Wall clock time and date at job start Tue Mar 31 2020 03:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47128 * 2 1 4 4 C 1.53005 * 109.47228 * 175.30426 * 3 2 1 5 5 H 1.08998 * 109.47430 * 305.02859 * 4 3 2 6 6 O 1.42901 * 109.46732 * 65.02504 * 4 3 2 7 7 C 1.42895 * 114.00324 * 258.63931 * 6 4 3 8 8 C 1.50696 * 109.47097 * 185.02498 * 4 3 2 9 9 O 1.21286 * 120.00184 * 244.99877 * 8 4 3 10 10 N 1.34783 * 119.99992 * 65.00299 * 8 4 3 11 11 C 1.46503 * 119.99884 * 179.72426 * 10 8 4 12 12 H 1.08995 * 110.88652 * 31.39047 * 11 10 8 13 13 C 1.54912 * 111.00204 * 267.46828 * 11 10 8 14 14 N 1.47422 * 104.83282 * 204.91951 * 13 11 10 15 15 C 1.36943 * 125.64746 * 204.11315 * 14 13 11 16 16 H 1.07990 * 119.99979 * 359.97438 * 15 14 13 17 17 C 1.38815 * 119.99556 * 179.97438 * 15 14 13 18 18 N 1.31618 * 120.00113 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99622 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.46937 * 60.00035 * 19 17 15 21 21 H 1.48499 * 109.47029 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47190 * 300.00371 * 19 17 15 23 23 C 1.47021 * 108.70301 * 24.12709 * 14 13 11 24 24 C 1.54326 * 107.26912 * 358.94466 * 23 14 13 25 25 H 1.08996 * 110.87175 * 96.24106 * 24 23 14 26 26 O 1.42903 * 110.71588 * 219.44124 * 24 23 14 27 27 H 1.09000 * 109.46931 * 60.00330 * 1 2 3 28 28 H 1.09006 * 109.46907 * 179.97438 * 1 2 3 29 29 H 1.08989 * 109.47258 * 300.00008 * 1 2 3 30 30 H 1.09003 * 109.47309 * 240.00149 * 2 1 3 31 31 H 1.08993 * 109.47358 * 120.00205 * 2 1 3 32 32 H 1.09004 * 109.47264 * 55.30942 * 3 2 1 33 33 H 1.09000 * 109.47748 * 295.30379 * 3 2 1 34 34 H 1.08996 * 109.47143 * 305.53370 * 7 6 4 35 35 H 1.09001 * 109.46928 * 65.52843 * 7 6 4 36 36 H 1.08995 * 109.47504 * 185.52803 * 7 6 4 37 37 H 0.97001 * 119.99913 * 0.02562 * 10 8 4 38 38 H 1.09004 * 110.37009 * 323.75933 * 13 11 10 39 39 H 1.09008 * 110.36452 * 86.07864 * 13 11 10 40 40 H 0.96998 * 119.99854 * 179.97438 * 18 17 15 41 41 H 1.08994 * 109.88381 * 239.52303 * 23 14 13 42 42 H 1.08998 * 110.00772 * 118.43132 * 23 14 13 43 43 H 0.96705 * 114.00171 * 293.52174 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5654 1.4441 0.1181 5 1 3.8622 0.8779 1.0009 6 8 4.1339 0.8426 -1.0469 7 6 4.5580 -0.5084 -0.8554 8 6 4.0581 2.8628 0.2423 9 8 4.7478 3.3440 -0.6317 10 7 3.7324 3.5970 1.3246 11 6 4.2164 4.9743 1.4482 12 1 4.3189 5.4396 0.4679 13 6 5.5526 5.0251 2.2303 14 7 5.6040 6.3832 2.8017 15 6 6.7415 7.0540 3.1641 16 1 7.7070 6.5868 3.0389 17 6 6.6534 8.3347 3.6925 18 7 5.4766 8.9043 3.8446 19 14 8.2050 9.2495 4.1876 20 1 9.0844 9.4103 3.0018 21 1 7.8422 10.5872 4.7204 22 1 8.9219 8.4779 5.2345 23 6 4.2317 6.8979 2.9183 24 6 3.2861 5.8103 2.3662 25 1 2.8875 5.1961 3.1736 26 8 2.2257 6.3987 1.6103 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6096 1.9800 0.8450 33 1 1.7470 1.9315 -0.9290 34 1 5.2419 -0.5579 -0.0081 35 1 3.6898 -1.1373 -0.6586 36 1 5.0658 -0.8606 -1.7532 37 1 3.1812 3.2121 2.0238 38 1 5.5558 4.2789 3.0249 39 1 6.3935 4.8654 1.5554 40 1 5.4151 9.7990 4.2142 41 1 4.1276 7.8115 2.3332 42 1 3.9961 7.0983 3.9634 43 1 1.6155 6.9321 2.1378 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195238895.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:39 Heat of formation + Delta-G solvation = -137.239580 kcal Electronic energy + Delta-G solvation = -23587.844083 eV Core-core repulsion = 20053.769667 eV Total energy + Delta-G solvation = -3534.074416 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.31082 -39.77602 -38.54948 -36.68366 -35.81301 -35.25818 -33.65351 -31.29547 -29.96985 -28.68074 -27.46472 -26.50545 -25.10131 -22.47291 -22.12566 -21.99794 -21.49967 -19.16518 -18.57731 -18.11000 -17.91242 -17.29385 -16.72022 -16.32485 -16.00000 -15.72703 -15.67136 -15.37780 -14.92403 -14.47667 -14.30428 -14.20943 -14.10951 -13.76833 -13.38442 -13.16992 -13.13710 -13.01728 -12.78733 -12.70766 -12.42778 -12.24724 -12.13470 -11.95007 -11.89377 -11.55520 -11.47916 -11.16238 -10.94268 -10.77365 -10.37305 -10.18328 -8.98153 -7.89666 -5.27114 1.44999 1.48785 1.52399 1.54803 1.81002 2.46604 2.97788 3.12142 3.30982 3.53492 3.55991 3.80434 3.84667 3.97451 4.04943 4.17813 4.21348 4.28457 4.43402 4.50193 4.54507 4.56193 4.67230 4.78127 4.79873 4.85100 4.95671 4.98581 5.04898 5.27208 5.34990 5.35326 5.41162 5.44052 5.47895 5.65567 6.08247 6.12751 6.54240 6.87428 7.03712 7.21702 7.68095 8.30424 9.19734 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.027001 B = 0.003632 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.752914 B = 7707.326713 C = 8445.448319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.128 4.128 4 C 0.082 3.918 5 H 0.122 0.878 6 O -0.391 6.391 7 C 0.018 3.982 8 C 0.503 3.497 9 O -0.577 6.577 10 N -0.695 5.695 11 C 0.152 3.848 12 H 0.067 0.933 13 C 0.131 3.869 14 N -0.622 5.622 15 C -0.252 4.252 16 H 0.081 0.919 17 C -0.060 4.060 18 N -0.947 5.947 19 Si 0.981 3.019 20 H -0.282 1.282 21 H -0.290 1.290 22 H -0.273 1.273 23 C 0.161 3.839 24 C 0.093 3.907 25 H 0.100 0.900 26 O -0.570 6.570 27 H 0.046 0.954 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.056 0.944 34 H 0.052 0.948 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.419 0.581 38 H 0.048 0.952 39 H 0.030 0.970 40 H 0.250 0.750 41 H 0.019 0.981 42 H 0.029 0.971 43 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.336 -20.581 -2.197 23.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.166 4.166 4 C 0.021 3.979 5 H 0.140 0.860 6 O -0.310 6.310 7 C -0.078 4.078 8 C 0.290 3.710 9 O -0.455 6.455 10 N -0.349 5.349 11 C 0.045 3.955 12 H 0.085 0.915 13 C 0.004 3.996 14 N -0.350 5.350 15 C -0.380 4.380 16 H 0.098 0.902 17 C -0.253 4.253 18 N -0.595 5.595 19 Si 0.809 3.191 20 H -0.208 1.208 21 H -0.216 1.216 22 H -0.199 1.199 23 C 0.035 3.965 24 C 0.033 3.967 25 H 0.117 0.883 26 O -0.377 6.377 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.113 0.887 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.111 0.889 37 H 0.257 0.743 38 H 0.065 0.935 39 H 0.048 0.952 40 H 0.059 0.941 41 H 0.037 0.963 42 H 0.047 0.953 43 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -10.493 -20.273 -3.410 23.081 hybrid contribution 0.543 1.157 1.009 1.628 sum -9.950 -19.116 -2.401 21.684 Atomic orbital electron populations 1.21765 0.94937 1.02301 1.01974 1.21577 0.96658 0.94560 1.02937 1.22053 0.91122 0.99867 1.03592 1.22120 0.95033 0.89379 0.91338 0.86032 1.88009 1.80741 1.28737 1.33475 1.23223 0.99979 0.81421 1.03183 1.21485 0.79365 0.89191 0.81003 1.90713 1.39572 1.73500 1.41733 1.45607 1.53668 1.12598 1.22988 1.21731 0.93215 0.81923 0.98643 0.91513 1.21941 0.95266 0.87546 0.94833 1.44505 1.02865 1.13619 1.74008 1.19415 0.86029 0.97422 1.35162 0.90150 1.25655 1.00233 0.97873 1.01586 1.70118 1.23233 1.15112 1.51078 0.85122 0.78497 0.77426 0.78080 1.20774 1.21612 1.19885 1.21634 0.83155 0.93745 0.97981 1.23158 0.87228 0.93723 0.92614 0.88279 1.86445 1.41119 1.70377 1.39794 0.93465 0.91660 0.92014 0.91744 0.89999 0.88701 0.92512 0.92962 0.91188 0.88943 0.74334 0.93476 0.95179 0.94096 0.96292 0.95335 0.75341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.91 71.98 0.71 -0.91 16 2 C -0.12 -1.38 4.94 30.59 0.15 -1.23 16 3 C -0.13 -2.12 4.89 30.60 0.15 -1.97 16 4 C 0.08 1.74 2.68 29.85 0.08 1.82 16 5 H 0.12 1.70 7.60 -2.39 -0.02 1.68 16 6 O -0.39 -9.86 9.65 -129.99 -1.25 -11.12 16 7 C 0.02 0.27 10.47 113.37 1.19 1.46 16 8 C 0.50 15.71 7.18 87.65 0.63 16.34 16 9 O -0.58 -25.03 16.15 15.94 0.26 -24.77 16 10 N -0.69 -19.39 5.10 -435.96 -2.22 -21.61 16 11 C 0.15 5.74 3.14 46.38 0.15 5.89 16 12 H 0.07 3.09 7.54 -2.39 -0.02 3.07 16 13 C 0.13 5.65 6.93 86.86 0.60 6.25 16 14 N -0.62 -32.64 3.39 -691.98 -2.35 -34.99 16 15 C -0.25 -14.43 10.28 84.03 0.86 -13.57 16 16 H 0.08 4.45 7.83 -2.92 -0.02 4.43 16 17 C -0.06 -3.43 5.49 84.86 0.47 -2.97 16 18 N -0.95 -56.28 10.31 21.65 0.22 -56.05 16 19 Si 0.98 46.04 29.55 68.60 2.03 48.07 16 20 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 21 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 22 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 23 C 0.16 7.75 5.15 86.73 0.45 8.20 16 24 C 0.09 3.29 3.98 31.78 0.13 3.41 16 25 H 0.10 2.75 8.00 -2.39 -0.02 2.73 16 26 O -0.57 -18.87 13.39 -148.98 -1.99 -20.86 16 27 H 0.05 0.58 8.14 -2.39 -0.02 0.57 16 28 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.81 6.53 -2.39 -0.02 0.80 16 31 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.09 1.25 7.77 -2.38 -0.02 1.23 16 33 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.05 0.70 8.00 -2.39 -0.02 0.68 16 35 H 0.07 0.72 6.03 -2.39 -0.01 0.70 16 36 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.42 7.91 8.27 -92.71 -0.77 7.14 16 38 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.03 1.40 8.14 -2.38 -0.02 1.38 16 40 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 41 H 0.02 1.06 7.29 -2.39 -0.02 1.04 16 42 H 0.03 1.47 7.51 -2.39 -0.02 1.45 16 43 H 0.40 9.58 9.12 -74.05 -0.68 8.90 16 Total: -1.00 -79.61 348.83 -0.18 -79.79 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -0.43 Total: 18.83 kcal Atomic # 6 Polarization: 17.16 SS G_CDS: 5.56 Total: 22.72 kcal Atomic # 7 Polarization: -108.31 SS G_CDS: -4.35 Total: -112.66 kcal Atomic # 8 Polarization: -53.76 SS G_CDS: -2.99 Total: -56.75 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -79.61 -0.18 -79.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195238895.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.451 kcal (2) G-P(sol) polarization free energy of solvation -79.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds