Wall clock time and date at job start Tue Mar 31 2020 04:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47277 * 2 1 4 4 O 1.42910 * 109.46814 * 119.99795 * 2 1 3 5 5 C 1.42895 * 113.99841 * 150.00165 * 4 2 1 6 6 C 1.53000 * 109.46900 * 179.97438 * 5 4 2 7 7 C 1.50704 * 109.46880 * 179.97438 * 6 5 4 8 8 O 1.21279 * 120.00048 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99643 * 179.97438 * 7 6 5 10 10 C 1.46505 * 119.99500 * 180.02562 * 9 7 6 11 11 H 1.09002 * 110.64189 * 34.30160 * 10 9 7 12 12 C 1.54321 * 110.72218 * 271.15678 * 10 9 7 13 13 N 1.47019 * 107.27531 * 219.26939 * 12 10 9 14 14 C 1.36931 * 125.65157 * 178.90454 * 13 12 10 15 15 H 1.08004 * 119.99907 * 0.02562 * 14 13 12 16 16 C 1.38813 * 120.00300 * 179.97438 * 14 13 12 17 17 N 1.31622 * 120.00014 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00112 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46942 * 90.00018 * 18 16 14 20 20 H 1.48499 * 109.46996 * 209.99955 * 18 16 14 21 21 H 1.48500 * 109.47208 * 329.99950 * 18 16 14 22 22 C 1.47431 * 108.70142 * 358.94050 * 13 12 10 23 23 C 1.55157 * 110.71610 * 157.44358 * 10 9 7 24 24 H 1.09001 * 111.00741 * 35.97140 * 23 10 9 25 25 O 1.42905 * 111.00350 * 272.11375 * 23 10 9 26 26 H 1.09000 * 109.46915 * 299.99943 * 1 2 3 27 27 H 1.08999 * 109.46583 * 60.00155 * 1 2 3 28 28 H 1.08998 * 109.46977 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47327 * 239.99297 * 2 1 3 30 30 H 1.09005 * 109.47246 * 59.99707 * 3 2 1 31 31 H 1.08994 * 109.47197 * 179.97438 * 3 2 1 32 32 H 1.08993 * 109.46910 * 299.99834 * 3 2 1 33 33 H 1.09000 * 109.47541 * 59.99864 * 5 4 2 34 34 H 1.08999 * 109.47489 * 299.99738 * 5 4 2 35 35 H 1.09000 * 109.47193 * 60.00216 * 6 5 4 36 36 H 1.08995 * 109.47172 * 299.99549 * 6 5 4 37 37 H 0.96996 * 120.00112 * 0.02562 * 9 7 6 38 38 H 1.09001 * 109.88480 * 338.69050 * 12 10 9 39 39 H 1.09003 * 109.88132 * 99.69456 * 12 10 9 40 40 H 0.96992 * 120.00405 * 180.02562 * 17 16 14 41 41 H 1.08999 * 110.36190 * 142.96411 * 22 13 12 42 42 H 1.08999 * 110.36356 * 265.28933 * 22 13 12 43 43 H 0.96704 * 113.99865 * 180.02562 * 25 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 1.1669 5 6 3.2660 -1.3245 0.9888 6 6 3.6759 -2.0080 2.2948 7 6 5.0041 -2.6949 2.1068 8 8 5.5674 -2.6425 1.0340 9 7 5.5663 -3.3667 3.1311 10 6 6.8577 -4.0340 2.9485 11 1 7.4903 -3.4664 2.2659 12 6 6.6595 -5.4765 2.4372 13 7 7.6479 -6.3222 3.1224 14 6 7.7882 -7.6749 2.9628 15 1 7.1388 -8.2089 2.2849 16 6 8.7659 -8.3596 3.6714 17 7 9.5578 -7.7088 4.4971 18 14 8.9579 -10.2049 3.4531 19 1 9.9172 -10.4760 2.3524 20 1 9.4687 -10.8019 4.7132 21 1 7.6404 -10.8037 3.1202 22 6 8.4623 -5.4726 4.0104 23 6 7.5675 -4.2388 4.3129 24 1 6.8461 -4.4622 5.0989 25 8 8.3583 -3.0988 4.6551 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.6767 1.9564 0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6768 1.9562 -0.8900 33 1 4.0200 -0.5874 0.7126 34 1 3.1810 -2.0707 0.1989 35 1 2.9221 -2.7451 2.5713 36 1 3.7612 -1.2615 3.0844 37 1 5.1159 -3.4083 3.9891 38 1 5.6518 -5.8184 2.6735 39 1 6.8200 -5.5133 1.3597 40 1 10.2412 -8.1871 4.9919 41 1 8.6987 -6.0044 4.9320 42 1 9.3769 -5.1628 3.5048 43 1 8.8214 -3.1807 5.5000 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191209633.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:37:41 Heat of formation + Delta-G solvation = -139.737608 kcal Electronic energy + Delta-G solvation = -22854.699421 eV Core-core repulsion = 19320.516683 eV Total energy + Delta-G solvation = -3534.182739 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.14243 -39.62507 -39.06528 -36.69939 -35.59667 -34.32251 -33.63339 -31.86408 -30.12335 -28.71455 -28.09700 -26.50579 -24.66912 -22.50446 -22.26894 -21.81444 -21.29169 -19.11238 -18.62844 -18.19733 -17.35126 -17.30592 -16.93656 -16.63722 -15.94925 -15.84570 -15.53506 -15.27055 -14.84123 -14.64991 -14.45795 -14.02050 -13.88646 -13.60866 -13.35544 -13.22131 -13.15335 -13.07389 -12.85704 -12.73763 -12.69447 -12.37528 -12.10725 -12.06426 -11.93967 -11.60091 -11.44511 -11.22385 -10.84686 -10.76931 -10.55539 -10.19118 -8.98865 -7.83270 -5.29793 1.46882 1.48833 1.56831 1.57852 1.90242 2.45627 2.82226 3.07119 3.28443 3.61181 3.69059 3.83677 3.96457 4.01436 4.06267 4.16127 4.17141 4.23292 4.31452 4.42016 4.50383 4.59115 4.70360 4.77481 4.82570 4.83800 4.91919 4.94342 4.95834 4.99848 5.29293 5.34792 5.36442 5.42693 5.44048 5.66776 6.19952 6.24665 6.50479 6.86201 7.03544 7.20098 7.67564 8.29772 9.18504 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.029897 B = 0.002889 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.311433 B = 9690.207269 C =10342.197009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.070 3.930 3 C -0.173 4.173 4 O -0.394 6.394 5 C 0.081 3.919 6 C -0.125 4.125 7 C 0.516 3.484 8 O -0.587 6.587 9 N -0.701 5.701 10 C 0.154 3.846 11 H 0.075 0.925 12 C 0.131 3.869 13 N -0.620 5.620 14 C -0.244 4.244 15 H 0.081 0.919 16 C -0.062 4.062 17 N -0.947 5.947 18 Si 0.984 3.016 19 H -0.289 1.289 20 H -0.288 1.288 21 H -0.268 1.268 22 C 0.133 3.867 23 C 0.092 3.908 24 H 0.090 0.910 25 O -0.568 6.568 26 H 0.063 0.937 27 H 0.087 0.913 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.047 0.953 32 H 0.081 0.919 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.124 0.876 36 H 0.125 0.875 37 H 0.418 0.582 38 H 0.043 0.957 39 H 0.013 0.987 40 H 0.251 0.749 41 H 0.091 0.909 42 H -0.010 1.010 43 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.263 15.564 -1.482 22.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.013 3.987 3 C -0.231 4.231 4 O -0.314 6.314 5 C 0.004 3.996 6 C -0.165 4.165 7 C 0.304 3.696 8 O -0.467 6.467 9 N -0.353 5.353 10 C 0.048 3.952 11 H 0.093 0.907 12 C 0.005 3.995 13 N -0.347 5.347 14 C -0.373 4.373 15 H 0.099 0.901 16 C -0.255 4.255 17 N -0.596 5.596 18 Si 0.812 3.188 19 H -0.217 1.217 20 H -0.214 1.214 21 H -0.193 1.193 22 C 0.007 3.993 23 C 0.031 3.969 24 H 0.108 0.892 25 O -0.375 6.375 26 H 0.082 0.918 27 H 0.105 0.895 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.100 0.900 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.256 0.744 38 H 0.061 0.939 39 H 0.031 0.969 40 H 0.061 0.939 41 H 0.109 0.891 42 H 0.008 0.992 43 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -16.094 15.669 -2.552 22.606 hybrid contribution 0.954 -1.316 0.306 1.654 sum -15.140 14.353 -2.245 20.983 Atomic orbital electron populations 1.21865 0.92232 1.02825 1.03368 1.22321 0.96017 0.92795 0.87575 1.22286 1.01135 0.96280 1.03359 1.87819 1.36334 1.70321 1.36976 1.22040 0.85428 0.95546 0.96613 1.21414 0.93011 1.01970 1.00084 1.21071 0.87519 0.77798 0.83222 1.90707 1.65565 1.62763 1.27688 1.45758 1.21182 1.52857 1.15496 1.21536 0.84754 0.92031 0.96872 0.90714 1.21679 0.93461 0.89495 0.94910 1.44547 1.37615 1.03605 1.48952 1.19449 1.14365 0.82492 1.20983 0.90105 1.25647 0.97739 1.02857 0.99227 1.69955 1.23024 1.35233 1.31399 0.85003 0.77986 0.79157 0.76694 1.21659 1.21435 1.19321 1.22462 0.90977 0.89287 0.96582 1.23337 0.92923 0.85705 0.94950 0.89205 1.86386 1.66444 1.39337 1.45381 0.91781 0.89471 0.92288 0.92202 0.91737 0.93338 0.90000 0.93472 0.93497 0.85761 0.85668 0.74385 0.93929 0.96878 0.93944 0.89095 0.99221 0.75216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.56 71.98 0.69 -1.15 16 2 C 0.07 1.16 3.34 30.60 0.10 1.26 16 3 C -0.17 -2.48 9.53 71.98 0.69 -1.80 16 4 O -0.39 -8.14 9.99 -148.98 -1.49 -9.62 16 5 C 0.08 1.78 5.04 71.98 0.36 2.15 16 6 C -0.13 -2.43 6.07 29.85 0.18 -2.25 16 7 C 0.52 14.73 7.83 87.66 0.69 15.42 16 8 O -0.59 -22.31 15.67 -3.03 -0.05 -22.35 16 9 N -0.70 -19.49 5.12 -436.90 -2.24 -21.72 16 10 C 0.15 5.75 3.00 46.18 0.14 5.89 16 11 H 0.07 3.21 7.62 -2.39 -0.02 3.19 16 12 C 0.13 5.74 6.99 86.73 0.61 6.35 16 13 N -0.62 -32.16 3.40 -691.01 -2.35 -34.51 16 14 C -0.24 -13.70 10.27 84.03 0.86 -12.83 16 15 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 16 C -0.06 -3.45 5.49 84.86 0.47 -2.99 16 17 N -0.95 -54.81 10.09 21.65 0.22 -54.59 16 18 Si 0.98 44.96 29.55 68.60 2.03 46.99 16 19 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 20 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 21 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 22 C 0.13 6.42 5.65 87.02 0.49 6.91 16 23 C 0.09 3.29 4.07 32.16 0.13 3.42 16 24 H 0.09 2.80 8.01 -2.39 -0.02 2.78 16 25 O -0.57 -18.36 13.48 -148.98 -2.01 -20.37 16 26 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.06 0.99 7.79 -2.39 -0.02 0.97 16 30 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.05 0.78 7.87 -2.39 -0.02 0.77 16 32 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.05 1.12 7.83 -2.39 -0.02 1.10 16 34 H 0.05 1.13 8.04 -2.39 -0.02 1.11 16 35 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.42 8.54 8.54 -92.71 -0.79 7.75 16 38 H 0.04 1.76 8.03 -2.39 -0.02 1.74 16 39 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 41 H 0.09 4.80 5.87 -2.39 -0.01 4.79 16 42 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 43 H 0.40 9.39 9.12 -74.05 -0.68 8.71 16 Total: -1.00 -72.29 353.58 -0.94 -73.22 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: -0.46 Total: 22.57 kcal Atomic # 6 Polarization: 14.98 SS G_CDS: 5.40 Total: 20.38 kcal Atomic # 7 Polarization: -106.46 SS G_CDS: -4.36 Total: -110.82 kcal Atomic # 8 Polarization: -48.80 SS G_CDS: -3.54 Total: -52.35 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -72.29 -0.94 -73.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191209633.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.513 kcal (2) G-P(sol) polarization free energy of solvation -72.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds