Wall clock time and date at job start Tue Mar 31 2020 03:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46883 * 2 1 4 4 H 1.08991 * 109.47052 * 304.99616 * 3 2 1 5 5 C 1.53004 * 109.46728 * 184.99542 * 3 2 1 6 6 O 1.42900 * 109.47219 * 65.00107 * 3 2 1 7 7 C 1.42900 * 113.99530 * 209.99791 * 6 3 2 8 8 C 1.50698 * 109.46910 * 179.97438 * 7 6 3 9 9 O 1.21279 * 120.00299 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00007 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00217 * 180.02562 * 10 8 7 12 12 H 1.09000 * 110.88797 * 34.29195 * 11 10 8 13 13 C 1.54910 * 111.00053 * 270.41787 * 11 10 8 14 14 N 1.47477 * 104.81155 * 204.94925 * 13 11 10 15 15 C 1.36936 * 125.62930 * 204.07307 * 14 13 11 16 16 H 1.08000 * 119.99784 * 354.78497 * 15 14 13 17 17 C 1.38810 * 119.99744 * 174.78943 * 15 14 13 18 18 N 1.31615 * 120.00444 * 7.04841 * 17 15 14 19 19 Si 1.86802 * 119.99708 * 187.05145 * 17 15 14 20 20 H 1.48500 * 109.47169 * 94.98831 * 19 17 15 21 21 H 1.48500 * 109.47271 * 214.98402 * 19 17 15 22 22 H 1.48493 * 109.47422 * 334.98604 * 19 17 15 23 23 C 1.47018 * 108.71933 * 24.06644 * 14 13 11 24 24 C 1.54324 * 107.27334 * 358.97832 * 23 14 13 25 25 H 1.09004 * 110.71955 * 219.43821 * 24 23 14 26 26 O 1.42900 * 110.87356 * 96.24412 * 24 23 14 27 27 H 1.09002 * 109.47109 * 300.00057 * 1 2 3 28 28 H 1.08996 * 109.46719 * 60.00050 * 1 2 3 29 29 H 1.08997 * 109.46685 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47750 * 239.99817 * 2 1 3 31 31 H 1.09006 * 109.47051 * 119.99506 * 2 1 3 32 32 H 1.08997 * 109.46589 * 179.97438 * 5 3 2 33 33 H 1.08991 * 109.47414 * 299.99852 * 5 3 2 34 34 H 1.09004 * 109.47293 * 60.00059 * 5 3 2 35 35 H 1.08998 * 109.47597 * 299.99980 * 7 6 3 36 36 H 1.09007 * 109.47132 * 60.00195 * 7 6 3 37 37 H 0.97002 * 119.99927 * 359.97438 * 10 8 7 38 38 H 1.08996 * 110.36800 * 323.75130 * 13 11 10 39 39 H 1.09000 * 110.37094 * 86.07898 * 13 11 10 40 40 H 0.97000 * 120.00457 * 180.02562 * 18 17 15 41 41 H 1.09006 * 109.88455 * 239.55827 * 23 14 13 42 42 H 1.09000 * 110.01220 * 118.46592 * 23 14 13 43 43 H 0.96693 * 114.00393 * 66.38610 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5649 1.4444 -0.1256 6 8 1.6620 2.0815 1.2210 7 6 1.4560 3.4904 1.1002 8 6 1.0627 4.0572 2.4399 9 8 0.9686 3.3268 3.4035 10 7 0.8155 5.3760 2.5674 11 6 0.4337 5.9272 3.8699 12 1 0.9369 5.3973 4.6787 13 6 -1.1037 5.8953 4.0572 14 7 -1.3873 6.9669 5.0299 15 6 -2.4846 7.0332 5.8464 16 1 -3.2738 6.3022 5.7507 17 6 -2.5825 8.0399 6.7971 18 7 -1.6928 9.0095 6.8230 19 14 -3.9770 8.0185 8.0398 20 1 -3.5143 7.3678 9.2919 21 1 -4.4001 9.4114 8.3331 22 1 -5.1251 7.2595 7.4825 23 6 -0.2971 7.9519 4.9780 24 6 0.7251 7.4497 3.9366 25 1 1.7442 7.6328 4.2772 26 8 0.5008 8.0636 2.6659 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 1.8935 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 3.9281 2.4720 -0.1261 33 1 3.9995 0.9054 0.7162 34 1 3.8533 0.9570 -1.0570 35 1 2.3769 3.9645 0.7608 36 1 0.6618 3.6808 0.3782 37 1 0.8911 5.9603 1.7968 38 1 -1.6054 6.0996 3.1114 39 1 -1.4177 4.9297 4.4534 40 1 -1.7610 9.7128 7.4875 41 1 0.1782 8.0308 5.9558 42 1 -0.6867 8.9241 4.6759 43 1 0.6689 9.0157 2.6538 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219476097.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:36 Heat of formation + Delta-G solvation = -136.453143 kcal Electronic energy + Delta-G solvation = -23262.737287 eV Core-core repulsion = 19728.696974 eV Total energy + Delta-G solvation = -3534.040314 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -41.09952 -39.74920 -38.87002 -36.46327 -35.43955 -34.70261 -33.62634 -30.88976 -30.51083 -29.38763 -28.01606 -26.22988 -24.51013 -22.52781 -21.94849 -21.92383 -21.38397 -19.27102 -18.43513 -18.09510 -17.87080 -16.97140 -16.89443 -16.53952 -15.88134 -15.67957 -15.41420 -14.90472 -14.78074 -14.60295 -14.46280 -14.33429 -14.10388 -13.87336 -13.62750 -13.20764 -12.94936 -12.80542 -12.78014 -12.54672 -12.30153 -12.22764 -12.10504 -11.95692 -11.90209 -11.89636 -11.44066 -10.92317 -10.81153 -10.76042 -10.55563 -10.09954 -8.96117 -7.91514 -5.26046 1.44099 1.46761 1.54981 1.57754 1.79249 2.46557 2.97864 3.19726 3.28383 3.59076 3.74780 3.85473 3.93387 3.97011 4.09407 4.21548 4.23389 4.26123 4.34798 4.45613 4.49208 4.65824 4.70192 4.75076 4.81833 4.85847 5.02129 5.07708 5.12035 5.23902 5.33081 5.35481 5.42382 5.45534 5.48519 5.63612 6.13097 6.22173 6.62556 6.88277 7.05218 7.27509 7.69101 8.33156 9.18900 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.026626 B = 0.003293 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.353109 B = 8499.830160 C = 9234.727079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C 0.075 3.925 4 H 0.083 0.917 5 C -0.173 4.173 6 O -0.389 6.389 7 C 0.052 3.948 8 C 0.505 3.495 9 O -0.577 6.577 10 N -0.693 5.693 11 C 0.152 3.848 12 H 0.087 0.913 13 C 0.132 3.868 14 N -0.622 5.622 15 C -0.250 4.250 16 H 0.075 0.925 17 C -0.058 4.058 18 N -0.945 5.945 19 Si 0.978 3.022 20 H -0.287 1.287 21 H -0.289 1.289 22 H -0.271 1.271 23 C 0.158 3.842 24 C 0.095 3.905 25 H 0.093 0.907 26 O -0.563 6.563 27 H 0.034 0.966 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.100 0.900 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.049 0.951 34 H 0.087 0.913 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.422 0.578 38 H 0.027 0.973 39 H 0.025 0.975 40 H 0.250 0.750 41 H 0.026 0.974 42 H 0.026 0.974 43 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.113 -9.600 -18.923 23.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C 0.018 3.982 4 H 0.101 0.899 5 C -0.231 4.231 6 O -0.309 6.309 7 C -0.027 4.027 8 C 0.292 3.708 9 O -0.455 6.455 10 N -0.347 5.347 11 C 0.045 3.955 12 H 0.105 0.895 13 C 0.005 3.995 14 N -0.349 5.349 15 C -0.379 4.379 16 H 0.093 0.907 17 C -0.252 4.252 18 N -0.594 5.594 19 Si 0.806 3.194 20 H -0.214 1.214 21 H -0.215 1.215 22 H -0.196 1.196 23 C 0.033 3.967 24 C 0.035 3.965 25 H 0.110 0.890 26 O -0.371 6.371 27 H 0.054 0.946 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.119 0.881 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.106 0.894 35 H 0.128 0.872 36 H 0.124 0.876 37 H 0.260 0.740 38 H 0.045 0.955 39 H 0.043 0.957 40 H 0.060 0.940 41 H 0.044 0.956 42 H 0.045 0.955 43 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 10.799 -10.699 -18.101 23.638 hybrid contribution -0.765 1.186 0.912 1.680 sum 10.033 -9.514 -17.189 22.060 Atomic orbital electron populations 1.21735 0.95859 1.01914 1.01492 1.21674 0.96235 0.94747 1.03103 1.22484 0.95251 0.94260 0.86180 0.89911 1.22296 0.95005 1.02841 1.02944 1.88045 1.89835 1.18796 1.34182 1.22280 1.03732 0.83677 0.92997 1.21134 0.76304 0.82001 0.91349 1.90719 1.52926 1.59658 1.42239 1.45469 1.69157 1.07978 1.12106 1.21898 0.94753 0.92385 0.86421 0.89476 1.21890 0.94319 0.90919 0.92370 1.44573 1.23166 1.23263 1.43910 1.19408 0.97093 1.10822 1.10530 0.90673 1.25613 1.01673 0.96961 1.00912 1.70110 1.38378 1.13563 1.37318 0.85068 0.78582 0.76745 0.78982 1.21381 1.21500 1.19606 1.21740 0.87526 0.91880 0.95600 1.23088 0.98023 0.90972 0.84412 0.88971 1.86195 1.92518 1.28129 1.30289 0.94645 0.91747 0.92044 0.88135 0.92618 0.91925 0.93136 0.89431 0.87176 0.87634 0.73993 0.95515 0.95700 0.94041 0.95618 0.95545 0.74975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.81 71.98 0.71 -1.93 16 2 C -0.12 -1.87 5.64 30.60 0.17 -1.70 16 3 C 0.08 1.21 2.72 30.60 0.08 1.29 16 4 H 0.08 0.96 7.79 -2.39 -0.02 0.94 16 5 C -0.17 -2.27 9.53 71.98 0.69 -1.58 16 6 O -0.39 -9.69 9.06 -129.94 -1.18 -10.87 16 7 C 0.05 1.07 6.23 71.24 0.44 1.51 16 8 C 0.50 15.56 7.91 87.66 0.69 16.25 16 9 O -0.58 -24.29 16.19 16.01 0.26 -24.03 16 10 N -0.69 -20.00 5.18 -435.98 -2.26 -22.25 16 11 C 0.15 5.67 3.25 46.38 0.15 5.82 16 12 H 0.09 3.58 7.63 -2.39 -0.02 3.56 16 13 C 0.13 6.00 6.93 86.85 0.60 6.60 16 14 N -0.62 -33.21 3.40 -691.86 -2.35 -35.56 16 15 C -0.25 -14.59 10.26 84.03 0.86 -13.72 16 16 H 0.08 4.31 7.84 -2.91 -0.02 4.28 16 17 C -0.06 -3.35 5.48 84.86 0.46 -2.88 16 18 N -0.95 -56.05 10.36 21.65 0.22 -55.82 16 19 Si 0.98 46.51 29.56 68.60 2.03 48.54 16 20 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 21 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 22 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 23 C 0.16 7.54 5.15 86.73 0.45 7.99 16 24 C 0.10 3.27 4.19 31.78 0.13 3.41 16 25 H 0.09 2.68 8.14 -2.38 -0.02 2.66 16 26 O -0.56 -15.89 12.14 -148.98 -1.81 -17.70 16 27 H 0.03 0.82 7.82 -2.39 -0.02 0.80 16 28 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.06 0.75 7.87 -2.39 -0.02 0.73 16 33 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 35 H 0.11 1.50 7.87 -2.39 -0.02 1.48 16 36 H 0.11 1.58 8.09 -2.38 -0.02 1.56 16 37 H 0.42 9.59 7.56 -92.71 -0.70 8.89 16 38 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 41 H 0.03 1.37 7.30 -2.38 -0.02 1.35 16 42 H 0.03 1.37 7.54 -2.39 -0.02 1.36 16 43 H 0.40 8.27 9.12 -74.06 -0.68 7.60 16 Total: -1.00 -77.40 352.31 -0.01 -77.40 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -0.37 Total: 19.24 kcal Atomic # 6 Polarization: 15.61 SS G_CDS: 5.44 Total: 21.06 kcal Atomic # 7 Polarization: -109.26 SS G_CDS: -4.38 Total: -113.64 kcal Atomic # 8 Polarization: -49.87 SS G_CDS: -2.73 Total: -52.60 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -77.40 -0.01 -77.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219476097.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.049 kcal (2) G-P(sol) polarization free energy of solvation -77.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds