Wall clock time and date at job start Tue Mar 31 2020 03:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46883 * 2 1 4 4 H 1.08991 * 109.47052 * 304.99616 * 3 2 1 5 5 C 1.53004 * 109.46728 * 184.99542 * 3 2 1 6 6 O 1.42900 * 109.47219 * 65.00107 * 3 2 1 7 7 C 1.42900 * 113.99530 * 209.99791 * 6 3 2 8 8 C 1.50698 * 109.46910 * 179.97438 * 7 6 3 9 9 O 1.21279 * 120.00299 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00007 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00217 * 180.02562 * 10 8 7 12 12 H 1.09000 * 110.88797 * 34.29195 * 11 10 8 13 13 C 1.54910 * 111.00053 * 270.41787 * 11 10 8 14 14 N 1.47477 * 104.81155 * 204.94925 * 13 11 10 15 15 C 1.36936 * 125.62930 * 204.07307 * 14 13 11 16 16 H 1.08000 * 119.99784 * 354.78497 * 15 14 13 17 17 C 1.38810 * 119.99744 * 174.78943 * 15 14 13 18 18 N 1.31615 * 120.00444 * 7.04841 * 17 15 14 19 19 Si 1.86802 * 119.99708 * 187.05145 * 17 15 14 20 20 H 1.48500 * 109.47169 * 94.98831 * 19 17 15 21 21 H 1.48500 * 109.47271 * 214.98402 * 19 17 15 22 22 H 1.48493 * 109.47422 * 334.98604 * 19 17 15 23 23 C 1.47018 * 108.71933 * 24.06644 * 14 13 11 24 24 C 1.54324 * 107.27334 * 358.97832 * 23 14 13 25 25 H 1.09004 * 110.71955 * 219.43821 * 24 23 14 26 26 O 1.42900 * 110.87356 * 96.24412 * 24 23 14 27 27 H 1.09002 * 109.47109 * 300.00057 * 1 2 3 28 28 H 1.08996 * 109.46719 * 60.00050 * 1 2 3 29 29 H 1.08997 * 109.46685 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47750 * 239.99817 * 2 1 3 31 31 H 1.09006 * 109.47051 * 119.99506 * 2 1 3 32 32 H 1.08997 * 109.46589 * 179.97438 * 5 3 2 33 33 H 1.08991 * 109.47414 * 299.99852 * 5 3 2 34 34 H 1.09004 * 109.47293 * 60.00059 * 5 3 2 35 35 H 1.08998 * 109.47597 * 299.99980 * 7 6 3 36 36 H 1.09007 * 109.47132 * 60.00195 * 7 6 3 37 37 H 0.97002 * 119.99927 * 359.97438 * 10 8 7 38 38 H 1.08996 * 110.36800 * 323.75130 * 13 11 10 39 39 H 1.09000 * 110.37094 * 86.07898 * 13 11 10 40 40 H 0.97000 * 120.00457 * 180.02562 * 18 17 15 41 41 H 1.09006 * 109.88455 * 239.55827 * 23 14 13 42 42 H 1.09000 * 110.01220 * 118.46592 * 23 14 13 43 43 H 0.96693 * 114.00393 * 66.38610 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5649 1.4444 -0.1256 6 8 1.6620 2.0815 1.2210 7 6 1.4560 3.4904 1.1002 8 6 1.0627 4.0572 2.4399 9 8 0.9686 3.3268 3.4035 10 7 0.8155 5.3760 2.5674 11 6 0.4337 5.9272 3.8699 12 1 0.9369 5.3973 4.6787 13 6 -1.1037 5.8953 4.0572 14 7 -1.3873 6.9669 5.0299 15 6 -2.4846 7.0332 5.8464 16 1 -3.2738 6.3022 5.7507 17 6 -2.5825 8.0399 6.7971 18 7 -1.6928 9.0095 6.8230 19 14 -3.9770 8.0185 8.0398 20 1 -3.5143 7.3678 9.2919 21 1 -4.4001 9.4114 8.3331 22 1 -5.1251 7.2595 7.4825 23 6 -0.2971 7.9519 4.9780 24 6 0.7251 7.4497 3.9366 25 1 1.7442 7.6328 4.2772 26 8 0.5008 8.0636 2.6659 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 1.8935 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 3.9281 2.4720 -0.1261 33 1 3.9995 0.9054 0.7162 34 1 3.8533 0.9570 -1.0570 35 1 2.3769 3.9645 0.7608 36 1 0.6618 3.6808 0.3782 37 1 0.8911 5.9603 1.7968 38 1 -1.6054 6.0996 3.1114 39 1 -1.4177 4.9297 4.4534 40 1 -1.7610 9.7128 7.4875 41 1 0.1782 8.0308 5.9558 42 1 -0.6867 8.9241 4.6759 43 1 0.6689 9.0157 2.6538 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219476097.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:38 Heat of formation + Delta-G solvation = -110.146568 kcal Electronic energy + Delta-G solvation = -23261.596549 eV Core-core repulsion = 19728.696974 eV Total energy + Delta-G solvation = -3532.899575 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.79159 -38.57143 -37.60397 -34.85089 -33.98063 -33.87436 -31.70270 -30.14121 -28.97372 -27.88270 -26.50493 -24.36996 -23.79823 -21.23602 -20.87022 -20.38944 -19.87858 -17.53302 -17.28679 -16.81376 -16.58068 -16.01633 -15.25483 -14.85504 -14.58890 -14.39681 -14.06382 -13.94486 -13.62395 -13.32142 -13.16625 -12.87377 -12.71230 -12.61740 -12.27924 -12.12359 -11.82035 -11.54843 -11.29820 -11.20473 -10.93844 -10.85362 -10.77274 -10.51447 -10.45023 -10.11235 -9.82855 -9.77817 -9.56338 -9.30988 -8.68426 -8.61563 -6.86848 -5.75846 -3.07444 2.81411 2.89560 3.41087 3.46664 3.48166 3.92894 4.46602 4.52577 4.58268 4.73671 4.84331 4.93667 5.02767 5.11708 5.12248 5.29492 5.31361 5.38359 5.40135 5.43512 5.52265 5.71646 5.72608 5.78210 5.87803 5.90212 5.94913 6.07998 6.17731 6.22124 6.60858 6.68480 6.90349 7.02579 7.32742 7.44274 7.73360 7.82231 8.05774 8.20028 8.48908 9.18072 9.78372 10.43256 11.36903 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.026626 B = 0.003293 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.353109 B = 8499.830160 C = 9234.727079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C 0.082 3.918 4 H 0.061 0.939 5 C -0.176 4.176 6 O -0.353 6.353 7 C 0.046 3.954 8 C 0.509 3.491 9 O -0.522 6.522 10 N -0.708 5.708 11 C 0.141 3.859 12 H 0.104 0.896 13 C 0.131 3.869 14 N -0.601 5.601 15 C -0.225 4.225 16 H 0.080 0.920 17 C -0.008 4.008 18 N -0.925 5.925 19 Si 0.913 3.087 20 H -0.288 1.288 21 H -0.291 1.291 22 H -0.280 1.280 23 C 0.154 3.846 24 C 0.068 3.932 25 H 0.061 0.939 26 O -0.568 6.568 27 H 0.065 0.935 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.406 0.594 38 H 0.025 0.975 39 H 0.045 0.955 40 H 0.252 0.748 41 H 0.057 0.943 42 H 0.051 0.949 43 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.226 -9.547 -16.536 21.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C 0.024 3.976 4 H 0.079 0.921 5 C -0.234 4.234 6 O -0.271 6.271 7 C -0.035 4.035 8 C 0.293 3.707 9 O -0.397 6.397 10 N -0.362 5.362 11 C 0.035 3.965 12 H 0.122 0.878 13 C 0.004 3.996 14 N -0.328 5.328 15 C -0.353 4.353 16 H 0.098 0.902 17 C -0.204 4.204 18 N -0.573 5.573 19 Si 0.744 3.256 20 H -0.215 1.215 21 H -0.218 1.218 22 H -0.206 1.206 23 C 0.028 3.972 24 C 0.009 3.991 25 H 0.079 0.921 26 O -0.374 6.374 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.241 0.759 38 H 0.043 0.957 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 9.893 -10.667 -15.647 21.366 hybrid contribution -0.466 1.192 0.222 1.299 sum 9.427 -9.475 -15.425 20.411 Atomic orbital electron populations 1.21751 0.95233 1.01692 1.02429 1.21619 0.96799 0.94640 1.02640 1.22229 0.94231 0.94253 0.86902 0.92095 1.22310 0.96168 1.02442 1.02464 1.88074 1.89339 1.18013 1.31711 1.22227 1.01280 0.84001 0.95947 1.20217 0.77830 0.82533 0.90097 1.90739 1.50579 1.58436 1.39927 1.45661 1.69825 1.07642 1.13036 1.22337 0.97713 0.91482 0.84918 0.87833 1.21853 0.91496 0.92868 0.93410 1.44293 1.23168 1.21694 1.43608 1.19105 0.96060 1.10702 1.09443 0.90228 1.24807 0.99025 0.97253 0.99336 1.69922 1.37003 1.13325 1.37027 0.86071 0.81145 0.76796 0.81635 1.21535 1.21788 1.20578 1.21863 0.87126 0.93017 0.95188 1.23506 0.98507 0.92104 0.85025 0.92117 1.86237 1.92503 1.26322 1.32365 0.91552 0.93110 0.92744 0.90839 0.90906 0.92449 0.91569 0.91654 0.90639 0.90424 0.75865 0.95691 0.93639 0.93726 0.92489 0.93082 0.77277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.81 37.16 0.36 -1.04 16 2 C -0.12 -1.03 5.64 -26.72 -0.15 -1.18 16 3 C 0.08 0.76 2.72 -26.73 -0.07 0.68 16 4 H 0.06 0.47 7.79 -51.93 -0.40 0.07 16 5 C -0.18 -1.39 9.53 37.16 0.35 -1.03 16 6 O -0.35 -4.64 9.06 -55.14 -0.50 -5.14 16 7 C 0.05 0.53 6.23 36.00 0.22 0.75 16 8 C 0.51 8.12 7.91 -10.99 -0.09 8.03 16 9 O -0.52 -10.80 16.19 -14.35 -0.23 -11.03 16 10 N -0.71 -10.84 5.18 -51.73 -0.27 -11.11 16 11 C 0.14 2.65 3.25 -65.79 -0.21 2.44 16 12 H 0.10 2.10 7.63 -51.93 -0.40 1.70 16 13 C 0.13 2.93 6.93 -2.50 -0.02 2.91 16 14 N -0.60 -15.63 3.40 -170.03 -0.58 -16.21 16 15 C -0.22 -6.40 10.26 -15.06 -0.15 -6.55 16 16 H 0.08 2.21 7.84 -52.49 -0.41 1.80 16 17 C -0.01 -0.24 5.48 -17.43 -0.10 -0.33 16 18 N -0.92 -26.86 10.36 55.49 0.57 -26.29 16 19 Si 0.91 22.34 29.56 -169.99 -5.02 17.31 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 C 0.15 3.60 5.15 -3.07 -0.02 3.59 16 24 C 0.07 1.22 4.19 -24.90 -0.10 1.12 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 26 O -0.57 -8.81 12.14 -35.23 -0.43 -9.24 16 27 H 0.07 0.76 7.82 -51.93 -0.41 0.36 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.43 7.87 -51.93 -0.41 0.02 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 0.67 7.87 -51.93 -0.41 0.27 16 36 H 0.08 0.73 8.09 -51.92 -0.42 0.31 16 37 H 0.41 5.27 7.56 -40.82 -0.31 4.96 16 38 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.06 1.47 7.30 -51.93 -0.38 1.09 16 42 H 0.05 1.30 7.54 -51.93 -0.39 0.91 16 43 H 0.38 4.51 9.12 45.56 0.42 4.93 16 LS Contribution 352.31 15.07 5.31 5.31 Total: -1.00 -34.15 352.31 -7.57 -41.72 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -6.46 Total: 5.29 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: 0.03 Total: 9.38 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: -0.27 Total: -53.60 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -1.16 Total: -25.41 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.15 -7.57 -41.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219476097.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.424 kcal (2) G-P(sol) polarization free energy of solvation -34.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds