Wall clock time and date at job start Tue Mar 31 2020 03:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99862 * 2 1 4 4 H 1.48506 * 109.46993 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47464 * 299.99822 * 3 2 1 6 6 H 1.48496 * 109.47378 * 60.00347 * 3 2 1 7 7 C 1.38810 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00069 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99650 * 0.02562 * 7 2 1 10 10 C 1.47290 * 125.79079 * 180.02562 * 9 7 2 11 11 C 1.54325 * 107.30599 * 178.92205 * 10 9 7 12 12 H 1.08997 * 110.72163 * 96.18354 * 11 10 9 13 13 N 1.46497 * 110.72131 * 219.45483 * 11 10 9 14 14 C 1.34781 * 119.99953 * 268.52482 * 13 11 10 15 15 O 1.21281 * 120.00226 * 359.97438 * 14 13 11 16 16 C 1.50698 * 119.99963 * 180.02562 * 14 13 11 17 17 C 1.52996 * 109.47270 * 179.97438 * 16 14 13 18 18 N 1.46503 * 109.47570 * 179.97438 * 17 16 14 19 19 C 1.34771 * 120.00215 * 179.97438 * 18 17 16 20 20 N 1.34774 * 120.00044 * 180.02562 * 19 18 17 21 21 O 1.21592 * 120.00147 * 359.97438 * 19 18 17 22 22 C 1.55154 * 102.94303 * 337.81911 * 11 10 9 23 23 H 1.08999 * 111.00564 * 153.57779 * 22 11 10 24 24 O 1.42902 * 111.03861 * 277.41104 * 22 11 10 25 25 C 1.47425 * 125.65179 * 0.02562 * 9 7 2 26 26 H 0.97001 * 119.99611 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.85762 * 59.49821 * 10 9 7 28 28 H 1.08995 * 110.00297 * 298.42768 * 10 9 7 29 29 H 0.96996 * 120.00123 * 88.52155 * 13 11 10 30 30 H 1.09005 * 109.47068 * 299.99881 * 16 14 13 31 31 H 1.09005 * 109.47143 * 59.99839 * 16 14 13 32 32 H 1.09005 * 109.47029 * 299.99968 * 17 16 14 33 33 H 1.09006 * 109.47279 * 59.99360 * 17 16 14 34 34 H 0.97000 * 119.99278 * 359.97438 * 18 17 16 35 35 H 0.96996 * 119.99984 * 359.97438 * 20 19 18 36 36 H 0.97007 * 120.00249 * 179.97438 * 20 19 18 37 37 H 0.96700 * 114.00230 * 173.66633 * 24 22 11 38 38 H 1.09002 * 110.36696 * 85.26297 * 25 9 7 39 39 H 1.08995 * 110.36608 * 323.05133 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0016 10 6 1.9294 -3.7314 -0.0017 11 6 0.7740 -4.7541 0.0246 12 1 0.5415 -5.0993 -0.9827 13 7 1.1014 -5.8836 0.8983 14 6 1.7020 -6.9775 0.3892 15 8 1.9711 -7.0270 -0.7924 16 6 2.0382 -8.1395 1.2878 17 6 2.7079 -9.2427 0.4661 18 7 3.0353 -10.3722 1.3397 19 6 3.6351 -11.4664 0.8304 20 7 3.9358 -12.5056 1.6341 21 8 3.9041 -11.5163 -0.3543 22 6 -0.4048 -3.9318 0.6089 23 1 -1.3627 -4.3304 0.2749 24 8 -0.3414 -3.8869 2.0358 25 6 -0.1416 -2.5331 -0.0028 26 1 -0.4849 0.8401 -0.0004 27 1 2.5552 -3.8562 0.8821 28 1 2.5277 -3.8711 -0.9020 29 1 0.8859 -5.8441 1.8433 30 1 2.7178 -7.8072 2.0726 31 1 1.1243 -8.5266 1.7385 32 1 2.0280 -9.5749 -0.3185 33 1 3.6217 -8.8559 0.0149 34 1 2.8204 -10.3324 2.2848 35 1 3.7210 -12.4659 2.5792 36 1 4.3672 -13.2934 1.2675 37 1 -0.9996 -3.3056 2.4407 38 1 -0.5266 -2.4860 -1.0215 39 1 -0.5999 -1.7581 0.6114 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220935719.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:41 Heat of formation + Delta-G solvation = -123.962720 kcal Electronic energy + Delta-G solvation = -22573.253325 eV Core-core repulsion = 18936.214293 eV Total energy + Delta-G solvation = -3637.039032 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 286.147 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.18406 -40.68844 -39.41163 -36.33004 -36.20808 -35.42369 -34.63073 -33.61025 -31.65524 -30.17772 -28.68618 -26.53555 -24.87126 -22.42401 -22.20454 -21.73281 -21.20866 -19.41364 -19.09237 -18.38666 -18.07080 -17.75791 -17.00573 -16.88656 -16.65380 -16.10777 -15.86738 -15.72217 -15.21205 -15.13888 -14.64755 -14.56502 -14.35856 -14.17981 -13.51985 -13.21073 -12.94861 -12.87382 -12.76326 -12.45959 -12.24560 -12.08806 -11.90646 -11.81057 -11.56247 -10.99315 -10.84303 -10.73524 -10.72640 -10.08460 -9.97483 -8.91082 -7.81619 -5.24867 1.46321 1.47173 1.57329 1.63772 1.75501 2.17499 2.32968 2.49857 3.22914 3.29713 3.57044 3.67751 3.76983 3.87808 3.94957 4.06879 4.14042 4.32775 4.50030 4.57431 4.75394 4.86774 4.89695 4.96082 5.02224 5.34486 5.42752 5.45899 5.51802 5.70885 5.92416 6.05465 6.24863 6.63160 6.90775 7.08109 7.14555 7.30924 7.67630 7.72228 8.35257 9.20569 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.035110 B = 0.002871 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.298034 B = 9750.750038 C =10124.667100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.061 4.061 3 Si 0.980 3.020 4 H -0.273 1.273 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.239 4.239 8 H 0.073 0.927 9 N -0.617 5.617 10 C 0.130 3.870 11 C 0.152 3.848 12 H 0.093 0.907 13 N -0.695 5.695 14 C 0.509 3.491 15 O -0.590 6.590 16 C -0.132 4.132 17 C 0.157 3.843 18 N -0.727 5.727 19 C 0.695 3.305 20 N -0.844 5.844 21 O -0.653 6.653 22 C 0.092 3.908 23 H 0.092 0.908 24 O -0.561 6.561 25 C 0.124 3.876 26 H 0.250 0.750 27 H 0.028 0.972 28 H 0.008 0.992 29 H 0.421 0.579 30 H 0.132 0.868 31 H 0.140 0.860 32 H 0.051 0.949 33 H 0.045 0.955 34 H 0.419 0.581 35 H 0.416 0.584 36 H 0.420 0.580 37 H 0.396 0.604 38 H -0.002 1.002 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.348 -20.830 12.383 24.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.254 4.254 3 Si 0.809 3.191 4 H -0.197 1.197 5 H -0.219 1.219 6 H -0.212 1.212 7 C -0.368 4.368 8 H 0.091 0.909 9 N -0.344 5.344 10 C 0.003 3.997 11 C 0.045 3.955 12 H 0.111 0.889 13 N -0.347 5.347 14 C 0.297 3.703 15 O -0.470 6.470 16 C -0.172 4.172 17 C 0.032 3.968 18 N -0.385 5.385 19 C 0.393 3.607 20 N -0.414 5.414 21 O -0.535 6.535 22 C 0.032 3.968 23 H 0.110 0.890 24 O -0.369 6.369 25 C -0.002 4.002 26 H 0.059 0.941 27 H 0.046 0.954 28 H 0.026 0.974 29 H 0.260 0.740 30 H 0.150 0.850 31 H 0.158 0.842 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.256 0.744 35 H 0.248 0.752 36 H 0.253 0.747 37 H 0.246 0.754 38 H 0.015 0.985 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.454 -20.954 10.494 23.439 hybrid contribution -0.015 1.392 0.505 1.481 sum 0.438 -19.562 10.999 22.446 Atomic orbital electron populations 1.69944 1.05899 1.25153 1.58563 1.25549 0.96762 1.00631 1.02461 0.84980 0.77874 0.79328 0.76933 1.19728 1.21904 1.21241 1.19421 0.90847 0.83748 1.42758 0.90872 1.44633 1.02659 1.00294 1.86770 1.21714 0.95214 0.85446 0.97332 1.21768 0.93655 0.85309 0.94726 0.88863 1.45654 1.60628 1.14959 1.13462 1.21187 0.76246 0.84265 0.88631 1.90746 1.54690 1.82357 1.19199 1.21709 1.05380 0.91693 0.98373 1.20628 0.99258 0.84865 0.92086 1.44741 1.64668 1.15872 1.13217 1.16261 0.78398 0.81364 0.84697 1.42740 1.67221 1.18606 1.12818 1.90975 1.62136 1.82927 1.17470 1.23236 0.96698 0.94915 0.81983 0.89046 1.86156 1.62677 1.70231 1.17825 1.22540 0.84563 0.95371 0.97702 0.94050 0.95413 0.97446 0.74039 0.84983 0.84228 0.93032 0.93610 0.74359 0.75225 0.74724 0.75400 0.98456 0.88986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.36 10.09 21.65 0.22 -54.14 16 2 C -0.06 -3.44 5.49 84.86 0.47 -2.98 16 3 Si 0.98 45.49 29.55 68.60 2.03 47.52 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 6 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 7 C -0.24 -13.59 10.28 84.03 0.86 -12.72 16 8 H 0.07 4.10 7.83 -2.91 -0.02 4.08 16 9 N -0.62 -32.08 3.40 -691.31 -2.35 -34.43 16 10 C 0.13 5.76 7.01 86.68 0.61 6.37 16 11 C 0.15 5.38 3.20 46.18 0.15 5.53 16 12 H 0.09 3.51 7.55 -2.39 -0.02 3.49 16 13 N -0.69 -18.50 5.07 -436.92 -2.22 -20.72 16 14 C 0.51 13.49 7.83 87.66 0.69 14.17 16 15 O -0.59 -21.91 15.63 -3.03 -0.05 -21.96 16 16 C -0.13 -1.89 5.81 29.85 0.17 -1.71 16 17 C 0.16 3.26 4.96 86.38 0.43 3.69 16 18 N -0.73 -10.21 5.56 -478.53 -2.66 -12.87 16 19 C 0.70 13.83 8.84 179.06 1.58 15.41 16 20 N -0.84 -7.47 8.88 -184.75 -1.64 -9.11 16 21 O -0.65 -21.41 17.18 -4.00 -0.07 -21.48 16 22 C 0.09 3.11 4.28 31.99 0.14 3.25 16 23 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 24 O -0.56 -16.62 12.24 -148.98 -1.82 -18.44 16 25 C 0.12 5.77 5.62 86.86 0.49 6.26 16 26 H 0.25 13.85 8.31 -92.71 -0.77 13.08 16 27 H 0.03 1.23 8.03 -2.38 -0.02 1.21 16 28 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.42 9.08 7.59 -92.71 -0.70 8.37 16 30 H 0.13 1.17 8.14 -2.38 -0.02 1.16 16 31 H 0.14 0.99 8.14 -2.38 -0.02 0.97 16 32 H 0.05 1.34 8.10 -2.38 -0.02 1.32 16 33 H 0.05 1.25 8.10 -2.38 -0.02 1.23 16 34 H 0.42 1.94 8.49 -92.71 -0.79 1.15 16 35 H 0.42 0.32 8.84 -92.71 -0.82 -0.50 16 36 H 0.42 3.27 8.93 -92.70 -0.83 2.44 16 37 H 0.40 9.48 9.11 -74.06 -0.67 8.80 16 38 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 39 H 0.09 4.73 5.86 -2.39 -0.01 4.72 16 Total: -1.00 -85.03 329.71 -5.66 -90.69 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: -2.67 Total: 17.67 kcal Atomic # 6 Polarization: 31.68 SS G_CDS: 5.58 Total: 37.27 kcal Atomic # 7 Polarization: -122.62 SS G_CDS: -8.65 Total: -131.28 kcal Atomic # 8 Polarization: -59.93 SS G_CDS: -1.94 Total: -61.87 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -85.03 -5.66 -90.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220935719.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.271 kcal (2) G-P(sol) polarization free energy of solvation -85.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds