Wall clock time and date at job start Tue Mar 31 2020 03:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99975 * 2 1 4 4 H 1.48498 * 109.47228 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46804 * 299.99737 * 3 2 1 6 6 H 1.48496 * 109.47017 * 59.99817 * 3 2 1 7 7 C 1.37880 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00147 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99975 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47110 * 180.02562 * 9 7 2 11 11 C 1.34778 * 119.99672 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00671 * 0.02562 * 11 10 9 13 13 C 1.50708 * 119.99655 * 180.02562 * 11 10 9 14 14 N 1.46902 * 109.46867 * 180.02562 * 13 11 10 15 15 C 1.46895 * 111.00225 * 66.04448 * 14 13 11 16 16 C 1.53001 * 109.47106 * 193.95053 * 15 14 13 17 17 O 1.42895 * 109.46997 * 65.00463 * 16 15 14 18 18 C 1.46905 * 110.99784 * 190.00337 * 14 13 11 19 19 C 1.53175 * 109.53865 * 306.48733 * 18 14 13 20 20 C 1.53092 * 109.16179 * 176.85125 * 19 18 14 21 21 O 1.42910 * 109.41107 * 302.39040 * 20 19 18 22 22 C 1.42900 * 114.09727 * 61.16189 * 21 20 19 23 23 C 1.53090 * 109.41229 * 298.83586 * 22 21 20 24 24 H 0.96997 * 120.00171 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47016 * 59.99922 * 9 7 2 26 26 H 1.08996 * 109.47414 * 300.00511 * 9 7 2 27 27 H 0.96997 * 120.00101 * 0.02562 * 10 9 7 28 28 H 1.08991 * 109.47097 * 60.00444 * 13 11 10 29 29 H 1.09001 * 109.47169 * 300.00126 * 13 11 10 30 30 H 1.08993 * 109.47484 * 313.95742 * 15 14 13 31 31 H 1.09005 * 109.47200 * 73.95694 * 15 14 13 32 32 H 1.09002 * 109.47047 * 184.99876 * 16 15 14 33 33 H 1.08994 * 109.47418 * 305.00192 * 16 15 14 34 34 H 0.96703 * 114.00337 * 179.97438 * 17 16 15 35 35 H 1.08997 * 109.61151 * 186.27106 * 18 14 13 36 36 H 1.09006 * 109.52647 * 296.75425 * 19 18 14 37 37 H 1.08998 * 109.52537 * 56.94317 * 19 18 14 38 38 H 1.08998 * 109.48147 * 182.40843 * 20 19 18 39 39 H 1.08997 * 109.48550 * 62.37144 * 20 19 18 40 40 H 1.09003 * 109.47953 * 178.86010 * 22 21 20 41 41 H 1.08995 * 109.49265 * 58.82602 * 22 21 20 42 42 H 1.09001 * 109.52724 * 297.70937 * 23 22 21 43 43 H 1.09000 * 109.52338 * 177.51272 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2032 -3.6126 0.0027 11 6 1.7539 -4.8833 0.0044 12 8 0.5615 -5.1050 0.0046 13 6 2.7333 -6.0288 0.0060 14 7 1.9987 -7.3010 0.0070 15 6 1.2538 -7.4798 -1.2464 16 6 0.2426 -8.6161 -1.0810 17 8 -0.7367 -8.2445 -0.1090 18 6 2.9051 -8.4319 0.2468 19 6 4.0593 -8.3857 -0.7592 20 6 5.0393 -9.5210 -0.4522 21 8 5.5076 -9.3937 0.8920 22 6 4.4776 -9.4771 1.8790 23 6 3.4751 -8.3400 1.6656 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5575 -0.8880 26 1 0.6248 -2.5563 0.8919 27 1 3.1568 -3.4354 0.0029 28 1 3.3597 -5.9699 0.8959 29 1 3.3600 -5.9722 -0.8840 30 1 0.7272 -6.5574 -1.4909 31 1 1.9482 -7.7256 -2.0499 32 1 -0.2475 -8.8081 -2.0355 33 1 0.7593 -9.5170 -0.7502 34 1 -1.4117 -8.9191 0.0471 35 1 2.3595 -9.3686 0.1329 36 1 3.6673 -8.5061 -1.7692 37 1 4.5742 -7.4284 -0.6792 38 1 5.8846 -9.4671 -1.1382 39 1 4.5344 -10.4795 -0.5719 40 1 4.9182 -9.3915 2.8724 41 1 3.9652 -10.4350 1.7900 42 1 3.9781 -7.3817 1.7946 43 1 2.6651 -8.4277 2.3898 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325985065.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:39 Heat of formation + Delta-G solvation = -154.882644 kcal Electronic energy + Delta-G solvation = -23717.762595 eV Core-core repulsion = 20182.923118 eV Total energy + Delta-G solvation = -3534.839477 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.30791 -40.06651 -38.35292 -36.95345 -36.05308 -34.33039 -32.95062 -32.02562 -31.05981 -29.30276 -27.32583 -25.12138 -24.56706 -24.26061 -22.45760 -21.64580 -20.35119 -18.93723 -18.37580 -17.71469 -17.43357 -17.11058 -16.88179 -16.58768 -16.40765 -15.83067 -15.69281 -15.46541 -15.15064 -14.60161 -14.54263 -14.41576 -14.12692 -13.99409 -13.78863 -13.69128 -13.09334 -12.90459 -12.79060 -12.61533 -12.40100 -12.21822 -12.00552 -11.85864 -11.71869 -11.45632 -11.17250 -10.82745 -10.80591 -10.54742 -10.51896 -9.77391 -9.13118 -8.29333 -6.46224 1.42457 1.43956 1.57470 1.83742 2.27311 2.45686 2.95786 3.04728 3.05399 3.48980 3.73718 3.81762 3.96585 4.04871 4.11515 4.15202 4.25416 4.31345 4.40239 4.41344 4.51761 4.54989 4.61003 4.71812 4.80234 4.83192 4.92454 5.00637 5.11777 5.11997 5.20839 5.24588 5.27143 5.50257 5.71720 5.85511 5.97123 6.18903 6.30404 6.65632 6.97790 7.09280 7.23793 7.57438 8.83246 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.019671 B = 0.003723 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.068757 B = 7519.195494 C = 8482.292621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.986 3.014 4 H -0.253 1.253 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.555 4.555 8 H 0.084 0.916 9 C 0.270 3.730 10 N -0.713 5.713 11 C 0.489 3.511 12 O -0.573 6.573 13 C 0.048 3.952 14 N -0.519 5.519 15 C 0.044 3.956 16 C 0.087 3.913 17 O -0.581 6.581 18 C 0.085 3.915 19 C -0.190 4.190 20 C 0.066 3.934 21 O -0.402 6.402 22 C 0.066 3.934 23 C -0.148 4.148 24 H 0.269 0.731 25 H -0.015 1.015 26 H -0.017 1.017 27 H 0.406 0.594 28 H 0.117 0.883 29 H 0.083 0.917 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.384 0.616 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.104 0.896 39 H 0.064 0.936 40 H 0.105 0.895 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.065 -22.765 -1.702 25.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.809 3.191 4 H -0.176 1.176 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.593 4.593 8 H 0.102 0.898 9 C 0.147 3.853 10 N -0.364 5.364 11 C 0.276 3.724 12 O -0.453 6.453 13 C -0.083 4.083 14 N -0.242 5.242 15 C -0.084 4.084 16 C 0.009 3.991 17 O -0.387 6.387 18 C -0.023 4.023 19 C -0.230 4.230 20 C -0.011 4.011 21 O -0.322 6.322 22 C -0.011 4.011 23 C -0.186 4.186 24 H 0.077 0.923 25 H 0.002 0.998 26 H 0.001 0.999 27 H 0.241 0.759 28 H 0.135 0.865 29 H 0.100 0.900 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.232 0.768 35 H 0.113 0.887 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.122 0.878 39 H 0.082 0.918 40 H 0.123 0.877 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 10.253 -22.218 -1.258 24.502 hybrid contribution -0.062 0.767 -0.735 1.064 sum 10.191 -21.451 -1.993 23.832 Atomic orbital electron populations 1.70154 1.08339 1.28489 1.50077 1.26091 0.95770 1.03967 0.93833 0.85094 0.79074 0.77225 0.77709 1.17601 1.20374 1.20430 1.21655 0.94285 0.90588 1.52752 0.89838 1.18468 0.88646 0.84419 0.93742 1.46200 1.10978 1.05564 1.73660 1.21395 0.90164 0.84728 0.76143 1.90685 1.18950 1.85019 1.50596 1.21951 0.94003 0.87911 1.04435 1.61709 1.26238 1.00406 1.35893 1.22300 0.95619 1.00094 0.90344 1.22201 0.89516 0.95846 0.91515 1.86779 1.42325 1.47189 1.62409 1.21900 0.91241 0.94014 0.95137 1.22928 0.98037 1.01219 1.00783 1.22599 0.98221 0.96913 0.83337 1.87920 1.34295 1.94030 1.15913 1.22642 0.88823 0.97064 0.92582 1.22269 0.99365 1.00329 0.96647 0.92264 0.99751 0.99928 0.75899 0.86480 0.89952 0.92593 0.91428 0.92316 0.91904 0.76821 0.88687 0.89780 0.91160 0.87811 0.91786 0.87741 0.91764 0.91737 0.90606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.47 13.29 21.45 0.28 -57.19 16 2 C 0.00 0.16 5.46 84.66 0.46 0.62 16 3 Si 0.99 43.04 29.54 68.60 2.03 45.07 16 4 H -0.25 -10.16 7.11 99.48 0.71 -9.46 16 5 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 6 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.56 -30.96 9.28 25.60 0.24 -30.72 16 8 H 0.08 4.21 7.60 -2.91 -0.02 4.19 16 9 C 0.27 15.40 5.43 85.63 0.46 15.86 16 10 N -0.71 -31.46 5.55 -466.79 -2.59 -34.05 16 11 C 0.49 20.64 7.41 87.66 0.65 21.29 16 12 O -0.57 -30.02 14.45 -3.03 -0.04 -30.07 16 13 C 0.05 1.38 4.39 85.56 0.38 1.76 16 14 N -0.52 -14.28 4.11 -874.82 -3.60 -17.88 16 15 C 0.04 1.21 4.83 86.30 0.42 1.63 16 16 C 0.09 1.99 7.18 71.98 0.52 2.51 16 17 O -0.58 -17.21 13.61 -148.98 -2.03 -19.23 16 18 C 0.08 1.63 2.17 45.03 0.10 1.73 16 19 C -0.19 -2.97 4.72 30.68 0.14 -2.82 16 20 C 0.07 0.90 6.84 72.01 0.49 1.39 16 21 O -0.40 -7.27 10.77 -148.98 -1.60 -8.87 16 22 C 0.07 0.99 6.84 72.01 0.49 1.48 16 23 C -0.15 -2.79 5.43 30.68 0.17 -2.62 16 24 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 25 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 26 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 27 H 0.41 14.80 8.32 -92.71 -0.77 14.03 16 28 H 0.12 3.00 6.04 -2.39 -0.01 2.99 16 29 H 0.08 1.99 6.76 -2.39 -0.02 1.97 16 30 H 0.06 2.11 5.79 -2.39 -0.01 2.10 16 31 H 0.07 1.44 6.38 -2.38 -0.02 1.42 16 32 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.06 1.08 6.35 -2.39 -0.02 1.06 16 34 H 0.38 7.14 9.12 -74.06 -0.68 6.46 16 35 H 0.10 1.64 6.22 -2.39 -0.01 1.62 16 36 H 0.08 1.15 6.67 -2.38 -0.02 1.14 16 37 H 0.07 1.23 6.38 -2.39 -0.02 1.21 16 38 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.06 1.34 6.25 -2.39 -0.01 1.32 16 43 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -80.03 337.95 -3.44 -83.48 By element: Atomic # 1 Polarization: 27.06 SS G_CDS: -0.41 Total: 26.65 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: 4.52 Total: 12.10 kcal Atomic # 7 Polarization: -103.21 SS G_CDS: -5.90 Total: -109.12 kcal Atomic # 8 Polarization: -54.50 SS G_CDS: -3.67 Total: -58.17 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -80.03 -3.44 -83.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325985065.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.407 kcal (2) G-P(sol) polarization free energy of solvation -80.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds