Wall clock time and date at job start Tue Mar 31 2020 03:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39556 * 120.14159 * 92.91655 * 3 2 1 5 5 C 1.37946 * 119.85462 * 179.97438 * 4 3 2 6 6 C 1.38371 * 120.14546 * 0.02562 * 5 4 3 7 7 C 1.38322 * 120.28253 * 0.02562 * 6 5 4 8 8 C 1.37992 * 120.14666 * 359.68983 * 7 6 5 9 9 C 1.50703 * 120.07882 * 180.27907 * 8 7 6 10 10 C 1.50696 * 109.47301 * 265.30317 * 9 8 7 11 11 O 1.21279 * 120.00345 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99835 * 180.02562 * 10 9 8 13 13 C 1.46503 * 120.00107 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47029 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.47071 * 179.97438 * 14 13 12 16 16 N 1.46493 * 109.47459 * 179.97438 * 15 14 13 17 17 C 1.36934 * 120.00367 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99938 * 0.02562 * 17 16 15 19 19 C 1.38818 * 120.00484 * 180.02562 * 17 16 15 20 20 N 1.31614 * 120.00453 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 119.99526 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.46619 * 89.99951 * 21 19 17 23 23 H 1.48497 * 109.47063 * 209.99544 * 21 19 17 24 24 H 1.48498 * 109.47434 * 330.00027 * 21 19 17 25 25 H 4.52083 * 14.01991 * 0.02562 * 4 2 1 26 26 H 1.07994 * 120.07089 * 359.95316 * 4 3 2 27 27 H 1.08005 * 119.93031 * 180.02562 * 5 4 3 28 28 H 1.08002 * 119.86212 * 179.97438 * 6 5 4 29 29 H 1.08005 * 119.93099 * 179.97438 * 7 6 5 30 30 H 1.08994 * 109.46589 * 25.30514 * 9 8 7 31 31 H 1.08997 * 109.46615 * 145.29847 * 9 8 7 32 32 H 0.97004 * 120.00200 * 359.97438 * 12 10 9 33 33 H 1.09001 * 109.46839 * 299.99751 * 13 12 10 34 34 H 1.08999 * 109.46923 * 59.99451 * 13 12 10 35 35 H 1.09001 * 109.47426 * 299.99782 * 14 13 12 36 36 H 1.08999 * 109.47397 * 60.00133 * 14 13 12 37 37 H 1.09001 * 109.47104 * 300.00330 * 15 14 13 38 38 H 1.09005 * 109.47038 * 59.99871 * 15 14 13 39 39 H 0.97003 * 119.99522 * 0.02562 * 16 15 14 40 40 H 0.96995 * 120.00394 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3067 0.0624 -1.2053 5 6 4.6862 0.0632 -1.1984 6 6 5.3751 0.0024 0.0001 7 6 4.6864 -0.0600 1.1981 8 6 3.3066 -0.0556 1.2053 9 6 2.5579 -0.1173 2.5117 10 6 2.2024 -1.5490 2.8199 11 8 2.5257 -2.4324 2.0544 12 7 1.5253 -1.8477 3.9463 13 6 1.1803 -3.2395 4.2463 14 6 0.4201 -3.3020 5.5725 15 6 0.0591 -4.7555 5.8855 16 7 -0.6682 -4.8155 7.1557 17 6 -1.0972 -6.0213 7.6428 18 1 -0.8989 -6.9281 7.0908 19 6 -1.7869 -6.0781 8.8462 20 7 -2.1987 -7.2370 9.3146 21 14 -2.1304 -4.5095 9.8006 22 1 -3.4321 -3.9413 9.3668 23 1 -2.1832 -4.8152 11.2528 24 1 -1.0494 -3.5251 9.5409 25 1 -1.0500 0.0005 0.0001 26 1 2.7702 0.1090 -2.1414 27 1 5.2297 0.1113 -2.1304 28 1 6.4551 0.0029 0.0002 29 1 5.2299 -0.1077 2.1302 30 1 3.1852 0.2811 3.3091 31 1 1.6462 0.4753 2.4363 32 1 1.2671 -1.1412 4.5588 33 1 0.5535 -3.6384 3.4486 34 1 2.0922 -3.8316 4.3223 35 1 1.0472 -2.9033 6.3700 36 1 -0.4919 -2.7098 5.4969 37 1 -0.5681 -5.1539 5.0880 38 1 0.9709 -5.3481 5.9610 39 1 -0.8466 -4.0010 7.6513 40 1 -2.6803 -7.2768 10.1557 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001174673897.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:51 Heat of formation + Delta-G solvation = 46.687961 kcal Electronic energy + Delta-G solvation = -20665.015719 eV Core-core repulsion = 17446.225919 eV Total energy + Delta-G solvation = -3218.789800 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.34052 -39.03459 -36.18770 -34.46712 -34.20366 -33.02917 -31.98479 -30.52097 -30.15620 -28.05338 -25.27821 -23.59459 -22.59984 -21.85494 -21.31909 -20.35149 -19.03950 -17.65284 -16.99543 -16.71902 -16.19849 -16.00937 -15.47507 -15.32289 -14.52913 -14.42591 -14.03780 -13.98515 -13.68272 -13.38050 -13.01852 -12.82007 -12.81617 -12.19395 -12.03204 -11.77792 -11.56616 -11.41038 -11.20630 -11.04805 -10.85338 -10.72038 -10.67740 -10.18695 -9.98144 -9.60849 -9.12893 -9.10546 -8.91785 -8.73940 -7.25990 -5.78099 -3.14305 0.65978 1.04351 2.49648 2.55489 2.76481 3.09957 3.34977 3.37260 3.43223 3.74064 4.01314 4.30548 4.50285 4.57157 4.71811 4.74618 4.88001 4.95665 5.07885 5.11901 5.19576 5.29104 5.37042 5.49265 5.52375 5.66936 5.79266 5.80410 5.91705 5.95397 6.09830 6.13190 6.16029 6.21565 6.38069 6.62058 6.67316 6.70400 7.28466 7.39819 7.98018 8.13854 8.40656 9.19323 9.91362 10.10915 11.40262 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.033993 B = 0.002424 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.499666 B =11548.647923 C =11731.265145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.147 4.147 3 C 0.024 3.976 4 C -0.096 4.096 5 C -0.120 4.120 6 C -0.110 4.110 7 C -0.107 4.107 8 C -0.042 4.042 9 C -0.107 4.107 10 C 0.514 3.486 11 O -0.530 6.530 12 N -0.730 5.730 13 C 0.123 3.877 14 C -0.141 4.141 15 C 0.160 3.840 16 N -0.757 5.757 17 C -0.246 4.246 18 H 0.091 0.909 19 C 0.003 3.997 20 N -0.934 5.934 21 Si 0.887 3.113 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.278 1.278 25 H 0.224 0.776 26 H 0.126 0.874 27 H 0.127 0.873 28 H 0.126 0.874 29 H 0.127 0.873 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.400 0.600 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.030 0.970 38 H 0.030 0.970 39 H 0.360 0.640 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.786 21.523 -19.394 31.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.147 4.147 3 C 0.024 3.976 4 C -0.114 4.114 5 C -0.138 4.138 6 C -0.128 4.128 7 C -0.125 4.125 8 C -0.042 4.042 9 C -0.146 4.146 10 C 0.299 3.701 11 O -0.406 6.406 12 N -0.382 5.382 13 C -0.001 4.001 14 C -0.179 4.179 15 C 0.033 3.967 16 N -0.403 5.403 17 C -0.375 4.375 18 H 0.109 0.891 19 C -0.193 4.193 20 N -0.582 5.582 21 Si 0.717 3.283 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.204 1.204 25 H 0.241 0.759 26 H 0.144 0.856 27 H 0.145 0.855 28 H 0.144 0.856 29 H 0.145 0.855 30 H 0.123 0.877 31 H 0.121 0.879 32 H 0.234 0.766 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.193 0.807 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 12.986 20.600 -19.928 31.466 hybrid contribution -0.682 1.297 1.146 1.861 sum 12.304 21.897 -18.781 31.363 Atomic orbital electron populations 1.24919 0.95799 0.99281 0.99184 1.19962 0.92012 1.01379 1.01371 1.15781 0.86542 1.02064 0.93246 1.21156 0.94262 0.99212 0.96806 1.21068 0.93834 1.00547 0.98357 1.21223 1.00113 0.99127 0.92290 1.20935 0.92910 0.99927 0.98681 1.19320 0.93434 0.98776 0.92687 1.20707 1.02212 0.95350 0.96380 1.20378 0.77928 0.90675 0.81097 1.90738 1.52948 1.49149 1.47741 1.46061 1.58223 1.10168 1.23750 1.21328 0.99878 0.81561 0.97285 1.21990 1.00148 1.00020 0.95782 1.20497 0.95319 0.92041 0.88891 1.42686 1.68550 1.06410 1.22617 1.19074 1.28912 0.85965 1.03591 0.89147 1.24698 1.00473 0.96384 0.97744 1.69700 1.43605 1.22923 1.21930 0.86508 0.78091 0.83862 0.79809 1.21074 1.21689 1.20395 0.75928 0.85622 0.85530 0.85607 0.85536 0.87651 0.87865 0.76638 0.91264 0.91229 0.91346 0.91362 0.95181 0.95225 0.80698 0.93024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.66 19.25 29.55 0.57 -1.10 16 2 C -0.15 -1.66 11.79 -38.84 -0.46 -2.12 16 3 C 0.02 0.27 5.72 -107.00 -0.61 -0.35 16 4 C -0.10 -0.92 9.75 -39.20 -0.38 -1.30 16 5 C -0.12 -0.97 10.03 -39.64 -0.40 -1.36 16 6 C -0.11 -0.88 10.04 -39.50 -0.40 -1.28 16 7 C -0.11 -0.96 9.67 -39.64 -0.38 -1.35 16 8 C -0.04 -0.44 4.41 -104.23 -0.46 -0.90 16 9 C -0.11 -0.95 5.34 -29.04 -0.16 -1.11 16 10 C 0.51 6.33 7.82 -10.99 -0.09 6.24 16 11 O -0.53 -8.84 16.03 5.56 0.09 -8.75 16 12 N -0.73 -7.95 5.56 -60.29 -0.33 -8.29 16 13 C 0.12 1.61 5.67 -4.04 -0.02 1.59 16 14 C -0.14 -1.99 5.44 -26.73 -0.15 -2.14 16 15 C 0.16 3.06 6.26 -4.05 -0.03 3.03 16 16 N -0.76 -18.06 5.41 -59.91 -0.32 -18.38 16 17 C -0.25 -7.05 10.47 -15.06 -0.16 -7.21 16 18 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 19 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 20 N -0.93 -29.54 13.97 55.49 0.78 -28.76 16 21 Si 0.89 22.01 27.74 -169.99 -4.71 17.30 16 22 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 24 H -0.28 -6.42 6.52 56.52 0.37 -6.05 16 25 H 0.22 1.32 7.80 -54.09 -0.42 0.90 16 26 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 27 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 28 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 29 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 30 H 0.11 0.64 8.05 -51.93 -0.42 0.22 16 31 H 0.10 0.81 7.28 -51.93 -0.38 0.43 16 32 H 0.40 3.19 8.47 -40.82 -0.35 2.85 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.36 8.25 5.53 -40.82 -0.23 8.03 16 40 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 LS Contribution 351.21 15.07 5.29 5.29 Total: -1.00 -36.20 351.21 -8.03 -44.24 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -5.61 Total: 6.71 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -3.21 Total: -9.35 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: 0.12 Total: -55.43 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.09 Total: -8.75 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.71 Total: 17.30 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -36.20 -8.03 -44.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174673897.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.927 kcal (2) G-P(sol) polarization free energy of solvation -36.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds