Wall clock time and date at job start Tue Mar 31 2020 03:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34634 * 117.00519 * 2 1 4 4 O 1.21512 * 119.99922 * 0.02562 * 3 2 1 5 5 N 1.34777 * 120.00247 * 180.02562 * 3 2 1 6 6 C 1.46506 * 119.99873 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.46684 * 179.97438 * 6 5 3 8 8 C 1.50706 * 109.46573 * 179.97438 * 7 6 5 9 9 O 1.21274 * 120.00042 * 359.72068 * 8 7 6 10 10 N 1.34777 * 119.99766 * 179.97438 * 8 7 6 11 11 C 1.47030 * 125.64636 * 0.02997 * 10 8 7 12 12 C 1.54323 * 107.26779 * 181.02120 * 11 10 8 13 13 C 1.55157 * 102.94782 * 22.18684 * 12 11 10 14 14 O 1.42898 * 110.99946 * 82.56991 * 13 12 11 15 15 C 1.50688 * 111.00989 * 206.42514 * 13 12 11 16 16 H 1.08001 * 120.00273 * 118.54668 * 15 13 12 17 17 C 1.37883 * 120.00194 * 298.55163 * 15 13 12 18 18 N 1.31518 * 119.99611 * 359.97438 * 17 15 13 19 19 Si 1.86797 * 120.00057 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47393 * 59.99617 * 19 17 15 21 21 H 1.48506 * 109.46841 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47088 * 299.99388 * 19 17 15 23 23 C 1.47423 * 125.65100 * 179.71255 * 10 8 7 24 24 H 1.08995 * 109.47626 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46835 * 300.00085 * 1 2 3 26 26 H 1.08998 * 109.46979 * 59.99455 * 1 2 3 27 27 H 0.96999 * 120.00047 * 359.97438 * 5 3 2 28 28 H 1.09000 * 109.47212 * 59.99645 * 6 5 3 29 29 H 1.09001 * 109.46577 * 299.99570 * 6 5 3 30 30 H 1.09000 * 109.47486 * 59.99935 * 7 6 5 31 31 H 1.09001 * 109.47362 * 299.99212 * 7 6 5 32 32 H 1.08994 * 109.88106 * 300.43066 * 11 10 8 33 33 H 1.08991 * 109.88401 * 61.44691 * 11 10 8 34 34 H 1.08997 * 110.72122 * 140.55887 * 12 11 10 35 35 H 1.09005 * 110.71823 * 263.82555 * 12 11 10 36 36 H 0.96697 * 114.00047 * 61.46062 * 14 13 12 37 37 H 0.96999 * 119.99889 * 180.02562 * 18 17 15 38 38 H 1.08997 * 110.36971 * 274.75260 * 23 10 8 39 39 H 1.09002 * 110.36287 * 37.07212 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1995 0.0000 4 8 1.4016 2.2187 0.0005 5 7 3.4093 1.2700 -0.0005 6 6 4.0744 2.5754 0.0000 7 6 5.5912 2.3748 -0.0001 8 6 6.2754 3.7176 -0.0001 9 8 5.6149 4.7346 -0.0052 10 7 7.6213 3.7880 0.0003 11 6 8.5395 2.6397 0.0002 12 6 9.9764 3.2020 0.0270 13 6 9.7816 4.6259 0.6117 14 8 9.7121 4.5886 2.0385 15 6 10.8757 5.5537 0.1504 16 1 10.6316 6.4269 -0.4365 17 6 12.1885 5.2879 0.4773 18 7 12.4857 4.2248 1.1923 19 14 13.5447 6.4384 -0.0940 20 1 13.3059 7.7969 0.4563 21 1 14.8565 5.9340 0.3858 22 1 13.5499 6.4992 -1.5777 23 6 8.4168 5.0292 -0.0057 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 3.9375 0.4565 -0.0005 28 1 3.7819 3.1319 0.8905 29 1 3.7812 3.1329 -0.8895 30 1 5.8841 1.8181 -0.8903 31 1 5.8841 1.8174 0.8897 32 1 8.3652 2.0257 0.8837 33 1 8.3886 2.0445 -0.9003 34 1 10.6132 2.6020 0.6770 35 1 10.3898 3.2520 -0.9803 36 1 10.5118 4.2482 2.4624 37 1 13.4093 4.0380 1.4227 38 1 8.5508 5.3890 -1.0258 39 1 7.9346 5.7917 0.6061 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326384253.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:20 Heat of formation + Delta-G solvation = -166.611835 kcal Electronic energy + Delta-G solvation = -22620.183270 eV Core-core repulsion = 18949.002083 eV Total energy + Delta-G solvation = -3671.181187 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 286.141 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.59148 -39.60960 -37.54378 -36.87313 -35.26291 -34.35273 -32.27227 -31.35550 -29.71679 -28.40198 -27.69530 -25.45629 -23.76112 -22.16071 -21.48748 -19.87680 -19.28024 -18.40309 -17.39203 -17.13161 -16.82481 -16.50129 -15.80642 -15.07281 -14.98025 -14.82995 -14.52329 -14.23871 -14.02715 -13.69890 -13.20960 -12.97732 -12.37247 -12.31485 -12.11242 -11.96296 -11.84314 -11.51926 -11.38464 -11.35239 -10.99122 -10.91566 -10.80962 -10.68521 -10.53501 -10.08667 -9.55290 -9.40799 -9.39009 -8.72608 -8.28594 -8.07968 -6.33093 -4.41146 1.95203 2.65004 2.95305 3.19087 3.24110 3.27181 3.45108 4.08447 4.23390 4.63782 4.84310 4.88848 4.94559 4.96643 4.97689 5.21727 5.33985 5.48152 5.63666 5.72436 5.76870 5.80797 5.94559 6.07074 6.13704 6.22026 6.37476 6.58734 6.82274 6.88252 7.17335 7.23500 7.28265 7.68624 7.96191 8.04188 8.13419 8.51497 8.61705 9.25543 9.34348 10.74300 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.054344 B = 0.002770 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.117086 B =10105.966056 C =10330.597488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.375 6.375 3 C 0.645 3.355 4 O -0.569 6.569 5 N -0.709 5.709 6 C 0.152 3.848 7 C -0.149 4.149 8 C 0.527 3.473 9 O -0.551 6.551 10 N -0.605 5.605 11 C 0.097 3.903 12 C -0.137 4.137 13 C 0.248 3.752 14 O -0.582 6.582 15 C -0.536 4.536 16 H 0.064 0.936 17 C 0.073 3.927 18 N -0.896 5.896 19 Si 0.903 3.097 20 H -0.274 1.274 21 H -0.286 1.286 22 H -0.275 1.275 23 C 0.119 3.881 24 H 0.102 0.898 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.407 0.593 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.381 0.619 37 H 0.269 0.731 38 H 0.073 0.927 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.772 -11.926 -2.683 17.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.289 6.289 3 C 0.397 3.603 4 O -0.457 6.457 5 N -0.368 5.368 6 C 0.030 3.970 7 C -0.189 4.189 8 C 0.315 3.685 9 O -0.431 6.431 10 N -0.338 5.338 11 C -0.026 4.026 12 C -0.175 4.175 13 C 0.207 3.793 14 O -0.391 6.391 15 C -0.574 4.574 16 H 0.083 0.917 17 C -0.130 4.130 18 N -0.535 5.535 19 Si 0.731 3.269 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.200 1.200 23 C -0.002 4.002 24 H 0.120 0.880 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.241 0.759 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.117 0.883 31 H 0.119 0.881 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.230 0.770 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.044 -10.760 -2.722 17.900 hybrid contribution 1.613 -0.185 -0.204 1.637 sum -12.431 -10.945 -2.925 16.819 Atomic orbital electron populations 1.23186 0.74375 1.03384 1.02827 1.86228 1.24252 1.31202 1.87228 1.18106 0.83437 0.82166 0.76583 1.91033 1.64572 1.34843 1.55234 1.44669 1.03063 1.10832 1.78278 1.21081 0.89547 0.81814 1.04600 1.21757 0.94625 0.97346 1.05204 1.19719 0.81204 0.90420 0.77192 1.90710 1.63867 1.37071 1.51409 1.48610 1.04402 1.09872 1.70879 1.22224 0.92177 0.88435 0.99725 1.23186 0.91608 1.00222 1.02521 1.19644 0.89535 0.90789 0.79300 1.86140 1.43803 1.88585 1.20553 1.21401 0.91061 1.10268 1.34706 0.91747 1.24987 0.98791 0.95100 0.94087 1.69703 1.19925 1.26063 1.37777 0.86468 0.80303 0.81030 0.79143 1.19977 1.21131 1.20041 1.22446 0.91498 0.85937 1.00319 0.88002 0.91809 0.91838 0.75875 0.90016 0.90052 0.88271 0.88144 0.92297 0.92741 0.89451 0.91286 0.76963 0.92154 0.90892 0.91025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.42 10.56 101.05 1.07 1.49 16 2 O -0.38 -3.91 10.61 -40.31 -0.43 -4.33 16 3 C 0.64 8.23 8.75 54.06 0.47 8.70 16 4 O -0.57 -9.30 16.13 -19.28 -0.31 -9.61 16 5 N -0.71 -7.45 5.56 -65.28 -0.36 -7.81 16 6 C 0.15 1.90 4.96 -4.04 -0.02 1.88 16 7 C -0.15 -1.73 5.01 -27.88 -0.14 -1.87 16 8 C 0.53 9.13 7.85 -10.98 -0.09 9.04 16 9 O -0.55 -11.54 16.24 5.56 0.09 -11.45 16 10 N -0.61 -11.17 3.32 -170.38 -0.57 -11.73 16 11 C 0.10 1.59 6.49 -3.06 -0.02 1.57 16 12 C -0.14 -2.76 5.38 -24.90 -0.13 -2.89 16 13 C 0.25 5.74 0.87 -89.51 -0.08 5.66 16 14 O -0.58 -14.30 13.17 -35.23 -0.46 -14.76 16 15 C -0.54 -13.55 8.27 -34.44 -0.28 -13.84 16 16 H 0.06 1.63 7.79 -52.49 -0.41 1.22 16 17 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 18 N -0.90 -22.31 10.76 55.43 0.60 -21.71 16 19 Si 0.90 19.75 29.54 -169.99 -5.02 14.72 16 20 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 21 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 23 C 0.12 2.57 6.09 -2.41 -0.01 2.56 16 24 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.41 3.01 8.58 -40.82 -0.35 2.66 16 28 H 0.08 1.17 8.10 -51.93 -0.42 0.75 16 29 H 0.08 1.14 8.10 -51.93 -0.42 0.72 16 30 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.09 1.85 7.55 -51.93 -0.39 1.46 16 35 H 0.07 1.41 8.03 -51.93 -0.42 1.00 16 36 H 0.38 9.29 7.57 45.56 0.34 9.64 16 37 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 38 H 0.07 1.52 8.03 -51.93 -0.42 1.11 16 39 H 0.07 1.66 8.04 -51.93 -0.42 1.24 16 LS Contribution 333.25 15.07 5.02 5.02 Total: -1.00 -31.04 333.25 -5.77 -36.81 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -4.99 Total: 10.82 kcal Atomic # 6 Polarization: 13.36 SS G_CDS: 0.67 Total: 14.03 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: -0.33 Total: -41.26 kcal Atomic # 8 Polarization: -39.04 SS G_CDS: -1.11 Total: -40.15 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.04 -5.77 -36.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326384253.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.799 kcal (2) G-P(sol) polarization free energy of solvation -31.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds