 3.5162 21 7 3.0561 -2.1895 3.2408 22 14 2.0264 -0.6379 5.2934 23 1 0.5658 -0.6409 5.5610 24 1 2.6966 -1.6090 6.1952 25 1 2.5714 0.7219 5.5366 26 1 -0.3633 -1.0275 0.0183 27 1 -0.3633 0.5295 0.8808 28 1 -0.3633 0.4980 -0.8989 29 1 2.6485 1.1215 -2.0570 30 1 2.8848 -0.9809 -5.9599 31 1 1.9620 0.4381 -6.5570 32 1 3.9689 1.6431 -7.1298 33 1 4.4391 -0.0366 -7.5452 34 1 4.5777 2.1986 -4.4122 35 1 4.8800 0.6237 -3.6268 36 1 3.4852 -2.4093 -1.2829 37 1 4.1656 -0.8681 -0.6622 38 1 2.1900 -2.7727 0.7099 39 1 3.6731 -2.0353 1.3893 40 1 3.4271 -2.7232 3.9608 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088817004.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:07 Heat of formation + Delta-G solvation = -98.345064 kcal Electronic energy + Delta-G solvation = -23690.594555 eV Core-core repulsion = 20034.746427 eV Total energy + Delta-G solvation = -3655.848128 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 286.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.24546 -40.21224 -38.90405 -37.55781 -34.22357 -32.26362 -31.87525 -30.44744 -29.77449 -28.52327 -25.22151 -24.05312 -23.73816 -22.56791 -20.57142 -20.24340 -19.68368 -18.02950 -17.25002 -16.92607 -16.51678 -15.91051 -15.46216 -14.95769 -14.80454 -14.71992 -14.50787 -14.06343 -13.86431 -13.51452 -13.34991 -12.87660 -12.44193 -12.19399 -12.08736 -11.92364 -11.89615 -11.62711 -11.19641 -11.17116 -10.89400 -10.86763 -10.61661 -10.52025 -10.21593 -10.15080 -9.85182 -9.74047 -9.59420 -8.83118 -8.68225 -6.92359 -5.69174 -3.12372 2.32730 2.89284 3.38006 3.42381 3.43705 3.44223 3.68002 3.94520 4.36005 4.46411 4.50070 4.66750 4.81552 5.15544 5.19676 5.30448 5.31785 5.37135 5.45245 5.47123 5.56208 5.71499 5.73284 6.05778 6.14713 6.23076 6.27779 6.33551 6.44452 6.51934 6.64148 6.79600 7.00953 7.42123 7.49604 7.58080 7.80656 8.05293 8.30637 9.16494 9.77305 10.40632 11.34185 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.034309 B = 0.003781 C = 0.003689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.923553 B = 7403.283383 C = 7588.654020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.156 3.844 3 H 0.037 0.963 4 C 0.133 3.867 5 H 0.094 0.906 6 N -0.702 5.702 7 C 0.507 3.493 8 O -0.519 6.519 9 C 0.068 3.932 10 F -0.184 7.184 11 C -0.166 4.166 12 C 0.046 3.954 13 O -0.364 6.364 14 C 0.035 3.965 15 C -0.153 4.153 16 C 0.153 3.847 17 N -0.595 5.595 18 C -0.223 4.223 19 H 0.077 0.923 20 C -0.009 4.009 21 N -0.921 5.921 22 Si 0.915 3.085 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.285 1.285 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.038 0.962 29 H 0.402 0.598 30 H 0.116 0.884 31 H 0.099 0.901 32 H 0.067 0.933 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.105 0.895 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.015 0.985 39 H 0.110 0.890 40 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.002 6.998 -17.399 18.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.048 3.952 3 H 0.054 0.946 4 C 0.029 3.971 5 H 0.112 0.888 6 N -0.352 5.352 7 C 0.290 3.710 8 O -0.395 6.395 9 C 0.046 3.954 10 F -0.165 7.165 11 C -0.204 4.204 12 C -0.030 4.030 13 O -0.282 6.282 14 C -0.042 4.042 15 C -0.193 4.193 16 C 0.028 3.972 17 N -0.320 5.320 18 C -0.351 4.351 19 H 0.095 0.905 20 C -0.204 4.204 21 N -0.569 5.569 22 Si 0.745 3.255 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.211 1.211 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.057 0.943 29 H 0.237 0.763 30 H 0.134 0.866 31 H 0.118 0.882 32 H 0.086 0.914 33 H 0.122 0.878 34 H 0.104 0.896 35 H 0.123 0.877 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.033 0.967 39 H 0.128 0.872 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.081 6.042 -17.358 18.411 hybrid contribution -0.542 0.898 1.093 1.515 sum 0.539 6.939 -16.265 17.692 Atomic orbital electron populations 1.22254 0.97775 1.01502 1.00039 1.20973 0.92704 0.94781 0.86765 0.94568 1.22267 0.97912 0.90671 0.86267 0.88816 1.46076 1.67887 1.14442 1.06773 1.20201 0.78483 0.88796 0.83553 1.90725 1.48705 1.18373 1.81651 1.22580 0.92310 0.82834 0.97713 1.92937 1.75961 1.50123 1.97436 1.23701 1.00514 1.04403 0.91750 1.23662 0.86813 1.01264 0.91309 1.88952 1.33266 1.87538 1.18448 1.23772 0.88329 1.01385 0.90760 1.23415 0.96550 0.99373 0.99918 1.21973 0.97444 0.88414 0.89376 1.44484 1.59226 1.28250 1.00024 1.18979 1.27349 1.08345 0.80453 0.90473 1.24787 1.00236 0.97331 0.98085 1.69778 1.38908 1.17820 1.30388 0.86151 0.77666 0.77443 0.84205 1.21207 1.21556 1.21147 0.92869 0.92580 0.94294 0.76338 0.86567 0.88249 0.91430 0.87764 0.89604 0.87679 0.91810 0.91889 0.96666 0.87198 0.93591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 9.13 37.16 0.34 -2.52 16 2 C 0.16 3.07 3.48 -66.96 -0.23 2.83 16 3 H 0.04 0.69 7.68 -51.93 -0.40 0.30 16 4 C 0.13 2.36 2.76 -66.10 -0.18 2.18 16 5 H 0.09 1.78 7.41 -51.93 -0.38 1.39 16 6 N -0.70 -10.14 5.20 -52.03 -0.27 -10.41 16 7 C 0.51 7.36 6.66 -10.98 -0.07 7.29 16 8 O -0.52 -9.12 15.15 5.56 0.08 -9.04 16 9 C 0.07 0.77 1.55 -90.24 -0.14 0.63 16 10 F -0.18 -2.12 16.86 2.25 0.04 -2.08 16 11 C -0.17 -1.63 6.38 -24.72 -0.16 -1.79 16 12 C 0.05 0.39 7.72 38.21 0.29 0.68 16 13 O -0.36 -4.10 11.52 -35.23 -0.41 -4.51 16 14 C 0.04 0.37 7.22 37.73 0.27 0.64 16 15 C -0.15 -2.95 6.76 -24.58 -0.17 -3.12 16 16 C 0.15 3.66 5.89 -2.50 -0.01 3.64 16 17 N -0.59 -14.55 3.13 -162.54 -0.51 -15.05 16 18 C -0.22 -5.98 9.89 -15.06 -0.15 -6.13 16 19 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 20 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 21 N -0.92 -26.28 10.09 55.49 0.56 -25.72 16 22 Si 0.92 21.63 29.55 -169.99 -5.02 16.61 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 26 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.06 1.06 8.04 -51.93 -0.42 0.64 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.40 4.96 8.31 -40.82 -0.34 4.62 16 30 H 0.12 1.31 6.81 -51.93 -0.35 0.96 16 31 H 0.10 0.83 8.12 -51.92 -0.42 0.41 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.09 0.74 8.03 -51.93 -0.42 0.32 16 35 H 0.11 1.11 7.68 -51.93 -0.40 0.71 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 38 H 0.02 0.39 8.14 -51.92 -0.42 -0.03 16 39 H 0.11 2.95 5.88 -51.93 -0.31 2.64 16 40 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 326.84 15.07 4.93 4.93 Total: -1.00 -30.60 326.84 -6.85 -37.45 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -5.94 Total: 3.85 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: -0.30 Total: 3.99 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: -0.22 Total: -51.19 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: -0.32 Total: -13.55 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.04 Total: -2.08 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.60 -6.85 -37.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088817004.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.899 kcal (2) G-P(sol) polarization free energy of solvation -30.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds