Wall clock time and date at job start Tue Mar 31 2020 03:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47128 * 2 1 4 4 C 1.53005 * 109.47228 * 175.30426 * 3 2 1 5 5 H 1.08998 * 109.47430 * 305.02859 * 4 3 2 6 6 O 1.42901 * 109.46732 * 65.02504 * 4 3 2 7 7 C 1.42895 * 114.00324 * 258.63931 * 6 4 3 8 8 C 1.50696 * 109.47097 * 185.02498 * 4 3 2 9 9 O 1.21286 * 120.00184 * 244.99877 * 8 4 3 10 10 N 1.34783 * 119.99992 * 65.00299 * 8 4 3 11 11 C 1.46503 * 119.99884 * 179.72426 * 10 8 4 12 12 H 1.08995 * 110.88652 * 31.39047 * 11 10 8 13 13 C 1.54912 * 111.00204 * 267.46828 * 11 10 8 14 14 N 1.47422 * 104.83282 * 204.91951 * 13 11 10 15 15 C 1.36943 * 125.64746 * 204.11315 * 14 13 11 16 16 H 1.07990 * 119.99979 * 359.97438 * 15 14 13 17 17 C 1.38815 * 119.99556 * 179.97438 * 15 14 13 18 18 N 1.31618 * 120.00113 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99622 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.46937 * 60.00035 * 19 17 15 21 21 H 1.48499 * 109.47029 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47190 * 300.00371 * 19 17 15 23 23 C 1.47021 * 108.70301 * 24.12709 * 14 13 11 24 24 C 1.54326 * 107.26912 * 358.94466 * 23 14 13 25 25 H 1.08996 * 110.87175 * 96.24106 * 24 23 14 26 26 O 1.42903 * 110.71588 * 219.44124 * 24 23 14 27 27 H 1.09000 * 109.46931 * 60.00330 * 1 2 3 28 28 H 1.09006 * 109.46907 * 179.97438 * 1 2 3 29 29 H 1.08989 * 109.47258 * 300.00008 * 1 2 3 30 30 H 1.09003 * 109.47309 * 240.00149 * 2 1 3 31 31 H 1.08993 * 109.47358 * 120.00205 * 2 1 3 32 32 H 1.09004 * 109.47264 * 55.30942 * 3 2 1 33 33 H 1.09000 * 109.47748 * 295.30379 * 3 2 1 34 34 H 1.08996 * 109.47143 * 305.53370 * 7 6 4 35 35 H 1.09001 * 109.46928 * 65.52843 * 7 6 4 36 36 H 1.08995 * 109.47504 * 185.52803 * 7 6 4 37 37 H 0.97001 * 119.99913 * 0.02562 * 10 8 4 38 38 H 1.09004 * 110.37009 * 323.75933 * 13 11 10 39 39 H 1.09008 * 110.36452 * 86.07864 * 13 11 10 40 40 H 0.96998 * 119.99854 * 179.97438 * 18 17 15 41 41 H 1.08994 * 109.88381 * 239.52303 * 23 14 13 42 42 H 1.08998 * 110.00772 * 118.43132 * 23 14 13 43 43 H 0.96705 * 114.00171 * 293.52174 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5654 1.4441 0.1181 5 1 3.8622 0.8779 1.0009 6 8 4.1339 0.8426 -1.0469 7 6 4.5580 -0.5084 -0.8554 8 6 4.0581 2.8628 0.2423 9 8 4.7478 3.3440 -0.6317 10 7 3.7324 3.5970 1.3246 11 6 4.2164 4.9743 1.4482 12 1 4.3189 5.4396 0.4679 13 6 5.5526 5.0251 2.2303 14 7 5.6040 6.3832 2.8017 15 6 6.7415 7.0540 3.1641 16 1 7.7070 6.5868 3.0389 17 6 6.6534 8.3347 3.6925 18 7 5.4766 8.9043 3.8446 19 14 8.2050 9.2495 4.1876 20 1 9.0844 9.4103 3.0018 21 1 7.8422 10.5872 4.7204 22 1 8.9219 8.4779 5.2345 23 6 4.2317 6.8979 2.9183 24 6 3.2861 5.8103 2.3662 25 1 2.8875 5.1961 3.1736 26 8 2.2257 6.3987 1.6103 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6096 1.9800 0.8450 33 1 1.7470 1.9315 -0.9290 34 1 5.2419 -0.5579 -0.0081 35 1 3.6898 -1.1373 -0.6586 36 1 5.0658 -0.8606 -1.7532 37 1 3.1812 3.2121 2.0238 38 1 5.5558 4.2789 3.0249 39 1 6.3935 4.8654 1.5554 40 1 5.4151 9.7990 4.2142 41 1 4.1276 7.8115 2.3332 42 1 3.9961 7.0983 3.9634 43 1 1.6155 6.9321 2.1378 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195238895.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:41 Heat of formation + Delta-G solvation = -109.499711 kcal Electronic energy + Delta-G solvation = -23586.641192 eV Core-core repulsion = 20053.769667 eV Total energy + Delta-G solvation = -3532.871525 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.05553 -38.40612 -37.30502 -35.06942 -34.87471 -33.93428 -31.78975 -30.25459 -28.28657 -27.01623 -26.78138 -24.86487 -23.88647 -21.54230 -20.71320 -20.45250 -20.09143 -17.51918 -17.27923 -16.79913 -16.61614 -15.97251 -15.44590 -15.07927 -14.78272 -14.40005 -14.27733 -13.99165 -13.54050 -13.51844 -13.09953 -12.71358 -12.67728 -12.44147 -12.34999 -12.05567 -11.77291 -11.52293 -11.45483 -11.31895 -11.24604 -10.89931 -10.86503 -10.79413 -10.20047 -10.11825 -9.91135 -9.83872 -9.50253 -9.18224 -8.81776 -8.61997 -6.91673 -5.76204 -3.10835 2.76550 2.97201 3.40218 3.44304 3.45581 3.87722 4.43241 4.50176 4.58770 4.62708 4.70945 4.85956 4.93760 5.11667 5.17222 5.21185 5.28900 5.38833 5.43747 5.45548 5.55936 5.57742 5.61068 5.66915 5.81564 5.83608 5.92194 6.01885 6.08008 6.13248 6.51577 6.61267 6.81514 6.96046 7.32177 7.46532 7.68405 7.74446 8.11735 8.17509 8.43183 9.15103 9.75131 10.38160 11.35481 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.027001 B = 0.003632 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.752914 B = 7707.326713 C = 8445.448319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.133 4.133 4 C 0.074 3.926 5 H 0.087 0.913 6 O -0.356 6.356 7 C 0.025 3.975 8 C 0.508 3.492 9 O -0.518 6.518 10 N -0.714 5.714 11 C 0.139 3.861 12 H 0.105 0.895 13 C 0.130 3.870 14 N -0.600 5.600 15 C -0.230 4.230 16 H 0.080 0.920 17 C -0.007 4.007 18 N -0.924 5.924 19 Si 0.916 3.084 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.154 3.846 24 C 0.069 3.931 25 H 0.057 0.943 26 O -0.563 6.563 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.043 0.957 35 H 0.045 0.955 36 H 0.088 0.912 37 H 0.396 0.604 38 H 0.023 0.977 39 H 0.050 0.950 40 H 0.254 0.746 41 H 0.061 0.939 42 H 0.049 0.951 43 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.346 -18.252 -3.406 21.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.171 4.171 4 C 0.013 3.987 5 H 0.104 0.896 6 O -0.273 6.273 7 C -0.072 4.072 8 C 0.292 3.708 9 O -0.392 6.392 10 N -0.366 5.366 11 C 0.034 3.966 12 H 0.123 0.877 13 C 0.002 3.998 14 N -0.327 5.327 15 C -0.358 4.358 16 H 0.098 0.902 17 C -0.203 4.203 18 N -0.572 5.572 19 Si 0.746 3.254 20 H -0.210 1.210 21 H -0.215 1.215 22 H -0.211 1.211 23 C 0.028 3.972 24 C 0.009 3.991 25 H 0.075 0.925 26 O -0.368 6.368 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.106 0.894 37 H 0.230 0.770 38 H 0.041 0.959 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.079 0.921 42 H 0.067 0.933 43 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -9.457 -17.893 -4.646 20.765 hybrid contribution 0.233 0.457 1.436 1.525 sum -9.224 -17.436 -3.210 19.985 Atomic orbital electron populations 1.21762 0.95419 1.01626 1.02137 1.21602 0.96325 0.96184 1.02133 1.22053 0.92822 0.98167 1.04079 1.22045 0.94031 0.92426 0.90235 0.89563 1.88045 1.80325 1.26547 1.32394 1.22997 0.98687 0.83073 1.02446 1.20492 0.80692 0.87506 0.82080 1.90736 1.36831 1.71949 1.39655 1.45874 1.53951 1.14438 1.22340 1.22266 0.93838 0.79594 1.00945 0.87656 1.21851 0.94482 0.88856 0.94581 1.44232 1.02633 1.12067 1.73814 1.19051 0.84934 0.96695 1.35118 0.90185 1.24815 0.97178 0.97073 1.01250 1.69911 1.21494 1.15213 1.50535 0.86139 0.82013 0.78909 0.78353 1.21018 1.21546 1.21118 1.21816 0.82523 0.93198 0.99657 1.23459 0.88029 0.95449 0.92172 0.92529 1.86478 1.41316 1.69925 1.39035 0.92537 0.92730 0.92556 0.91338 0.92047 0.90277 0.90214 0.93826 0.93619 0.89374 0.77044 0.95906 0.93186 0.93597 0.92081 0.93330 0.77721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.16 0.37 -0.66 16 2 C -0.13 -0.93 4.94 -26.73 -0.13 -1.06 16 3 C -0.13 -1.27 4.89 -26.73 -0.13 -1.40 16 4 C 0.07 0.87 2.68 -27.88 -0.07 0.80 16 5 H 0.09 0.78 7.60 -51.93 -0.39 0.39 16 6 O -0.36 -4.71 9.65 -55.09 -0.53 -5.25 16 7 C 0.02 0.22 10.47 101.05 1.06 1.28 16 8 C 0.51 8.16 7.18 -10.98 -0.08 8.08 16 9 O -0.52 -10.95 16.15 -14.31 -0.23 -11.18 16 10 N -0.71 -10.63 5.10 -51.73 -0.26 -10.89 16 11 C 0.14 2.65 3.14 -65.78 -0.21 2.44 16 12 H 0.11 2.36 7.54 -51.93 -0.39 1.96 16 13 C 0.13 2.80 6.93 -2.53 -0.02 2.78 16 14 N -0.60 -15.45 3.39 -170.07 -0.58 -16.02 16 15 C -0.23 -6.47 10.28 -15.06 -0.15 -6.63 16 16 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 17 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 18 N -0.92 -26.82 10.31 55.49 0.57 -26.25 16 19 Si 0.92 22.16 29.55 -169.99 -5.02 17.14 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 23 C 0.15 3.65 5.15 -3.06 -0.02 3.63 16 24 C 0.07 1.27 3.98 -24.90 -0.10 1.17 16 25 H 0.06 0.90 8.00 -51.93 -0.42 0.48 16 26 O -0.56 -9.72 13.39 -35.23 -0.47 -10.19 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.36 8.14 -51.94 -0.42 -0.06 16 30 H 0.07 0.53 6.53 -51.93 -0.34 0.19 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.66 7.77 -51.93 -0.40 0.26 16 33 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.04 0.35 8.00 -51.93 -0.42 -0.06 16 35 H 0.05 0.31 6.03 -51.93 -0.31 0.00 16 36 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.40 4.49 8.27 -40.82 -0.34 4.16 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.05 1.13 8.14 -51.92 -0.42 0.71 16 40 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 41 H 0.06 1.64 7.29 -51.93 -0.38 1.26 16 42 H 0.05 1.23 7.51 -51.93 -0.39 0.84 16 43 H 0.38 4.89 9.12 45.56 0.42 5.31 16 LS Contribution 348.83 15.07 5.26 5.26 Total: -1.00 -34.86 348.83 -7.14 -42.00 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -6.29 Total: 5.25 kcal Atomic # 6 Polarization: 9.72 SS G_CDS: 0.42 Total: 10.14 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: -0.27 Total: -53.16 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -1.23 Total: -26.62 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.86 -7.14 -42.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195238895.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.501 kcal (2) G-P(sol) polarization free energy of solvation -34.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds