Wall clock time and date at job start Tue Mar 31 2020 03:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47705 * 2 1 4 4 H 1.09002 * 109.47103 * 54.99637 * 3 2 1 5 5 C 1.52997 * 109.47482 * 174.99884 * 3 2 1 6 6 O 1.42906 * 109.46831 * 295.00170 * 3 2 1 7 7 C 1.42900 * 113.99734 * 150.00136 * 6 3 2 8 8 C 1.50704 * 109.46831 * 179.97438 * 7 6 3 9 9 O 1.21281 * 119.99818 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00041 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99951 * 180.02562 * 10 8 7 12 12 H 1.08998 * 110.88373 * 34.29864 * 11 10 8 13 13 C 1.54909 * 111.00121 * 270.42072 * 11 10 8 14 14 N 1.47477 * 104.80963 * 204.95094 * 13 11 10 15 15 C 1.36925 * 125.62909 * 204.06823 * 14 13 11 16 16 H 1.08003 * 120.00209 * 359.97438 * 15 14 13 17 17 C 1.38813 * 119.99966 * 179.97438 * 15 14 13 18 18 N 1.31618 * 120.00139 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 120.00135 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47067 * 60.00096 * 19 17 15 21 21 H 1.48503 * 109.46963 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46839 * 299.99927 * 19 17 15 23 23 C 1.47022 * 108.71829 * 24.06744 * 14 13 11 24 24 C 1.54321 * 107.27609 * 358.97568 * 23 14 13 25 25 H 1.09001 * 110.72278 * 219.44266 * 24 23 14 26 26 O 1.42905 * 110.87069 * 96.23978 * 24 23 14 27 27 H 1.09001 * 109.46974 * 300.00556 * 1 2 3 28 28 H 1.09000 * 109.46929 * 59.99736 * 1 2 3 29 29 H 1.09000 * 109.47812 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46974 * 239.99443 * 2 1 3 31 31 H 1.09002 * 109.46661 * 119.99810 * 2 1 3 32 32 H 1.09002 * 109.47153 * 59.99783 * 5 3 2 33 33 H 1.09001 * 109.46832 * 299.99974 * 5 3 2 34 34 H 1.09004 * 109.47261 * 179.97438 * 5 3 2 35 35 H 1.09000 * 109.47044 * 299.99435 * 7 6 3 36 36 H 1.08995 * 109.47735 * 59.99930 * 7 6 3 37 37 H 0.96993 * 119.99999 * 359.97438 * 10 8 7 38 38 H 1.09006 * 110.36572 * 323.74807 * 13 11 10 39 39 H 1.08997 * 110.37044 * 86.07731 * 13 11 10 40 40 H 0.97001 * 120.00204 * 179.97438 * 18 17 15 41 41 H 1.09001 * 109.88398 * 239.56010 * 23 14 13 42 42 H 1.09006 * 110.01161 * 118.46806 * 23 14 13 43 43 H 0.96700 * 113.99748 * 66.39528 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4441 0.1257 6 8 1.6620 2.0813 -1.2211 7 6 1.4562 3.4902 -1.1003 8 6 1.0641 4.0572 -2.4405 9 8 0.9707 3.3267 -3.4041 10 7 0.8172 5.3760 -2.5681 11 6 0.4355 5.9271 -3.8707 12 1 -0.1672 5.2139 -4.4328 13 6 1.6850 6.3570 -4.6793 14 7 1.1955 7.3944 -5.6062 15 6 1.7772 7.7389 -6.7969 16 1 2.6736 7.2342 -7.1261 17 6 1.2149 8.7368 -7.5811 18 7 0.1228 9.3522 -7.1798 19 14 2.0081 9.2063 -9.2059 20 1 2.0406 8.0221 -10.1013 21 1 1.2204 10.2902 -9.8463 22 1 3.3940 9.6804 -8.9614 23 6 -0.0201 7.9973 -5.0402 24 6 -0.3102 7.2777 -3.7063 25 1 -1.3806 7.1145 -3.5809 26 8 0.2192 8.0166 -2.6035 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3635 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5138 0.8900 32 1 3.9995 0.9050 -0.7160 33 1 3.8532 0.9568 1.0572 34 1 3.9284 2.4718 0.1253 35 1 0.6620 3.6808 -0.3784 36 1 2.3771 3.9643 -0.7610 37 1 0.8916 5.9601 -1.7973 38 1 2.4435 6.7703 -4.0144 39 1 2.0872 5.5100 -5.2350 40 1 -0.2699 10.0498 -7.7276 41 1 -0.8563 7.8588 -5.7256 42 1 0.1396 9.0606 -4.8607 43 1 -0.2129 8.8693 -2.4578 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219476098.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:40 Heat of formation + Delta-G solvation = -136.301359 kcal Electronic energy + Delta-G solvation = -23247.327925 eV Core-core repulsion = 19713.294193 eV Total energy + Delta-G solvation = -3534.033732 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -41.09948 -39.74914 -38.87036 -36.46155 -35.44009 -34.70059 -33.62142 -30.88711 -30.50962 -29.38714 -28.01519 -26.22806 -24.50724 -22.52763 -21.94587 -21.92096 -21.38662 -19.27331 -18.41352 -18.09633 -17.90293 -16.97189 -16.87192 -16.53493 -15.83854 -15.74748 -15.38471 -14.89648 -14.77697 -14.64104 -14.45664 -14.31715 -14.09267 -13.87465 -13.63105 -13.19168 -12.95216 -12.81318 -12.74580 -12.54010 -12.29919 -12.22983 -12.15497 -11.95340 -11.88975 -11.87354 -11.43865 -10.92836 -10.81459 -10.77066 -10.55796 -10.10199 -8.96248 -7.89787 -5.25755 1.44332 1.47850 1.53818 1.57574 1.79369 2.47017 2.97973 3.19991 3.28988 3.59091 3.74827 3.85949 3.93609 3.96513 4.09689 4.21829 4.23478 4.25546 4.34874 4.46224 4.49497 4.65876 4.70038 4.75179 4.81367 4.84779 5.02232 5.08174 5.12704 5.24794 5.32325 5.34310 5.43344 5.46340 5.48263 5.64055 6.13349 6.22078 6.62534 6.88331 7.05641 7.27450 7.69475 8.33135 9.19873 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.029319 B = 0.003168 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.787935 B = 8836.252689 C = 9239.726360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C 0.076 3.924 4 H 0.085 0.915 5 C -0.175 4.175 6 O -0.389 6.389 7 C 0.052 3.948 8 C 0.505 3.495 9 O -0.577 6.577 10 N -0.693 5.693 11 C 0.152 3.848 12 H 0.087 0.913 13 C 0.132 3.868 14 N -0.622 5.622 15 C -0.250 4.250 16 H 0.075 0.925 17 C -0.059 4.059 18 N -0.947 5.947 19 Si 0.980 3.020 20 H -0.280 1.280 21 H -0.288 1.288 22 H -0.277 1.277 23 C 0.159 3.841 24 C 0.095 3.905 25 H 0.093 0.907 26 O -0.563 6.563 27 H 0.065 0.935 28 H 0.036 0.964 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.100 0.900 32 H 0.048 0.952 33 H 0.088 0.912 34 H 0.059 0.941 35 H 0.113 0.887 36 H 0.104 0.896 37 H 0.422 0.578 38 H 0.027 0.973 39 H 0.024 0.976 40 H 0.250 0.750 41 H 0.024 0.976 42 H 0.028 0.972 43 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.254 -11.366 21.261 24.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C 0.019 3.981 4 H 0.103 0.897 5 C -0.233 4.233 6 O -0.309 6.309 7 C -0.027 4.027 8 C 0.292 3.708 9 O -0.456 6.456 10 N -0.347 5.347 11 C 0.045 3.955 12 H 0.105 0.895 13 C 0.005 3.995 14 N -0.349 5.349 15 C -0.379 4.379 16 H 0.093 0.907 17 C -0.253 4.253 18 N -0.596 5.596 19 Si 0.808 3.192 20 H -0.206 1.206 21 H -0.214 1.214 22 H -0.203 1.203 23 C 0.034 3.966 24 C 0.035 3.965 25 H 0.111 0.889 26 O -0.371 6.371 27 H 0.084 0.916 28 H 0.056 0.944 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.118 0.882 32 H 0.067 0.933 33 H 0.107 0.893 34 H 0.078 0.922 35 H 0.130 0.870 36 H 0.122 0.878 37 H 0.260 0.740 38 H 0.045 0.955 39 H 0.042 0.958 40 H 0.059 0.941 41 H 0.042 0.958 42 H 0.046 0.954 43 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 0.515 -12.362 20.307 23.780 hybrid contribution 0.096 1.356 -1.052 1.719 sum 0.611 -11.007 19.255 22.188 Atomic orbital electron populations 1.21726 0.95561 1.01960 1.01614 1.21670 0.96506 0.94595 1.03034 1.22477 0.95008 0.94373 0.86226 0.89678 1.22315 0.95372 1.02694 1.02913 1.88047 1.89807 1.18763 1.34240 1.22281 1.03686 0.83630 0.93097 1.21136 0.76303 0.82000 0.91345 1.90719 1.52591 1.59931 1.42311 1.45466 1.69620 1.07827 1.11790 1.21900 0.95671 0.93152 0.84734 0.89465 1.21890 0.95398 0.90544 0.91690 1.44562 1.29069 1.41136 1.20134 1.19381 1.07314 1.15861 0.95348 0.90681 1.25613 0.98497 0.98800 1.02374 1.70098 1.22462 1.27797 1.39227 0.85134 0.77592 0.77388 0.79090 1.20582 1.21397 1.20337 1.21731 0.88476 0.95349 0.91090 1.23093 0.96778 0.90128 0.86521 0.88945 1.86198 1.65226 1.36675 1.49035 0.91599 0.94445 0.92045 0.92760 0.88203 0.93306 0.89349 0.92193 0.86958 0.87838 0.73993 0.95503 0.95751 0.94056 0.95784 0.95364 0.74982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.81 71.98 0.71 -1.69 16 2 C -0.12 -1.83 5.64 30.59 0.17 -1.66 16 3 C 0.08 1.23 2.72 30.59 0.08 1.31 16 4 H 0.09 0.95 7.79 -2.39 -0.02 0.93 16 5 C -0.18 -2.49 9.53 71.98 0.69 -1.80 16 6 O -0.39 -9.69 9.06 -129.94 -1.18 -10.87 16 7 C 0.05 1.07 6.23 71.24 0.44 1.51 16 8 C 0.50 15.57 7.91 87.66 0.69 16.26 16 9 O -0.58 -24.29 16.19 16.00 0.26 -24.03 16 10 N -0.69 -20.01 5.18 -435.96 -2.26 -22.27 16 11 C 0.15 5.67 3.25 46.38 0.15 5.82 16 12 H 0.09 3.58 7.63 -2.39 -0.02 3.57 16 13 C 0.13 6.00 6.93 86.84 0.60 6.60 16 14 N -0.62 -33.27 3.40 -691.85 -2.35 -35.62 16 15 C -0.25 -14.63 10.28 84.04 0.86 -13.77 16 16 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 17 C -0.06 -3.43 5.49 84.86 0.47 -2.96 16 18 N -0.95 -56.21 10.31 21.65 0.22 -55.99 16 19 Si 0.98 46.50 29.55 68.60 2.03 48.52 16 20 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 21 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 22 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 23 C 0.16 7.60 5.14 86.73 0.45 8.04 16 24 C 0.10 3.27 4.19 31.78 0.13 3.40 16 25 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 26 O -0.56 -15.94 12.14 -148.98 -1.81 -17.75 16 27 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.04 0.80 7.82 -2.39 -0.02 0.78 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.05 1.01 8.14 -2.39 -0.02 1.00 16 31 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.06 0.82 7.87 -2.38 -0.02 0.80 16 35 H 0.11 1.50 8.08 -2.39 -0.02 1.48 16 36 H 0.10 1.58 7.87 -2.39 -0.02 1.56 16 37 H 0.42 9.61 7.56 -92.71 -0.70 8.91 16 38 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 39 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 41 H 0.02 1.28 7.38 -2.39 -0.02 1.27 16 42 H 0.03 1.47 7.44 -2.38 -0.02 1.45 16 43 H 0.40 8.31 9.12 -74.06 -0.68 7.64 16 Total: -1.00 -77.46 352.24 -0.01 -77.47 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -0.37 Total: 19.46 kcal Atomic # 6 Polarization: 15.63 SS G_CDS: 5.44 Total: 21.07 kcal Atomic # 7 Polarization: -109.49 SS G_CDS: -4.38 Total: -113.87 kcal Atomic # 8 Polarization: -49.93 SS G_CDS: -2.73 Total: -52.65 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.52 kcal Total: -77.46 -0.01 -77.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219476098.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.829 kcal (2) G-P(sol) polarization free energy of solvation -77.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds