Wall clock time and date at job start Tue Mar 31 2020 02:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34231 * 117.00192 * 2 1 4 4 O 1.20826 * 119.99793 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00272 * 180.02562 * 3 2 1 6 6 N 1.46495 * 109.47348 * 179.97438 * 5 3 2 7 7 C 1.34771 * 120.00103 * 180.02562 * 6 5 3 8 8 O 1.21283 * 119.99977 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.00230 * 179.97438 * 7 6 5 10 10 H 1.09005 * 109.46868 * 59.99253 * 9 7 6 11 11 C 1.53001 * 109.47188 * 299.99590 * 9 7 6 12 12 N 1.46901 * 109.47229 * 179.97438 * 9 7 6 13 13 C 1.47949 * 111.00147 * 290.53439 * 12 9 7 14 14 C 1.53944 * 86.18176 * 222.41706 * 13 12 9 15 15 O 1.42896 * 113.73247 * 269.25705 * 14 13 12 16 16 C 1.50693 * 113.73119 * 138.08046 * 14 13 12 17 17 H 1.08001 * 120.00774 * 5.17088 * 16 14 13 18 18 C 1.37881 * 119.99519 * 185.17432 * 16 14 13 19 19 N 1.31509 * 120.00156 * 14.53829 * 18 16 14 20 20 Si 1.86800 * 119.99827 * 194.54122 * 18 16 14 21 21 H 1.48506 * 109.47221 * 179.97438 * 20 18 16 22 22 H 1.48503 * 109.47224 * 299.99564 * 20 18 16 23 23 H 1.48501 * 109.47489 * 59.99818 * 20 18 16 24 24 C 1.47960 * 110.99938 * 191.17061 * 12 9 7 25 25 H 1.09002 * 109.47133 * 300.00889 * 1 2 3 26 26 H 1.09001 * 109.46870 * 60.00082 * 1 2 3 27 27 H 1.08994 * 109.47309 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46975 * 59.98799 * 5 3 2 29 29 H 1.09007 * 109.46660 * 299.99536 * 5 3 2 30 30 H 0.97001 * 120.00299 * 359.97438 * 6 5 3 31 31 H 1.08996 * 109.47310 * 184.59750 * 11 9 7 32 32 H 1.09003 * 109.46923 * 304.60939 * 11 9 7 33 33 H 1.09006 * 109.47097 * 64.59753 * 11 9 7 34 34 H 1.09008 * 113.76010 * 108.09928 * 13 12 9 35 35 H 1.08998 * 113.76246 * 336.73144 * 13 12 9 36 36 H 0.96695 * 113.99807 * 172.48208 * 15 14 13 37 37 H 0.96995 * 120.00258 * 356.66052 * 19 18 16 38 38 H 1.09001 * 113.75984 * 23.26989 * 24 12 9 39 39 H 1.08992 * 113.76502 * 251.90356 * 24 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2749 -0.0006 6 7 3.9818 2.6797 -0.0011 7 6 5.2921 2.9950 -0.0022 8 8 6.1274 2.1156 -0.0023 9 6 5.7194 4.4401 -0.0033 10 1 5.3302 4.9348 0.8867 11 6 5.1716 5.1330 -1.2526 12 7 7.1864 4.5170 -0.0037 13 6 7.7416 4.0617 1.2899 14 6 8.7022 5.2599 1.1820 15 8 9.9319 4.9536 0.5220 16 6 8.9007 5.9969 2.4814 17 1 8.4559 5.6191 3.3901 18 6 9.6502 7.1539 2.5100 19 7 9.9504 7.7709 1.3882 20 14 10.2392 7.8449 4.1425 21 1 11.0198 9.0852 3.9024 22 1 9.0675 8.1552 5.0004 23 1 11.0992 6.8433 4.8227 24 6 7.6451 5.8982 0.2628 25 1 -0.3633 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.9557 0.7808 -0.8907 29 1 3.9564 0.7806 0.8893 30 1 3.3137 3.3830 -0.0014 31 1 5.5477 6.1551 -1.2955 32 1 5.4943 4.5893 -2.1405 33 1 4.0825 5.1480 -1.2116 34 1 8.2397 3.0935 1.2377 35 1 7.0389 4.1357 2.1198 36 1 10.4887 5.7252 0.3497 37 1 9.6863 7.3866 0.5376 38 1 6.9141 6.5092 0.7923 39 1 8.0660 6.3973 -0.6099 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169626342.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:16 Heat of formation + Delta-G solvation = -154.139573 kcal Electronic energy + Delta-G solvation = -23048.368382 eV Core-core repulsion = 19377.728032 eV Total energy + Delta-G solvation = -3670.640349 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 286.141 amu Computer time = 4.65 seconds Orbital eigenvalues (eV) -41.96404 -41.47850 -40.09923 -37.82539 -36.74344 -35.74286 -34.27167 -33.41999 -30.24766 -28.48758 -27.91268 -27.21047 -25.85182 -24.06181 -22.23229 -21.46810 -20.77516 -19.91507 -19.01095 -18.46838 -17.86592 -17.64422 -17.15301 -16.88801 -16.52555 -16.09759 -15.87571 -15.60217 -15.30237 -14.98219 -14.62942 -14.27958 -14.12646 -13.79480 -13.69220 -13.53975 -13.31739 -13.01481 -13.00959 -12.70002 -12.59197 -12.31942 -12.23011 -11.92267 -11.91177 -11.84185 -11.07135 -10.90977 -10.70825 -10.40646 -10.19039 -9.63359 -8.68010 -6.46554 0.90643 1.22635 1.45866 1.55843 1.62409 1.83080 2.12445 2.52190 2.91392 3.01334 3.45487 3.62396 3.68271 3.89743 4.03726 4.07505 4.13698 4.15756 4.24622 4.28590 4.31684 4.42327 4.65670 4.69218 4.76133 4.77342 4.89879 5.04333 5.09462 5.17415 5.19949 5.31616 5.80027 6.02470 6.07535 6.31347 6.46249 6.48122 7.02652 7.04884 7.31201 8.64895 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.032137 B = 0.003252 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.056961 B = 8606.962276 C = 8781.880825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.356 6.356 3 C 0.470 3.530 4 O -0.527 6.527 5 C 0.126 3.874 6 N -0.715 5.715 7 C 0.531 3.469 8 O -0.553 6.553 9 C 0.022 3.978 10 H 0.080 0.920 11 C -0.130 4.130 12 N -0.461 5.461 13 C 0.040 3.960 14 C 0.195 3.805 15 O -0.575 6.575 16 C -0.639 4.639 17 H 0.052 0.948 18 C -0.008 4.008 19 N -0.914 5.914 20 Si 1.114 2.886 21 H -0.281 1.281 22 H -0.270 1.270 23 H -0.278 1.278 24 C -0.001 4.001 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.134 0.866 28 H 0.123 0.877 29 H 0.120 0.880 30 H 0.418 0.582 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.368 0.632 37 H 0.263 0.737 38 H 0.068 0.932 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.394 -10.558 -3.055 22.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.271 6.271 3 C 0.314 3.686 4 O -0.416 6.416 5 C 0.002 3.998 6 N -0.374 5.374 7 C 0.317 3.683 8 O -0.429 6.429 9 C -0.090 4.090 10 H 0.098 0.902 11 C -0.187 4.187 12 N -0.184 5.184 13 C -0.089 4.089 14 C 0.155 3.845 15 O -0.382 6.382 16 C -0.676 4.676 17 H 0.070 0.930 18 C -0.209 4.209 19 N -0.551 5.551 20 Si 0.936 3.064 21 H -0.206 1.206 22 H -0.195 1.195 23 H -0.203 1.203 24 C -0.130 4.130 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.152 0.848 28 H 0.141 0.859 29 H 0.138 0.862 30 H 0.257 0.743 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.112 0.888 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.216 0.784 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.334 -10.638 -2.985 21.406 hybrid contribution -1.331 -0.008 -0.104 1.335 sum -19.666 -10.647 -3.089 22.575 Atomic orbital electron populations 1.23641 0.73850 1.06064 1.02891 1.86482 1.25597 1.31675 1.83363 1.23468 0.91666 0.81843 0.71639 1.90674 1.67273 1.37048 1.46607 1.20712 0.86949 0.84746 1.07425 1.45628 1.07291 1.08081 1.76368 1.20508 0.81728 0.91098 0.74919 1.90717 1.52360 1.50514 1.49336 1.22366 0.92006 0.92649 1.01962 0.90197 1.21702 1.01726 1.00570 0.94747 1.68497 1.06966 1.11635 1.31315 1.23742 0.96031 0.98520 0.90568 1.20391 0.81794 0.92297 0.90012 1.86260 1.33188 1.37613 1.81123 1.22577 1.37793 1.12286 0.94971 0.92970 1.27185 0.92989 0.94029 1.06724 1.71016 1.47030 1.38311 0.98786 0.82954 0.76917 0.75745 0.70797 1.20603 1.19519 1.20325 1.24584 0.99078 0.90481 0.98849 0.91651 0.91510 0.84826 0.85903 0.86206 0.74337 0.91423 0.92024 0.88770 0.91796 0.91192 0.78434 0.92531 0.91376 0.91460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 113.37 1.20 1.46 16 2 O -0.36 -5.37 10.57 -51.43 -0.54 -5.91 16 3 C 0.47 8.42 8.03 71.24 0.57 8.99 16 4 O -0.53 -11.66 15.42 21.97 0.34 -11.32 16 5 C 0.13 2.32 6.27 85.63 0.54 2.86 16 6 N -0.72 -16.17 5.43 -466.79 -2.54 -18.71 16 7 C 0.53 16.54 6.95 87.66 0.61 17.15 16 8 O -0.55 -21.63 15.46 -3.04 -0.05 -21.68 16 9 C 0.02 0.72 2.07 44.17 0.09 0.81 16 10 H 0.08 2.46 7.69 -2.38 -0.02 2.44 16 11 C -0.13 -3.32 9.18 71.98 0.66 -2.66 16 12 N -0.46 -19.39 5.67 -889.98 -5.05 -24.43 16 13 C 0.04 1.87 6.08 86.41 0.53 2.40 16 14 C 0.20 10.06 1.07 -10.89 -0.01 10.05 16 15 O -0.58 -31.33 13.46 -148.98 -2.00 -33.34 16 16 C -0.64 -34.88 8.56 25.60 0.22 -34.66 16 17 H 0.05 2.84 7.86 -2.91 -0.02 2.82 16 18 C -0.01 -0.42 5.24 84.66 0.44 0.02 16 19 N -0.91 -50.98 13.05 21.45 0.28 -50.70 16 20 Si 1.11 47.78 29.93 68.60 2.05 49.83 16 21 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 22 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 23 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 24 C 0.00 -0.03 5.59 86.41 0.48 0.45 16 25 H 0.06 0.64 8.13 -2.39 -0.02 0.62 16 26 H 0.07 0.63 8.13 -2.39 -0.02 0.61 16 27 H 0.13 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.12 2.10 8.14 -2.38 -0.02 2.08 16 30 H 0.42 8.28 6.95 -92.71 -0.64 7.64 16 31 H 0.07 1.80 7.44 -2.39 -0.02 1.78 16 32 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.09 1.74 7.70 -2.38 -0.02 1.72 16 34 H 0.06 3.19 8.06 -2.38 -0.02 3.17 16 35 H 0.07 3.09 7.75 -2.39 -0.02 3.07 16 36 H 0.37 19.57 6.84 -74.06 -0.51 19.07 16 37 H 0.26 14.57 5.27 -92.71 -0.49 14.08 16 38 H 0.07 3.01 7.72 -2.39 -0.02 2.99 16 39 H 0.07 3.08 7.83 -2.39 -0.02 3.06 16 Total: -1.00 -70.26 329.85 -1.97 -72.23 By element: Atomic # 1 Polarization: 36.94 SS G_CDS: 0.21 Total: 37.16 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: 5.33 Total: 6.87 kcal Atomic # 7 Polarization: -86.54 SS G_CDS: -7.30 Total: -93.84 kcal Atomic # 8 Polarization: -69.99 SS G_CDS: -2.26 Total: -72.25 kcal Atomic # 14 Polarization: 47.78 SS G_CDS: 2.05 Total: 49.83 kcal Total: -70.26 -1.97 -72.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169626342.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.908 kcal (2) G-P(sol) polarization free energy of solvation -70.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.65 seconds