Wall clock time and date at job start Tue Mar 31 2020 04:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46954 * 2 1 4 4 O 1.42899 * 109.47200 * 119.99829 * 2 1 3 5 5 C 1.42903 * 113.99940 * 90.00095 * 4 2 1 6 6 C 1.52996 * 109.47425 * 179.97438 * 5 4 2 7 7 C 1.50698 * 109.47270 * 179.97438 * 6 5 4 8 8 O 1.21281 * 119.99811 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99963 * 179.97438 * 7 6 5 10 10 C 1.46497 * 119.99953 * 180.02562 * 9 7 6 11 11 H 1.08997 * 110.77693 * 31.76417 * 10 9 7 12 12 C 1.54325 * 110.72131 * 268.52482 * 10 9 7 13 13 N 1.47290 * 107.30599 * 219.45483 * 12 10 9 14 14 C 1.36938 * 125.79079 * 178.92205 * 13 12 10 15 15 H 1.07995 * 120.00281 * 0.02562 * 14 13 12 16 16 C 1.38810 * 119.99650 * 180.02562 * 14 13 12 17 17 N 1.31621 * 120.00025 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00113 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47190 * 89.99819 * 18 16 14 20 20 H 1.48500 * 109.47472 * 210.00112 * 18 16 14 21 21 H 1.48507 * 109.46699 * 329.99987 * 18 16 14 22 22 C 1.47425 * 108.55742 * 358.92448 * 13 12 10 23 23 C 1.54908 * 104.92961 * 24.15407 * 22 13 12 24 24 H 1.08999 * 111.00647 * 204.85975 * 23 22 13 25 25 O 1.42902 * 111.00325 * 81.05136 * 23 22 13 26 26 H 1.09006 * 109.47022 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46953 * 299.99684 * 1 2 3 28 28 H 1.08997 * 109.47191 * 60.00191 * 1 2 3 29 29 H 1.09002 * 109.46953 * 240.00316 * 2 1 3 30 30 H 1.08995 * 109.47054 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.47073 * 300.00051 * 3 2 1 32 32 H 1.09002 * 109.47282 * 59.99876 * 3 2 1 33 33 H 1.09005 * 109.47014 * 59.99837 * 5 4 2 34 34 H 1.09006 * 109.47392 * 300.00385 * 5 4 2 35 35 H 1.09005 * 109.47029 * 60.00004 * 6 5 4 36 36 H 1.09005 * 109.47117 * 300.00086 * 6 5 4 37 37 H 0.96996 * 119.99924 * 0.02562 * 9 7 6 38 38 H 1.09004 * 109.88239 * 338.86280 * 12 10 9 39 39 H 1.08995 * 109.88239 * 99.87201 * 12 10 9 40 40 H 0.97001 * 119.99611 * 180.02562 * 17 16 14 41 41 H 1.09002 * 110.36696 * 265.26054 * 22 13 12 42 42 H 1.08995 * 110.36608 * 143.04891 * 22 13 12 43 43 H 0.96700 * 114.00230 * 61.44969 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2001 -2.0782 0.9886 6 6 2.7092 -2.6925 2.2941 7 6 2.9129 -4.1738 2.1064 8 8 2.6749 -4.6875 1.0339 9 7 3.3606 -4.9275 3.1301 10 6 3.5592 -6.3674 2.9475 11 1 3.8527 -6.5902 1.9217 12 6 2.2845 -7.1476 3.3324 13 7 2.7136 -8.3685 4.0356 14 6 1.8846 -9.3234 4.5611 15 1 0.8135 -9.2146 4.4762 16 6 2.4209 -10.4312 5.2028 17 7 3.7264 -10.5636 5.3067 18 14 1.2901 -11.7342 5.9190 19 1 1.0171 -12.7715 4.8920 20 1 1.9419 -12.3625 7.0961 21 1 0.0123 -11.1042 6.3383 22 6 4.1870 -8.3913 4.0796 23 6 4.6132 -6.9077 3.9497 24 1 5.6200 -6.8247 3.5405 25 8 4.5174 -6.2353 5.2071 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 2.9320 -2.2467 0.1986 34 1 1.2538 -2.5434 0.7124 35 1 1.9776 -2.5240 3.0845 36 1 3.6556 -2.2272 2.5699 37 1 3.5513 -4.5166 3.9878 38 1 1.6627 -6.5404 3.9904 39 1 1.7260 -7.4113 2.4343 40 1 4.1011 -11.3379 5.7549 41 1 4.5825 -8.9738 3.2475 42 1 4.5319 -8.8034 5.0279 43 1 5.0890 -6.6036 5.8946 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219228316.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:37:51 Heat of formation + Delta-G solvation = -112.693584 kcal Electronic energy + Delta-G solvation = -22970.626313 eV Core-core repulsion = 19437.616291 eV Total energy + Delta-G solvation = -3533.010022 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -39.80703 -38.55357 -37.78160 -34.71451 -33.96970 -33.50464 -31.79672 -30.79561 -28.48973 -27.51474 -27.00234 -24.71210 -23.48863 -21.56627 -20.70652 -20.23023 -19.75725 -17.61125 -17.15502 -16.68736 -16.26642 -15.98341 -15.52689 -15.03013 -14.80486 -14.64786 -14.25405 -13.82781 -13.67014 -13.06602 -13.01481 -12.87429 -12.63807 -12.52713 -12.47412 -12.04207 -11.75340 -11.58741 -11.34799 -11.32308 -11.10435 -10.89354 -10.86945 -10.63535 -10.35246 -10.05188 -9.85144 -9.72964 -9.70035 -9.25735 -8.72417 -8.67867 -6.87091 -5.71111 -3.11013 2.78712 3.05102 3.38704 3.43747 3.45558 3.79452 4.46767 4.60296 4.62116 4.74887 4.82139 4.93030 4.96243 5.13167 5.30815 5.33604 5.35630 5.37754 5.46842 5.50728 5.53189 5.58464 5.68801 5.73559 5.74009 5.89734 5.91884 5.96374 6.05880 6.28184 6.53787 6.68173 6.93398 7.05756 7.24346 7.53996 7.69437 7.80436 8.11346 8.29567 8.44091 9.16387 9.77110 10.40830 11.34059 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.033037 B = 0.002884 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.329943 B = 9705.014996 C =10197.094318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.082 3.918 3 C -0.149 4.149 4 O -0.387 6.387 5 C 0.079 3.921 6 C -0.139 4.139 7 C 0.513 3.487 8 O -0.550 6.550 9 N -0.705 5.705 10 C 0.141 3.859 11 H 0.102 0.898 12 C 0.130 3.870 13 N -0.597 5.597 14 C -0.216 4.216 15 H 0.078 0.922 16 C -0.013 4.013 17 N -0.928 5.928 18 Si 0.917 3.083 19 H -0.289 1.289 20 H -0.290 1.290 21 H -0.281 1.281 22 C 0.125 3.875 23 C 0.067 3.933 24 H 0.058 0.942 25 O -0.563 6.563 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.409 0.591 38 H 0.030 0.970 39 H 0.028 0.972 40 H 0.252 0.748 41 H 0.022 0.978 42 H 0.116 0.884 43 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.850 19.765 -6.501 20.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.024 3.976 3 C -0.206 4.206 4 O -0.307 6.307 5 C 0.002 3.998 6 C -0.179 4.179 7 C 0.299 3.701 8 O -0.428 6.428 9 N -0.356 5.356 10 C 0.036 3.964 11 H 0.120 0.880 12 C 0.003 3.997 13 N -0.324 5.324 14 C -0.344 4.344 15 H 0.096 0.904 16 C -0.208 4.208 17 N -0.577 5.577 18 Si 0.748 3.252 19 H -0.216 1.216 20 H -0.216 1.216 21 H -0.207 1.207 22 C 0.000 4.000 23 C 0.007 3.993 24 H 0.076 0.924 25 O -0.369 6.369 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.245 0.755 38 H 0.048 0.952 39 H 0.046 0.954 40 H 0.063 0.937 41 H 0.040 0.960 42 H 0.133 0.867 43 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 0.282 19.642 -7.305 20.958 hybrid contribution -0.165 -1.095 0.797 1.364 sum 0.116 18.547 -6.507 19.656 Atomic orbital electron populations 1.22311 0.96021 1.02595 1.02458 1.22058 0.93668 0.93641 0.88241 1.21863 1.01777 0.94570 1.02431 1.87844 1.86711 1.20285 1.35844 1.22153 1.00540 0.80648 0.96480 1.21457 1.04413 0.92256 0.99738 1.20392 0.76860 0.88581 0.84233 1.90704 1.51229 1.74606 1.26251 1.45816 1.66445 1.08632 1.14757 1.22150 0.96295 0.78943 0.99017 0.88050 1.21645 0.93993 0.88799 0.95239 1.44355 1.01823 1.20983 1.65193 1.19102 0.89186 0.97981 1.28124 0.90392 1.24764 0.96137 0.98574 1.01340 1.69716 1.09103 1.30014 1.48878 0.86021 0.79382 0.81423 0.78384 1.21615 1.21642 1.20688 1.22626 0.84689 0.88900 1.03809 1.23572 0.96037 0.95830 0.83892 0.92375 1.86203 1.69782 1.59216 1.21690 0.92276 0.91783 0.91737 0.92135 0.92015 0.91346 0.91801 0.92490 0.92413 0.88078 0.88191 0.75496 0.95210 0.95432 0.93703 0.95970 0.86689 0.77150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.44 9.53 37.16 0.35 -1.08 16 2 C 0.08 0.73 3.34 -26.73 -0.09 0.64 16 3 C -0.15 -1.08 9.56 37.16 0.36 -0.72 16 4 O -0.39 -4.36 9.99 -35.23 -0.35 -4.71 16 5 C 0.08 0.92 5.04 37.16 0.19 1.11 16 6 C -0.14 -1.57 6.07 -27.89 -0.17 -1.74 16 7 C 0.51 7.76 7.83 -10.98 -0.09 7.68 16 8 O -0.55 -10.25 15.63 5.56 0.09 -10.17 16 9 N -0.71 -10.89 5.07 -52.03 -0.26 -11.16 16 10 C 0.14 2.62 3.20 -66.10 -0.21 2.41 16 11 H 0.10 1.94 7.55 -51.93 -0.39 1.55 16 12 C 0.13 2.90 7.01 -2.92 -0.02 2.88 16 13 N -0.60 -15.39 3.40 -169.86 -0.58 -15.97 16 14 C -0.22 -6.06 10.28 -15.06 -0.15 -6.22 16 15 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 16 C -0.01 -0.37 5.49 -17.43 -0.10 -0.47 16 17 N -0.93 -26.44 10.09 55.49 0.56 -25.88 16 18 Si 0.92 22.09 29.55 -169.99 -5.02 17.06 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 C 0.13 2.93 5.62 -2.53 -0.01 2.91 16 23 C 0.07 1.22 4.28 -24.58 -0.11 1.11 16 24 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 25 O -0.56 -9.47 12.24 -35.23 -0.43 -9.91 16 26 H 0.06 0.52 7.87 -51.93 -0.41 0.11 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.52 7.79 -51.93 -0.40 0.11 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.68 8.04 -51.93 -0.42 0.26 16 34 H 0.06 0.72 7.83 -51.93 -0.41 0.31 16 35 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.41 5.69 7.59 -40.82 -0.31 5.38 16 38 H 0.03 0.68 8.03 -51.93 -0.42 0.26 16 39 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 41 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.12 2.95 5.86 -51.93 -0.30 2.64 16 43 H 0.38 5.29 9.11 45.56 0.42 5.70 16 LS Contribution 351.79 15.07 5.30 5.30 Total: -1.00 -32.31 351.79 -7.17 -39.48 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -6.42 Total: 7.44 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: -0.05 Total: 8.52 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: -0.28 Total: -53.01 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.70 Total: -24.79 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.31 -7.17 -39.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219228316.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.214 kcal (2) G-P(sol) polarization free energy of solvation -32.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds