Wall clock time and date at job start Tue Mar 31 2020 03:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34228 * 116.99711 * 2 1 4 4 O 1.20826 * 120.00141 * 0.26918 * 3 2 1 5 5 C 1.50706 * 119.99909 * 180.02562 * 3 2 1 6 6 N 1.46497 * 109.46973 * 179.97438 * 5 3 2 7 7 C 1.34780 * 119.99610 * 180.02562 * 6 5 3 8 8 O 1.21282 * 120.00106 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99647 * 179.97438 * 7 6 5 10 10 N 1.46904 * 109.46704 * 180.02562 * 9 7 6 11 11 C 1.48528 * 111.00099 * 52.60483 * 10 9 7 12 12 C 1.54941 * 103.22553 * 159.72062 * 11 10 9 13 13 C 1.54603 * 102.92322 * 322.58453 * 12 11 10 14 14 O 1.42898 * 110.30976 * 263.04432 * 13 12 11 15 15 C 1.50694 * 110.30667 * 140.87413 * 13 12 11 16 16 H 1.07999 * 120.00471 * 3.71827 * 15 13 12 17 17 C 1.37878 * 119.99836 * 183.72452 * 15 13 12 18 18 N 1.31507 * 120.00158 * 186.04877 * 17 15 13 19 19 Si 1.86806 * 119.99893 * 6.04322 * 17 15 13 20 20 H 1.48500 * 109.46708 * 84.77793 * 19 17 15 21 21 H 1.48500 * 109.47250 * 204.77563 * 19 17 15 22 22 H 1.48493 * 109.47175 * 324.77737 * 19 17 15 23 23 C 1.47906 * 110.99682 * 170.00250 * 10 9 7 24 24 H 1.08997 * 109.46615 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46915 * 300.00235 * 1 2 3 26 26 H 1.08988 * 109.46971 * 60.00527 * 1 2 3 27 27 H 1.08997 * 109.47211 * 300.00006 * 5 3 2 28 28 H 1.08998 * 109.46709 * 59.99560 * 5 3 2 29 29 H 0.96996 * 120.00195 * 359.97438 * 6 5 3 30 30 H 1.08994 * 109.47260 * 300.00145 * 9 7 6 31 31 H 1.08998 * 109.47190 * 60.00547 * 9 7 6 32 32 H 1.08993 * 110.67078 * 278.15335 * 11 10 9 33 33 H 1.08999 * 110.66754 * 41.29109 * 11 10 9 34 34 H 1.09001 * 110.72073 * 204.22906 * 12 11 10 35 35 H 1.08992 * 110.87836 * 81.01379 * 12 11 10 36 36 H 0.96701 * 113.99940 * 295.71244 * 14 13 12 37 37 H 0.97009 * 120.00573 * 179.97438 * 18 17 15 38 38 H 1.08993 * 109.91734 * 333.50776 * 23 10 9 39 39 H 1.09005 * 109.91336 * 94.60978 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0049 5 6 3.5664 1.2749 -0.0006 6 7 3.9816 2.6798 -0.0011 7 6 5.2921 2.9951 -0.0022 8 8 6.1274 2.1158 -0.0032 9 6 5.7193 4.4403 -0.0033 10 7 7.1863 4.5171 -0.0050 11 6 7.7607 3.7036 -1.1069 12 6 9.1791 4.3008 -1.2863 13 6 8.9490 5.8126 -1.0586 14 8 8.8011 6.4859 -2.3103 15 6 10.0939 6.4040 -0.2774 16 1 10.9437 5.7906 -0.0167 17 6 10.0564 7.7282 0.1048 18 7 11.1038 8.2761 0.6812 19 14 8.5179 8.7440 -0.1963 20 1 7.5618 8.5373 0.9210 21 1 8.8818 10.1815 -0.2767 22 1 7.8872 8.3209 -1.4723 23 6 7.6441 5.9028 -0.2458 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8899 27 1 3.9565 0.7807 0.8891 28 1 3.9557 0.7809 -0.8908 29 1 3.3136 3.3830 -0.0014 30 1 5.3289 4.9339 -0.8932 31 1 5.3302 4.9348 0.8867 32 1 7.8189 2.6537 -0.8200 33 1 7.1751 3.8225 -2.0185 34 1 9.5512 4.1148 -2.2938 35 1 9.8667 3.8990 -0.5423 36 1 9.5924 6.4619 -2.8657 37 1 11.0776 9.2079 0.9498 38 1 6.8906 6.4496 -0.8126 39 1 7.8292 6.4031 0.7048 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329272593.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:18 Heat of formation + Delta-G solvation = -138.553635 kcal Electronic energy + Delta-G solvation = -22968.288093 eV Core-core repulsion = 19298.323601 eV Total energy + Delta-G solvation = -3669.964492 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 286.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.09275 -39.91060 -38.22913 -37.10167 -35.04389 -34.55128 -32.31377 -31.06689 -29.58971 -28.29722 -27.60777 -25.87556 -23.74773 -21.77129 -21.07380 -20.57330 -19.59077 -18.16735 -17.67622 -17.18818 -17.03252 -16.46861 -15.92714 -15.64453 -15.19142 -14.98050 -14.59819 -14.25245 -13.93700 -13.66066 -13.46788 -12.98948 -12.85797 -12.69550 -12.54165 -12.44373 -11.82209 -11.78698 -11.46676 -11.34060 -11.10126 -10.95028 -10.68176 -10.42192 -10.15040 -9.95553 -9.58562 -9.40476 -8.94926 -8.63265 -8.31328 -7.89806 -6.12522 -4.20677 1.62008 1.94814 2.57523 3.01245 3.32565 3.43592 3.62273 4.16304 4.46118 4.50178 4.62373 4.69854 4.71075 4.86412 5.01918 5.04762 5.17606 5.29332 5.41438 5.51615 5.74606 5.77583 5.90214 5.97662 6.07298 6.14110 6.39276 6.63620 6.82385 6.98515 7.11320 7.13498 7.20621 7.42693 7.55576 7.64205 8.13449 8.31060 8.86580 9.02350 9.51841 10.98447 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.035576 B = 0.003324 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.855603 B = 8421.542044 C = 8805.934667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.354 6.354 3 C 0.460 3.540 4 O -0.504 6.504 5 C 0.130 3.870 6 N -0.732 5.732 7 C 0.523 3.477 8 O -0.514 6.514 9 C 0.027 3.973 10 N -0.494 5.494 11 C 0.034 3.966 12 C -0.135 4.135 13 C 0.211 3.789 14 O -0.583 6.583 15 C -0.542 4.542 16 H 0.078 0.922 17 C 0.084 3.916 18 N -0.890 5.890 19 Si 0.870 3.130 20 H -0.283 1.283 21 H -0.298 1.298 22 H -0.231 1.231 23 C 0.043 3.957 24 H 0.105 0.895 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.114 0.886 28 H 0.113 0.887 29 H 0.411 0.589 30 H 0.064 0.936 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.029 0.971 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.365 0.635 37 H 0.265 0.735 38 H 0.037 0.963 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.915 -14.307 -2.664 24.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.270 6.270 3 C 0.302 3.698 4 O -0.391 6.391 5 C 0.004 3.996 6 N -0.391 5.391 7 C 0.310 3.690 8 O -0.388 6.388 9 C -0.104 4.104 10 N -0.219 5.219 11 C -0.093 4.093 12 C -0.174 4.174 13 C 0.171 3.829 14 O -0.389 6.389 15 C -0.580 4.580 16 H 0.096 0.904 17 C -0.120 4.120 18 N -0.527 5.527 19 Si 0.697 3.303 20 H -0.209 1.209 21 H -0.225 1.225 22 H -0.154 1.154 23 C -0.084 4.084 24 H 0.123 0.877 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.132 0.868 28 H 0.130 0.870 29 H 0.248 0.752 30 H 0.082 0.918 31 H 0.123 0.877 32 H 0.118 0.882 33 H 0.047 0.953 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.212 0.788 37 H 0.075 0.925 38 H 0.055 0.945 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -19.899 -14.593 -1.843 24.745 hybrid contribution -1.164 1.277 -0.905 1.950 sum -21.063 -13.316 -2.748 25.070 Atomic orbital electron populations 1.23343 0.75502 1.04089 1.02843 1.86489 1.24016 1.32595 1.83859 1.23653 0.92012 0.81778 0.72319 1.90687 1.66863 1.36297 1.45279 1.20580 0.86479 0.85967 1.06524 1.45829 1.08485 1.06845 1.77980 1.20735 0.80958 0.92128 0.75223 1.90675 1.50528 1.50126 1.47461 1.22243 0.92748 0.92118 1.03329 1.64815 1.03568 1.09103 1.44454 1.23449 0.95365 0.99574 0.90920 1.23084 0.95785 0.97761 1.00749 1.19826 0.92484 0.88243 0.82310 1.86446 1.41584 1.79156 1.31725 1.21364 1.04351 0.96348 1.35890 0.90429 1.25009 0.96170 0.97633 0.93235 1.69941 1.29223 1.13389 1.40142 0.87122 0.84087 0.78379 0.80706 1.20940 1.22549 1.15441 1.23352 0.96650 0.87987 1.00428 0.87698 0.91602 0.91623 0.86817 0.86965 0.75173 0.91780 0.87689 0.88164 0.95310 0.92209 0.90427 0.78813 0.92544 0.94493 0.88943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.19 10.56 101.05 1.07 1.25 16 2 O -0.35 -2.75 10.57 -39.25 -0.41 -3.17 16 3 C 0.46 4.11 8.03 36.01 0.29 4.40 16 4 O -0.50 -5.64 15.42 -18.75 -0.29 -5.93 16 5 C 0.13 1.13 6.27 -5.19 -0.03 1.09 16 6 N -0.73 -7.77 5.53 -61.47 -0.34 -8.11 16 7 C 0.52 7.35 7.54 -10.98 -0.08 7.26 16 8 O -0.51 -8.73 13.52 5.56 0.08 -8.65 16 9 C 0.03 0.41 5.52 -4.97 -0.03 0.38 16 10 N -0.49 -9.71 5.26 -231.89 -1.22 -10.93 16 11 C 0.03 0.65 5.30 -1.90 -0.01 0.64 16 12 C -0.14 -2.82 6.34 -24.86 -0.16 -2.97 16 13 C 0.21 4.97 0.84 -90.41 -0.08 4.90 16 14 O -0.58 -13.27 10.44 -35.23 -0.37 -13.64 16 15 C -0.54 -15.05 8.67 -34.44 -0.30 -15.35 16 16 H 0.08 2.34 7.82 -52.49 -0.41 1.93 16 17 C 0.08 2.40 5.39 -17.82 -0.10 2.30 16 18 N -0.89 -27.03 13.96 55.43 0.77 -26.25 16 19 Si 0.87 21.70 23.85 -169.99 -4.05 17.65 16 20 H -0.28 -6.85 6.94 56.52 0.39 -6.46 16 21 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 22 H -0.23 -5.67 5.42 56.52 0.31 -5.36 16 23 C 0.04 0.96 4.11 -2.75 -0.01 0.95 16 24 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.07 0.34 8.13 -51.93 -0.42 -0.08 16 26 H 0.07 0.34 8.13 -51.94 -0.42 -0.08 16 27 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.41 3.94 7.44 -40.82 -0.30 3.64 16 30 H 0.06 0.90 7.81 -51.93 -0.41 0.49 16 31 H 0.11 1.40 8.14 -51.93 -0.42 0.97 16 32 H 0.10 1.93 5.97 -51.93 -0.31 1.62 16 33 H 0.03 0.53 8.02 -51.93 -0.42 0.11 16 34 H 0.06 1.12 8.08 -51.93 -0.42 0.71 16 35 H 0.08 1.69 7.70 -51.93 -0.40 1.29 16 36 H 0.36 7.28 9.07 45.56 0.41 7.69 16 37 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 38 H 0.04 0.80 6.53 -51.93 -0.34 0.46 16 39 H 0.09 2.23 5.80 -51.93 -0.30 1.93 16 LS Contribution 317.94 15.07 4.79 4.79 Total: -1.00 -34.45 317.94 -5.15 -39.60 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -4.67 Total: 9.79 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: 0.56 Total: 4.85 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: -0.79 Total: -45.29 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -1.00 Total: -31.38 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.05 Total: 17.65 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.45 -5.15 -39.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329272593.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.957 kcal (2) G-P(sol) polarization free energy of solvation -34.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds