Wall clock time and date at job start Tue Mar 31 2020 03:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99635 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00020 * 3 2 1 5 5 H 1.48499 * 109.47352 * 30.00173 * 3 2 1 6 6 H 1.48505 * 109.47119 * 150.00177 * 3 2 1 7 7 C 1.38811 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99670 * 179.97438 * 7 2 1 9 9 N 1.36929 * 120.00157 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00268 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47555 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47555 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00199 * 180.02562 * 12 11 10 14 14 O 1.21283 * 119.99750 * 359.97438 * 13 12 11 15 15 C 1.50702 * 119.99928 * 180.27479 * 13 12 11 16 16 C 1.52996 * 109.47159 * 179.72352 * 15 13 12 17 17 O 1.42898 * 109.47180 * 179.97438 * 16 15 13 18 18 C 1.42904 * 113.99948 * 179.97438 * 17 16 15 19 19 C 1.52998 * 109.47095 * 180.02562 * 18 17 16 20 20 H 1.08999 * 109.82021 * 305.56329 * 19 18 17 21 21 C 1.54376 * 109.82889 * 184.58788 * 19 18 17 22 22 C 1.55311 * 102.25187 * 219.12510 * 21 19 18 23 23 C 1.54950 * 100.93700 * 34.13451 * 22 21 19 24 24 O 1.43234 * 109.83169 * 66.45242 * 19 18 17 25 25 H 0.97004 * 120.00691 * 359.97438 * 1 2 3 26 26 H 0.97000 * 120.00254 * 0.02562 * 9 7 2 27 27 H 1.08998 * 109.47134 * 59.99418 * 10 9 7 28 28 H 1.09005 * 109.46544 * 299.99525 * 10 9 7 29 29 H 1.08998 * 109.47382 * 59.99561 * 11 10 9 30 30 H 1.09002 * 109.47216 * 299.99998 * 11 10 9 31 31 H 0.97000 * 119.99484 * 359.97438 * 12 11 10 32 32 H 1.09004 * 109.46965 * 299.72211 * 15 13 12 33 33 H 1.08994 * 109.46990 * 59.72065 * 15 13 12 34 34 H 1.09004 * 109.47066 * 299.99797 * 16 15 13 35 35 H 1.09000 * 109.47234 * 59.99288 * 16 15 13 36 36 H 1.09007 * 109.47093 * 300.00015 * 18 17 16 37 37 H 1.08994 * 109.46971 * 59.99650 * 18 17 16 38 38 H 1.09002 * 110.85313 * 337.31608 * 21 19 18 39 39 H 1.08999 * 110.84917 * 100.93723 * 21 19 18 40 40 H 1.08995 * 111.12557 * 276.21263 * 22 21 19 41 41 H 1.09001 * 111.16003 * 152.06338 * 22 21 19 42 42 H 1.09003 * 110.30646 * 204.63610 * 23 22 21 43 43 H 1.08998 * 110.39416 * 82.51465 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.0640 -4.8197 -0.0012 12 7 1.7965 -6.0884 -0.0006 13 6 1.1227 -7.2556 -0.0015 14 8 -0.0902 -7.2556 -0.0024 15 6 1.8762 -8.5607 0.0054 16 6 0.8821 -9.7236 0.0097 17 8 1.5966 -10.9611 0.0157 18 6 0.7567 -12.1173 0.0207 19 6 1.6239 -13.3777 0.0274 20 1 2.3253 -13.3481 -0.8064 21 6 0.7283 -14.6302 -0.0833 22 6 1.4291 -15.6230 0.8838 23 6 1.9513 -14.6530 1.9734 24 8 2.3419 -13.4669 1.2636 25 1 -0.4851 0.8400 0.0004 26 1 0.3556 -2.3881 -0.0005 27 1 2.6849 -3.7144 0.8894 28 1 2.6847 -3.7144 -0.8906 29 1 0.4376 -4.7618 -0.8913 30 1 0.4370 -4.7622 0.8886 31 1 2.7665 -6.0883 -0.0002 32 1 2.5039 -8.6225 -0.8837 33 1 2.5019 -8.6142 0.8962 34 1 0.2544 -9.6618 0.8988 35 1 0.2563 -9.6700 -0.8811 36 1 0.1270 -12.1051 0.9104 37 1 0.1277 -12.1132 -0.8695 38 1 -0.2859 -14.4128 0.2518 39 1 0.7267 -15.0171 -1.1023 40 1 2.2524 -16.1383 0.3891 41 1 0.7169 -16.3352 1.3006 42 1 2.8096 -15.0869 2.4863 43 1 1.1608 -14.4232 2.6878 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130688538.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:23 Heat of formation + Delta-G solvation = -154.215049 kcal Electronic energy + Delta-G solvation = -21504.777016 eV Core-core repulsion = 17969.966488 eV Total energy + Delta-G solvation = -3534.810528 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.90097 -40.49893 -38.59354 -37.32465 -35.50560 -33.50318 -33.15869 -32.78541 -31.14478 -29.34764 -26.52238 -25.74855 -24.34228 -23.02092 -22.61711 -22.12466 -21.29049 -19.32632 -18.49104 -18.08748 -17.26517 -17.12028 -17.06201 -16.65905 -16.50986 -16.40438 -15.83365 -15.40669 -15.22254 -15.01095 -14.72457 -14.37151 -14.35165 -13.74676 -13.54645 -13.07291 -13.04399 -12.67633 -12.66299 -12.52096 -12.40195 -12.31588 -12.18843 -12.08271 -12.05196 -11.86674 -11.70800 -11.05115 -10.99455 -10.65396 -10.47929 -10.16223 -9.06980 -7.97185 -5.28681 1.48590 1.51019 1.56660 1.59448 1.90485 2.54903 2.72546 2.96568 3.37097 3.56281 3.70897 3.81746 3.95639 4.00947 4.02861 4.11924 4.17187 4.20545 4.21974 4.31693 4.39565 4.47383 4.51739 4.59751 4.63363 4.79543 4.81234 4.82971 4.90988 4.95547 5.03434 5.04469 5.13183 5.25614 5.36796 5.48856 6.03590 6.21668 6.23494 6.50646 7.19135 7.29807 8.01696 8.24648 9.26415 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.068850 B = 0.001794 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.582770 B =15605.480511 C =15803.952025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.077 4.077 3 Si 0.980 3.020 4 H -0.286 1.286 5 H -0.296 1.296 6 H -0.266 1.266 7 C -0.250 4.250 8 H 0.083 0.917 9 N -0.747 5.747 10 C 0.148 3.852 11 C 0.127 3.873 12 N -0.709 5.709 13 C 0.515 3.485 14 O -0.590 6.590 15 C -0.126 4.126 16 C 0.080 3.920 17 O -0.395 6.395 18 C 0.048 3.952 19 C 0.078 3.922 20 H 0.086 0.914 21 C -0.145 4.145 22 C -0.149 4.149 23 C 0.035 3.965 24 O -0.401 6.401 25 H 0.252 0.748 26 H 0.374 0.626 27 H 0.038 0.962 28 H 0.039 0.961 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.419 0.581 32 H 0.126 0.874 33 H 0.121 0.879 34 H 0.045 0.955 35 H 0.053 0.947 36 H 0.050 0.950 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.103 0.897 40 H 0.085 0.915 41 H 0.102 0.898 42 H 0.092 0.908 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.275 -34.101 0.111 34.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.808 3.192 4 H -0.213 1.213 5 H -0.223 1.223 6 H -0.191 1.191 7 C -0.381 4.381 8 H 0.101 0.899 9 N -0.391 5.391 10 C 0.021 3.979 11 C 0.002 3.998 12 N -0.362 5.362 13 C 0.303 3.697 14 O -0.470 6.470 15 C -0.166 4.166 16 C 0.003 3.997 17 O -0.315 6.315 18 C -0.029 4.029 19 C 0.020 3.980 20 H 0.104 0.896 21 C -0.182 4.182 22 C -0.187 4.187 23 C -0.041 4.041 24 O -0.321 6.321 25 H 0.061 0.939 26 H 0.205 0.795 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.257 0.743 32 H 0.144 0.856 33 H 0.139 0.861 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.094 0.906 38 H 0.105 0.895 39 H 0.122 0.878 40 H 0.103 0.897 41 H 0.121 0.879 42 H 0.110 0.890 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.945 -33.855 0.193 34.214 hybrid contribution -0.352 1.197 0.022 1.248 sum 4.593 -32.658 0.215 32.980 Atomic orbital electron populations 1.69836 1.06841 1.26289 1.59114 1.25677 0.96442 1.01483 1.03303 0.85047 0.77689 0.78926 0.77489 1.21260 1.22296 1.19057 1.19668 0.91774 0.84891 1.41801 0.89869 1.42425 1.05751 1.01113 1.89794 1.20861 0.93610 0.84073 0.99335 1.21152 0.94822 0.82719 1.01103 1.45721 1.11381 1.04597 1.74503 1.20980 0.87653 0.86281 0.74818 1.90708 1.16191 1.88415 1.51725 1.21397 0.99036 0.88353 1.07766 1.22041 0.93607 0.83120 1.00950 1.87826 1.34401 1.13717 1.95566 1.23125 0.93244 0.85163 1.01356 1.22899 0.93890 0.93557 0.87653 0.89617 1.23140 0.99453 0.93042 1.02582 1.23270 1.01399 0.98003 0.95978 1.23622 1.00543 0.84697 0.95209 1.88510 1.65043 1.44975 1.33565 0.93911 0.79478 0.94424 0.94357 0.92803 0.92908 0.74314 0.85596 0.86061 0.93652 0.92887 0.93151 0.90643 0.89513 0.87832 0.89674 0.87928 0.88972 0.92096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.11 13.06 21.65 0.28 -59.83 16 2 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 3 Si 0.98 45.89 29.55 68.60 2.03 47.91 16 4 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 5 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.25 -13.89 9.99 84.03 0.84 -13.05 16 8 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 9 N -0.75 -38.25 5.60 -343.46 -1.92 -40.18 16 10 C 0.15 5.65 6.37 86.38 0.55 6.20 16 11 C 0.13 4.36 5.79 86.38 0.50 4.86 16 12 N -0.71 -18.24 5.56 -463.06 -2.57 -20.81 16 13 C 0.51 13.97 7.83 87.66 0.69 14.66 16 14 O -0.59 -21.49 15.98 -3.04 -0.05 -21.54 16 15 C -0.13 -2.39 6.07 29.85 0.18 -2.21 16 16 C 0.08 1.73 5.23 71.98 0.38 2.11 16 17 O -0.40 -8.64 10.33 -146.53 -1.51 -10.15 16 18 C 0.05 0.81 5.47 71.98 0.39 1.20 16 19 C 0.08 1.16 3.81 31.06 0.12 1.27 16 20 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 21 C -0.14 -1.16 6.54 31.86 0.21 -0.95 16 22 C -0.15 -1.04 7.16 32.05 0.23 -0.81 16 23 C 0.04 0.43 7.78 72.65 0.56 0.99 16 24 O -0.40 -7.88 11.00 -146.53 -1.61 -9.49 16 25 H 0.25 15.11 8.31 -92.71 -0.77 14.33 16 26 H 0.37 20.68 7.67 -92.71 -0.71 19.97 16 27 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 29 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.05 1.99 8.14 -2.39 -0.02 1.98 16 31 H 0.42 7.77 8.47 -92.71 -0.79 6.98 16 32 H 0.13 1.83 8.14 -2.38 -0.02 1.81 16 33 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.05 1.08 8.10 -2.38 -0.02 1.06 16 35 H 0.05 1.18 8.10 -2.39 -0.02 1.16 16 36 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 37 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.09 0.59 7.85 -2.39 -0.02 0.58 16 39 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 42 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -74.90 360.26 -0.74 -75.64 By element: Atomic # 1 Polarization: 28.64 SS G_CDS: -0.50 Total: 28.14 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: 5.12 Total: 10.31 kcal Atomic # 7 Polarization: -116.61 SS G_CDS: -4.21 Total: -120.82 kcal Atomic # 8 Polarization: -38.01 SS G_CDS: -3.17 Total: -41.18 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.91 kcal Total: -74.90 -0.74 -75.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130688538.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.575 kcal (2) G-P(sol) polarization free energy of solvation -74.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds