Wall clock time and date at job start Tue Mar 31 2020 02:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34225 * 117.00669 * 2 1 4 4 O 1.20825 * 119.99467 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00398 * 180.02562 * 3 2 1 6 6 N 1.46496 * 109.47290 * 179.97438 * 5 3 2 7 7 C 1.34777 * 120.00199 * 180.02562 * 6 5 3 8 8 O 1.21283 * 119.99969 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.00262 * 180.02562 * 7 6 5 10 10 H 1.09006 * 109.46940 * 299.99513 * 9 7 6 11 11 C 1.52997 * 109.47233 * 59.99257 * 9 7 6 12 12 N 1.46900 * 109.47423 * 179.97438 * 9 7 6 13 13 C 1.47958 * 110.99961 * 174.99552 * 12 9 7 14 14 C 1.53933 * 86.17823 * 222.41390 * 13 12 9 15 15 O 1.42904 * 113.73759 * 269.25746 * 14 13 12 16 16 C 1.50702 * 113.73068 * 138.07972 * 14 13 12 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 14 13 18 18 C 1.37884 * 119.99942 * 179.72127 * 16 14 13 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 14 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 14 21 21 H 1.48501 * 109.47188 * 90.00793 * 20 18 16 22 22 H 1.48501 * 109.47085 * 210.00372 * 20 18 16 23 23 H 1.48498 * 109.47634 * 330.00608 * 20 18 16 24 24 C 1.47961 * 111.00102 * 75.63640 * 12 9 7 25 25 H 1.09006 * 109.47022 * 59.99604 * 1 2 3 26 26 H 1.09000 * 109.47679 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46892 * 300.00354 * 1 2 3 28 28 H 1.09001 * 109.47261 * 60.00009 * 5 3 2 29 29 H 1.09000 * 109.47261 * 300.00143 * 5 3 2 30 30 H 0.97001 * 119.99900 * 359.97438 * 6 5 3 31 31 H 1.08996 * 109.47599 * 300.00385 * 11 9 7 32 32 H 1.08993 * 109.47027 * 60.00571 * 11 9 7 33 33 H 1.09005 * 109.46957 * 180.02562 * 11 9 7 34 34 H 1.09002 * 113.75733 * 108.09817 * 13 12 9 35 35 H 1.08999 * 113.76210 * 336.73515 * 13 12 9 36 36 H 0.96697 * 114.00189 * 178.10553 * 15 14 13 37 37 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 38 38 H 1.09003 * 113.75693 * 23.26419 * 24 12 9 39 39 H 1.09003 * 113.75376 * 251.90306 * 24 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2092 -0.0005 5 6 3.5664 1.2747 -0.0006 6 7 3.9819 2.6795 -0.0011 7 6 5.2923 2.9947 -0.0022 8 8 6.1275 2.1153 -0.0023 9 6 5.7197 4.4398 -0.0021 10 1 5.3292 4.9342 -0.8917 11 6 5.1737 5.1331 1.2477 12 7 7.1867 4.5167 -0.0028 13 6 7.6442 5.9186 -0.1232 14 6 8.6950 5.3824 -1.1120 15 8 9.9288 5.0103 -0.4945 16 6 8.8856 6.2542 -2.3264 17 1 8.3086 7.1606 -2.4365 18 6 9.8010 5.8980 -3.2941 19 7 10.5038 4.7946 -3.1599 20 14 10.0426 6.9826 -4.7955 21 1 11.1013 7.9859 -4.5163 22 1 10.4483 6.1439 -5.9519 23 1 8.7706 7.6804 -5.1122 24 6 7.7335 4.2025 -1.3413 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 3.9558 0.7807 -0.8908 29 1 3.9565 0.7804 0.8891 30 1 3.3139 3.3828 -0.0014 31 1 4.0852 5.0762 1.2487 32 1 5.5642 4.6388 2.1372 33 1 5.4825 6.1785 1.2475 34 1 8.0708 6.3217 0.7952 35 1 6.9100 6.5825 -0.5797 36 1 10.5815 4.6459 -1.1079 37 1 11.1476 4.5438 -3.8408 38 1 7.0254 4.3644 -2.1540 39 1 8.2315 3.2344 -1.3959 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169626340.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:09 Heat of formation + Delta-G solvation = -151.511326 kcal Electronic energy + Delta-G solvation = -23018.733177 eV Core-core repulsion = 19348.206797 eV Total energy + Delta-G solvation = -3670.526380 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 286.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.89171 -41.33307 -39.93389 -37.79748 -36.37842 -35.69095 -34.09801 -33.25034 -30.21437 -28.81104 -27.88673 -27.01289 -25.86580 -23.98147 -22.19710 -21.36388 -20.49011 -19.44318 -18.80025 -18.38535 -17.84211 -17.57520 -17.12464 -16.78926 -16.59544 -16.30251 -15.68609 -15.54650 -15.16722 -14.89541 -14.37053 -14.26301 -13.91289 -13.69656 -13.54621 -13.37793 -13.15471 -13.00232 -12.96929 -12.85685 -12.50498 -12.40176 -12.22168 -11.93286 -11.89638 -11.82184 -11.17912 -10.87044 -10.60793 -10.35368 -10.09780 -9.53685 -8.22250 -6.40944 0.92249 1.25873 1.43412 1.44855 1.54243 1.55010 2.17804 2.38631 2.97386 3.13742 3.51280 3.71827 3.94606 4.00924 4.14061 4.17894 4.24739 4.26573 4.31429 4.33074 4.45805 4.56946 4.70247 4.77501 4.86494 4.94524 5.07999 5.17593 5.20152 5.23045 5.40765 5.48657 5.76859 5.99511 6.17965 6.40709 6.49383 6.65321 7.13316 7.32189 7.55201 8.82604 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.026044 B = 0.003419 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.833424 B = 8187.802862 C = 8508.312018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.357 6.357 3 C 0.471 3.529 4 O -0.526 6.526 5 C 0.125 3.875 6 N -0.716 5.716 7 C 0.528 3.472 8 O -0.556 6.556 9 C 0.023 3.977 10 H 0.082 0.918 11 C -0.131 4.131 12 N -0.465 5.465 13 C 0.026 3.974 14 C 0.215 3.785 15 O -0.585 6.585 16 C -0.557 4.557 17 H 0.070 0.930 18 C 0.022 3.978 19 N -0.921 5.921 20 Si 0.970 3.030 21 H -0.275 1.275 22 H -0.283 1.283 23 H -0.264 1.264 24 C 0.007 3.993 25 H 0.065 0.935 26 H 0.133 0.867 27 H 0.067 0.933 28 H 0.117 0.883 29 H 0.122 0.878 30 H 0.418 0.582 31 H 0.091 0.909 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.381 0.619 37 H 0.273 0.727 38 H 0.055 0.945 39 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.154 -5.610 5.154 21.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.272 6.272 3 C 0.315 3.685 4 O -0.415 6.415 5 C 0.001 3.999 6 N -0.375 5.375 7 C 0.315 3.685 8 O -0.432 6.432 9 C -0.089 4.089 10 H 0.100 0.900 11 C -0.189 4.189 12 N -0.189 5.189 13 C -0.102 4.102 14 C 0.174 3.826 15 O -0.397 6.397 16 C -0.595 4.595 17 H 0.089 0.911 18 C -0.177 4.177 19 N -0.562 5.562 20 Si 0.795 3.205 21 H -0.201 1.201 22 H -0.209 1.209 23 H -0.188 1.188 24 C -0.123 4.123 25 H 0.084 0.916 26 H 0.151 0.849 27 H 0.086 0.914 28 H 0.134 0.866 29 H 0.140 0.860 30 H 0.257 0.743 31 H 0.110 0.890 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.235 0.765 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -19.815 -6.284 6.186 21.689 hybrid contribution -0.103 0.728 -2.051 2.179 sum -19.918 -5.555 4.135 21.088 Atomic orbital electron populations 1.23642 0.73838 1.06048 1.02915 1.86483 1.25618 1.31710 1.83370 1.23436 0.91596 0.81847 0.71635 1.90666 1.67233 1.36998 1.46599 1.20688 0.87005 0.84984 1.07227 1.45639 1.07351 1.07910 1.76605 1.20680 0.81573 0.91489 0.74762 1.90720 1.52510 1.50759 1.49249 1.22359 0.92295 0.92242 1.02046 0.90020 1.21753 1.01603 1.00993 0.94548 1.68473 1.06837 1.14969 1.28617 1.24079 0.96438 0.90300 0.99378 1.20182 0.82140 0.90349 0.89918 1.86018 1.27406 1.85229 1.41013 1.21942 1.23250 1.09415 1.04927 0.91137 1.25891 0.94580 0.96026 1.01233 1.69458 1.25564 1.24421 1.36786 0.85370 0.78739 0.78394 0.77986 1.20056 1.20861 1.18830 1.24361 0.98514 1.00372 0.89025 0.91646 0.84868 0.91443 0.86577 0.86007 0.74310 0.89044 0.92249 0.90386 0.90080 0.89363 0.76475 0.91761 0.92659 0.94003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 113.37 1.20 1.48 16 2 O -0.36 -5.69 10.56 -51.37 -0.54 -6.23 16 3 C 0.47 8.87 8.03 71.23 0.57 9.44 16 4 O -0.53 -11.91 15.42 21.97 0.34 -11.57 16 5 C 0.13 2.50 6.27 85.63 0.54 3.03 16 6 N -0.72 -17.03 5.42 -466.80 -2.53 -19.56 16 7 C 0.53 17.29 7.01 87.66 0.61 17.90 16 8 O -0.56 -23.33 15.85 -3.04 -0.05 -23.38 16 9 C 0.02 0.74 2.08 44.17 0.09 0.83 16 10 H 0.08 2.47 7.68 -2.38 -0.02 2.45 16 11 C -0.13 -3.18 9.07 71.98 0.65 -2.53 16 12 N -0.47 -19.83 5.61 -890.08 -4.99 -24.82 16 13 C 0.03 1.11 6.23 86.41 0.54 1.65 16 14 C 0.22 11.18 1.44 -10.90 -0.02 11.17 16 15 O -0.59 -33.47 13.48 -148.98 -2.01 -35.48 16 16 C -0.56 -29.80 8.62 25.60 0.22 -29.58 16 17 H 0.07 3.59 7.81 -2.91 -0.02 3.57 16 18 C 0.02 1.18 5.40 84.66 0.46 1.64 16 19 N -0.92 -51.24 11.08 21.45 0.24 -51.00 16 20 Si 0.97 41.83 29.54 68.60 2.03 43.85 16 21 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 22 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 23 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 24 C 0.01 0.34 6.49 86.40 0.56 0.90 16 25 H 0.06 0.67 8.13 -2.38 -0.02 0.65 16 26 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.07 0.66 8.13 -2.39 -0.02 0.64 16 28 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.42 8.53 6.86 -92.71 -0.64 7.89 16 31 H 0.09 1.60 7.57 -2.39 -0.02 1.58 16 32 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.08 1.79 7.33 -2.38 -0.02 1.77 16 34 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 35 H 0.09 3.27 7.80 -2.39 -0.02 3.25 16 36 H 0.38 22.45 6.45 -74.06 -0.48 21.97 16 37 H 0.27 14.32 8.31 -92.70 -0.77 13.55 16 38 H 0.06 2.66 7.65 -2.39 -0.02 2.64 16 39 H 0.04 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -70.46 332.04 -2.12 -72.58 By element: Atomic # 1 Polarization: 39.70 SS G_CDS: -0.03 Total: 39.67 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: 5.42 Total: 15.94 kcal Atomic # 7 Polarization: -88.10 SS G_CDS: -7.28 Total: -95.38 kcal Atomic # 8 Polarization: -74.40 SS G_CDS: -2.26 Total: -76.66 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.85 kcal Total: -70.46 -2.12 -72.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169626340.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.932 kcal (2) G-P(sol) polarization free energy of solvation -70.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds