Wall clock time and date at job start Tue Mar 31 2020 03:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34778 * 120.00333 * 2 1 4 4 O 1.21588 * 119.99703 * 359.97438 * 3 2 1 5 5 N 1.34773 * 119.99820 * 179.97438 * 3 2 1 6 6 C 1.46506 * 119.99778 * 179.97438 * 5 3 2 7 7 C 1.50695 * 109.46874 * 180.02562 * 6 5 3 8 8 O 1.21274 * 120.00413 * 0.27298 * 7 6 5 9 9 N 1.34784 * 119.99635 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99971 * 179.97438 * 9 7 6 11 11 H 1.08999 * 110.88547 * 34.29748 * 10 9 7 12 12 C 1.54914 * 111.00565 * 270.42090 * 10 9 7 13 13 N 1.47470 * 104.81076 * 204.95082 * 12 10 9 14 14 C 1.36933 * 125.62637 * 204.04898 * 13 12 10 15 15 H 1.08000 * 120.00327 * 359.97438 * 14 13 12 16 16 C 1.38813 * 119.99802 * 179.97438 * 14 13 12 17 17 N 1.31614 * 120.00201 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99974 * 179.97438 * 16 14 13 19 19 H 1.48492 * 109.47140 * 60.00439 * 18 16 14 20 20 H 1.48498 * 109.47405 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47270 * 300.00463 * 18 16 14 22 22 C 1.47024 * 108.72293 * 24.06454 * 13 12 10 23 23 C 1.54329 * 107.27045 * 358.97817 * 22 13 12 24 24 H 1.08999 * 110.71923 * 96.16687 * 23 22 13 25 25 O 1.42900 * 110.71686 * 219.44356 * 23 22 13 26 26 H 1.08990 * 109.47660 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47140 * 300.00281 * 1 2 3 28 28 H 1.09005 * 109.46741 * 59.99912 * 1 2 3 29 29 H 0.97003 * 119.99484 * 180.02562 * 2 1 3 30 30 H 0.97000 * 120.00556 * 0.02562 * 5 3 2 31 31 H 1.09005 * 109.46943 * 60.00092 * 6 5 3 32 32 H 1.09002 * 109.47064 * 300.00355 * 6 5 3 33 33 H 0.96999 * 120.00044 * 0.02562 * 9 7 6 34 34 H 1.08996 * 110.36238 * 323.75478 * 12 10 9 35 35 H 1.08996 * 110.36852 * 86.07427 * 12 10 9 36 36 H 0.96996 * 120.00306 * 179.97438 * 17 16 14 37 37 H 1.08997 * 109.88222 * 239.56157 * 22 13 12 38 38 H 1.08998 * 110.00899 * 118.46600 * 22 13 12 39 39 H 0.96707 * 113.99484 * 293.51872 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2202 -0.0005 5 7 3.4867 1.1671 0.0005 6 6 4.2193 2.4358 0.0000 7 6 5.7008 2.1603 0.0001 8 8 6.1050 1.0169 -0.0044 9 7 6.5767 3.1847 0.0001 10 6 8.0170 2.9170 0.0008 11 1 8.2456 2.0187 -0.5726 12 6 8.5604 2.8055 1.4472 13 7 9.9898 3.1523 1.3407 14 6 10.9718 2.7645 2.2127 15 1 10.7244 2.1515 3.0668 16 6 12.2853 3.1593 1.9989 17 7 12.5868 3.9068 0.9584 18 14 13.6248 2.6309 3.1889 19 1 13.6975 1.1483 3.2258 20 1 14.9298 3.1798 2.7407 21 1 13.3120 3.1451 4.5465 22 6 10.1859 3.9834 0.1439 23 6 8.8098 4.1372 -0.5376 24 1 8.3327 5.0700 -0.2371 25 8 8.9392 4.0687 -1.9591 26 1 -0.3634 -1.0275 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.9499 -0.8401 -0.0004 30 1 3.9717 0.3270 0.0005 31 1 3.9556 3.0080 0.8895 32 1 3.9563 3.0068 -0.8905 33 1 6.2534 4.0993 0.0005 34 1 8.0470 3.5107 2.1007 35 1 8.4430 1.7877 1.8192 36 1 13.5046 4.1829 0.8092 37 1 10.8838 3.4951 -0.5362 38 1 10.5700 4.9628 0.4288 39 1 9.4271 4.8088 -2.3457 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193519767.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:13 Heat of formation + Delta-G solvation = -111.789838 kcal Electronic energy + Delta-G solvation = -22601.767622 eV Core-core repulsion = 18965.256446 eV Total energy + Delta-G solvation = -3636.511176 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 286.147 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.44500 -40.66405 -39.40416 -36.67196 -35.78170 -35.60646 -35.38406 -33.65977 -30.65084 -29.52272 -28.46236 -26.80033 -25.95142 -22.57289 -22.11097 -21.87245 -21.59473 -19.96977 -19.09588 -18.34175 -17.92223 -17.47731 -17.15030 -17.01654 -16.44103 -16.09708 -15.77158 -15.66839 -15.28912 -14.86614 -14.52466 -14.43299 -14.27164 -14.12152 -13.74810 -13.50202 -13.15716 -13.08918 -13.00029 -12.76976 -12.70174 -12.14077 -11.88697 -11.55767 -11.48868 -11.24779 -10.87072 -10.76483 -10.47903 -10.22750 -9.83657 -8.97283 -7.89102 -5.26247 1.44928 1.46760 1.48423 1.49684 1.55367 2.09758 2.16690 2.47857 3.12587 3.31463 3.34555 3.54214 3.56189 3.89241 4.06533 4.19903 4.36359 4.36865 4.45699 4.50016 4.56264 4.70153 4.82709 4.96811 4.98959 5.27941 5.36137 5.40083 5.44676 5.49575 5.66789 5.92622 6.13399 6.42870 6.87123 7.00334 7.04330 7.11163 7.51285 7.69280 8.31169 9.20383 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.031075 B = 0.003034 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.818697 B = 9226.893826 C = 9855.824912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.740 5.740 3 C 0.701 3.299 4 O -0.632 6.632 5 N -0.732 5.732 6 C 0.129 3.871 7 C 0.513 3.487 8 O -0.574 6.574 9 N -0.694 5.694 10 C 0.154 3.846 11 H 0.075 0.925 12 C 0.130 3.870 13 N -0.623 5.623 14 C -0.248 4.248 15 H 0.082 0.918 16 C -0.062 4.062 17 N -0.949 5.949 18 Si 0.980 3.020 19 H -0.280 1.280 20 H -0.292 1.292 21 H -0.275 1.275 22 C 0.160 3.840 23 C 0.091 3.909 24 H 0.097 0.903 25 O -0.569 6.569 26 H 0.111 0.889 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.413 0.587 30 H 0.412 0.588 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.421 0.579 34 H 0.044 0.956 35 H 0.036 0.964 36 H 0.249 0.751 37 H 0.020 0.980 38 H 0.026 0.974 39 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.514 -2.887 -3.649 21.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.396 5.396 3 C 0.400 3.600 4 O -0.513 6.513 5 N -0.391 5.391 6 C 0.001 3.999 7 C 0.300 3.700 8 O -0.453 6.453 9 N -0.347 5.347 10 C 0.048 3.952 11 H 0.093 0.907 12 C 0.004 3.996 13 N -0.350 5.350 14 C -0.377 4.377 15 H 0.100 0.900 16 C -0.255 4.255 17 N -0.597 5.597 18 Si 0.808 3.192 19 H -0.206 1.206 20 H -0.218 1.218 21 H -0.200 1.200 22 C 0.034 3.966 23 C 0.030 3.970 24 H 0.115 0.885 25 O -0.377 6.377 26 H 0.130 0.870 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.249 0.751 30 H 0.250 0.750 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.259 0.741 34 H 0.062 0.938 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.038 0.962 38 H 0.044 0.956 39 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -20.923 -3.257 -3.557 21.471 hybrid contribution 1.883 -0.041 0.462 1.940 sum -19.039 -3.298 -3.094 19.569 Atomic orbital electron populations 1.21564 0.76914 1.04134 1.01429 1.44885 1.08511 1.06814 1.79358 1.16026 0.81428 0.84785 0.77729 1.90903 1.68649 1.31820 1.59975 1.44726 1.04504 1.10023 1.79848 1.20883 0.85746 0.87016 1.06269 1.20895 0.89231 0.84902 0.75001 1.90701 1.80544 1.22782 1.51268 1.45546 1.04725 1.10324 1.74068 1.21751 0.79473 0.98098 0.95926 0.90691 1.21958 0.84703 0.98373 0.94590 1.44518 1.02944 1.59816 1.27768 1.19404 0.87548 1.26855 1.03888 0.90049 1.25651 0.99339 1.00446 1.00078 1.70113 1.18177 1.41136 1.30265 0.85131 0.77956 0.77786 0.78323 1.20592 1.21786 1.20043 1.21635 0.92854 0.94323 0.87764 1.23156 0.95209 0.97380 0.81228 0.88521 1.86429 1.79122 1.52947 1.19160 0.87021 0.93248 0.93197 0.75086 0.75042 0.86871 0.86896 0.74127 0.93848 0.94585 0.94135 0.96195 0.95606 0.75318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.19 10.70 127.77 1.37 2.56 16 2 N -0.74 -10.91 5.72 -500.20 -2.86 -13.77 16 3 C 0.70 15.61 8.57 179.06 1.53 17.14 16 4 O -0.63 -18.73 16.34 -3.99 -0.07 -18.80 16 5 N -0.73 -14.96 5.53 -482.28 -2.67 -17.62 16 6 C 0.13 2.51 6.15 85.63 0.53 3.04 16 7 C 0.51 13.17 7.90 87.65 0.69 13.86 16 8 O -0.57 -19.32 15.36 -3.01 -0.05 -19.37 16 9 N -0.69 -17.28 5.21 -435.97 -2.27 -19.55 16 10 C 0.15 5.38 3.09 46.38 0.14 5.52 16 11 H 0.07 3.13 7.63 -2.39 -0.02 3.11 16 12 C 0.13 5.34 6.93 86.85 0.60 5.94 16 13 N -0.62 -31.72 3.40 -691.87 -2.35 -34.07 16 14 C -0.25 -13.92 10.28 84.03 0.86 -13.06 16 15 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 16 C -0.06 -3.49 5.49 84.86 0.47 -3.02 16 17 N -0.95 -55.79 10.31 21.65 0.22 -55.57 16 18 Si 0.98 45.43 29.55 68.60 2.03 47.45 16 19 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 20 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 21 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 22 C 0.16 7.54 5.15 86.73 0.45 7.99 16 23 C 0.09 3.07 3.97 31.78 0.13 3.20 16 24 H 0.10 2.62 8.00 -2.39 -0.02 2.60 16 25 O -0.57 -17.97 13.39 -148.98 -1.99 -19.97 16 26 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 29 H 0.41 3.80 8.84 -92.71 -0.82 2.98 16 30 H 0.41 8.07 7.45 -92.71 -0.69 7.38 16 31 H 0.11 1.94 8.14 -2.38 -0.02 1.92 16 32 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.42 7.30 8.54 -92.71 -0.79 6.51 16 34 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 37 H 0.02 1.09 7.30 -2.39 -0.02 1.07 16 38 H 0.03 1.32 7.50 -2.39 -0.02 1.30 16 39 H 0.40 9.19 9.12 -74.05 -0.68 8.52 16 Total: -1.00 -79.19 331.87 -5.10 -84.29 By element: Atomic # 1 Polarization: 25.67 SS G_CDS: -1.86 Total: 23.81 kcal Atomic # 6 Polarization: 36.41 SS G_CDS: 6.77 Total: 43.18 kcal Atomic # 7 Polarization: -130.67 SS G_CDS: -9.93 Total: -140.59 kcal Atomic # 8 Polarization: -56.03 SS G_CDS: -2.11 Total: -58.13 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.45 kcal Total: -79.19 -5.10 -84.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193519767.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.501 kcal (2) G-P(sol) polarization free energy of solvation -79.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds