Wall clock time and date at job start Tue Mar 31 2020 03:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47147 * 2 1 4 4 H 1.08998 * 109.46919 * 304.42161 * 3 2 1 5 5 O 1.42899 * 109.47302 * 64.41991 * 3 2 1 6 6 C 1.42901 * 114.00160 * 246.17592 * 5 3 2 7 7 C 1.50696 * 109.47292 * 184.42656 * 3 2 1 8 8 O 1.21278 * 119.99930 * 245.00329 * 7 3 2 9 9 N 1.34773 * 120.00114 * 64.99361 * 7 3 2 10 10 C 1.46505 * 119.99869 * 180.02562 * 9 7 3 11 11 H 1.08997 * 110.64167 * 31.86631 * 10 9 7 12 12 C 1.54334 * 111.00304 * 268.78128 * 10 9 7 13 13 N 1.47019 * 107.26746 * 219.60217 * 12 10 9 14 14 C 1.36939 * 125.64704 * 178.85393 * 13 12 10 15 15 H 1.08001 * 120.00113 * 341.50114 * 14 13 12 16 16 C 1.38817 * 119.99669 * 161.50137 * 14 13 12 17 17 N 1.31614 * 119.99961 * 330.84820 * 16 14 13 18 18 Si 1.86798 * 119.99630 * 150.85270 * 16 14 13 19 19 H 1.48508 * 109.47111 * 269.99784 * 18 16 14 20 20 H 1.48493 * 109.47230 * 149.99858 * 18 16 14 21 21 H 1.48494 * 109.47407 * 29.99547 * 18 16 14 22 22 C 1.47428 * 108.70321 * 358.58681 * 13 12 10 23 23 C 1.54909 * 104.83049 * 24.35758 * 22 13 12 24 24 H 1.08993 * 111.00769 * 81.06739 * 23 22 13 25 25 O 1.42902 * 111.00221 * 204.87674 * 23 22 13 26 26 C 1.42894 * 113.99995 * 268.54415 * 25 23 22 27 27 H 1.08995 * 109.47357 * 177.36106 * 1 2 3 28 28 H 1.09000 * 109.47343 * 297.36768 * 1 2 3 29 29 H 1.09003 * 109.47015 * 57.36512 * 1 2 3 30 30 H 1.09005 * 109.47044 * 239.99941 * 2 1 3 31 31 H 1.08996 * 109.47245 * 119.99908 * 2 1 3 32 32 H 1.08996 * 109.46838 * 184.72884 * 6 5 3 33 33 H 1.08993 * 109.47096 * 304.72764 * 6 5 3 34 34 H 1.08996 * 109.46811 * 64.73018 * 6 5 3 35 35 H 0.97001 * 120.00417 * 0.02562 * 9 7 3 36 36 H 1.09009 * 109.98497 * 100.12595 * 12 10 9 37 37 H 1.08998 * 109.78320 * 338.96370 * 12 10 9 38 38 H 0.97001 * 120.00532 * 354.67756 * 17 16 14 39 39 H 1.09002 * 110.36504 * 143.19318 * 22 13 12 40 40 H 1.09000 * 110.36517 * 265.41070 * 22 13 12 41 41 H 1.09007 * 109.46926 * 180.02562 * 26 25 23 42 42 H 1.09000 * 109.47310 * 299.99688 * 26 25 23 43 43 H 1.09000 * 109.47127 * 60.00490 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6134 1.9787 -0.8477 5 8 1.6503 2.0856 1.2152 6 6 0.7135 3.1496 1.0353 7 6 3.5429 1.4440 -0.1097 8 8 4.2174 1.8637 0.8067 9 7 4.1376 0.9786 -1.2260 10 6 5.5988 0.9795 -1.3323 11 1 6.0554 0.8317 -0.3537 12 6 6.1059 2.2885 -1.9737 13 7 7.2097 1.9326 -2.8773 14 6 7.9176 2.8087 -3.6561 15 1 7.5122 3.7854 -3.8754 16 6 9.1563 2.4413 -4.1639 17 7 9.9086 1.5838 -3.5073 18 14 9.7553 3.1640 -5.7788 19 1 9.3153 2.2979 -6.9022 20 1 11.2380 3.2430 -5.7661 21 1 9.1885 4.5255 -5.9523 22 6 7.4325 0.4772 -2.8011 23 6 6.0772 -0.1073 -2.3310 24 1 5.3828 -0.2039 -3.1656 25 8 6.2613 -1.3627 -1.6736 26 6 6.1734 -2.4928 -2.5437 27 1 -0.3634 -1.0265 -0.0473 28 1 -0.3634 0.4724 0.9126 29 1 -0.3633 0.5542 -0.8655 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.5326 3.6399 1.9918 33 1 1.1170 3.8729 0.3268 34 1 -0.2235 2.7474 0.6502 35 1 3.5982 0.6431 -1.9591 36 1 6.4643 2.9679 -1.2003 37 1 5.3010 2.7583 -2.5389 38 1 9.6334 1.2677 -2.6325 39 1 7.6963 0.0820 -3.7821 40 1 8.2164 0.2508 -2.0783 41 1 6.3237 -3.4066 -1.9687 42 1 5.1890 -2.5159 -3.0111 43 1 6.9402 -2.4181 -3.3148 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211994511.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:25 Heat of formation + Delta-G solvation = -101.974732 kcal Electronic energy + Delta-G solvation = -23869.718889 eV Core-core repulsion = 20337.173672 eV Total energy + Delta-G solvation = -3532.545217 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.13764 -38.68675 -37.48619 -36.08727 -34.35473 -33.51711 -31.82209 -29.04444 -28.39777 -27.20845 -26.26353 -25.81234 -23.99554 -22.37356 -20.79720 -20.71162 -19.96777 -17.88154 -17.35729 -17.11496 -16.53979 -15.83369 -15.37018 -15.04554 -14.77831 -14.43054 -14.36615 -14.16540 -13.82238 -13.67595 -13.43814 -13.16856 -12.81463 -12.62902 -12.25030 -12.06864 -11.87316 -11.66901 -11.58889 -11.40640 -11.13477 -11.07945 -10.75872 -10.57229 -10.34635 -10.20936 -10.06675 -9.70880 -9.44968 -9.23530 -8.79065 -8.41462 -7.00111 -6.14696 -3.20590 2.69394 2.93321 3.49230 3.50713 3.68274 3.77026 3.92335 4.51452 4.57863 4.58427 4.72228 4.93713 4.99473 5.06668 5.15404 5.24395 5.26016 5.31289 5.41725 5.43898 5.47412 5.47648 5.55631 5.62737 5.64049 5.77363 5.78796 5.89188 5.94253 5.98033 6.36441 6.58242 6.67913 6.76717 6.86772 6.91581 7.47172 7.60600 7.75811 8.34636 8.44321 8.96231 9.76078 10.28835 11.17690 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.020690 B = 0.004169 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.017442 B = 6714.375817 C = 7536.236871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.131 4.131 3 C 0.074 3.926 4 H 0.088 0.912 5 O -0.356 6.356 6 C 0.027 3.973 7 C 0.503 3.497 8 O -0.518 6.518 9 N -0.715 5.715 10 C 0.139 3.861 11 H 0.105 0.895 12 C 0.129 3.871 13 N -0.597 5.597 14 C -0.342 4.342 15 H 0.067 0.933 16 C -0.023 4.023 17 N -0.911 5.911 18 Si 1.069 2.931 19 H -0.293 1.293 20 H -0.289 1.289 21 H -0.292 1.292 22 C 0.131 3.869 23 C 0.064 3.936 24 H 0.071 0.929 25 O -0.378 6.378 26 C 0.033 3.967 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.044 0.956 34 H 0.043 0.957 35 H 0.396 0.604 36 H 0.035 0.965 37 H 0.031 0.969 38 H 0.270 0.730 39 H 0.055 0.945 40 H 0.040 0.960 41 H 0.082 0.918 42 H 0.036 0.964 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.676 -5.250 2.803 20.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.169 4.169 3 C 0.012 3.988 4 H 0.106 0.894 5 O -0.273 6.273 6 C -0.069 4.069 7 C 0.287 3.713 8 O -0.392 6.392 9 N -0.367 5.367 10 C 0.034 3.966 11 H 0.123 0.877 12 C 0.002 3.998 13 N -0.326 5.326 14 C -0.469 4.469 15 H 0.085 0.915 16 C -0.226 4.226 17 N -0.551 5.551 18 Si 0.899 3.101 19 H -0.221 1.221 20 H -0.216 1.216 21 H -0.218 1.218 22 C 0.004 3.996 23 C 0.005 3.995 24 H 0.088 0.912 25 O -0.296 6.296 26 C -0.064 4.064 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.107 0.893 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.230 0.770 36 H 0.053 0.947 37 H 0.049 0.951 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.058 0.942 41 H 0.100 0.900 42 H 0.055 0.945 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -17.807 -4.962 2.714 18.684 hybrid contribution -1.644 0.044 0.220 1.659 sum -19.451 -4.918 2.934 20.276 Atomic orbital electron populations 1.21762 0.94772 1.02172 1.02076 1.21843 0.96984 0.94331 1.03755 1.22072 0.91834 0.95548 0.89307 0.89417 1.88027 1.62338 1.49027 1.27898 1.22943 0.91619 0.89515 1.02841 1.20762 0.90151 0.77887 0.82454 1.90729 1.65435 1.44816 1.38222 1.45937 1.07523 1.64855 1.18428 1.22070 0.78787 0.95067 1.00627 0.87742 1.21675 0.91831 0.93531 0.92741 1.44392 1.38483 1.01677 1.48048 1.19765 1.01083 0.99056 1.27027 0.91476 1.25816 0.91472 1.00501 1.04776 1.70745 1.35635 1.34379 1.14358 0.83458 0.75853 0.75199 0.75623 1.22062 1.21552 1.21798 1.21898 0.92716 0.85246 0.99732 1.23713 0.98864 0.83143 0.93792 0.91151 1.87894 1.93190 1.13728 1.34813 1.22735 0.99725 0.88971 0.94928 0.92123 0.92039 0.92763 0.90348 0.90257 0.89290 0.93764 0.93859 0.76982 0.94717 0.95090 0.91837 0.92699 0.94216 0.89960 0.94541 0.93688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.49 37.15 0.35 -0.72 16 2 C -0.13 -1.21 5.61 -26.73 -0.15 -1.36 16 3 C 0.07 0.85 2.65 -27.88 -0.07 0.78 16 4 H 0.09 0.79 7.59 -51.93 -0.39 0.39 16 5 O -0.36 -4.64 9.44 -55.09 -0.52 -5.16 16 6 C 0.03 0.25 10.65 101.05 1.08 1.32 16 7 C 0.50 7.92 7.18 -10.99 -0.08 7.84 16 8 O -0.52 -10.72 16.15 -14.30 -0.23 -10.95 16 9 N -0.71 -10.49 5.02 -52.02 -0.26 -10.75 16 10 C 0.14 2.61 3.04 -66.08 -0.20 2.41 16 11 H 0.10 2.21 7.55 -51.93 -0.39 1.82 16 12 C 0.13 2.84 7.01 -3.06 -0.02 2.82 16 13 N -0.60 -15.31 3.27 -170.06 -0.56 -15.87 16 14 C -0.34 -9.70 10.00 -15.06 -0.15 -9.85 16 15 H 0.07 1.91 7.98 -52.49 -0.42 1.49 16 16 C -0.02 -0.66 5.08 -17.43 -0.09 -0.75 16 17 N -0.91 -27.63 13.00 55.49 0.72 -26.91 16 18 Si 1.07 25.25 30.01 -169.99 -5.10 20.15 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 22 C 0.13 3.05 5.09 -2.53 -0.01 3.04 16 23 C 0.06 1.17 3.12 -24.58 -0.08 1.10 16 24 H 0.07 1.14 7.77 -51.93 -0.40 0.74 16 25 O -0.38 -6.57 10.52 -35.23 -0.37 -6.94 16 26 C 0.03 0.44 10.89 101.05 1.10 1.54 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.47 7.47 -51.93 -0.39 0.08 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.62 7.78 -51.93 -0.40 0.21 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.04 0.39 8.11 -51.93 -0.42 -0.03 16 34 H 0.04 0.29 7.52 -51.93 -0.39 -0.10 16 35 H 0.40 4.47 8.28 -40.82 -0.34 4.13 16 36 H 0.03 0.83 8.14 -51.92 -0.42 0.41 16 37 H 0.03 0.66 8.03 -51.93 -0.42 0.24 16 38 H 0.27 8.31 6.18 -40.82 -0.25 8.06 16 39 H 0.05 1.36 8.04 -51.93 -0.42 0.94 16 40 H 0.04 1.03 6.82 -51.93 -0.35 0.67 16 41 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.04 0.40 8.11 -51.93 -0.42 -0.02 16 43 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 352.76 15.07 5.32 5.32 Total: -1.00 -35.11 352.76 -6.49 -41.61 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -7.17 Total: 1.36 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: 1.68 Total: 8.16 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: -0.10 Total: -53.53 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -1.12 Total: -23.06 kcal Atomic # 14 Polarization: 25.25 SS G_CDS: -5.10 Total: 20.15 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.11 -6.49 -41.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211994511.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.368 kcal (2) G-P(sol) polarization free energy of solvation -35.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds