Wall clock time and date at job start Tue Mar 31 2020 03:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.47054 * 125.41113 * 2 1 4 4 C 1.54104 * 103.86189 * 180.02562 * 3 2 1 5 5 H 1.09002 * 110.55057 * 118.59254 * 4 3 2 6 6 C 1.50698 * 110.67033 * 241.34662 * 4 3 2 7 7 O 1.21283 * 120.00548 * 97.91349 * 6 4 3 8 8 N 1.34787 * 119.99671 * 277.91437 * 6 4 3 9 9 C 1.46498 * 119.99599 * 180.02562 * 8 6 4 10 10 C 1.52998 * 109.46955 * 179.97438 * 9 8 6 11 11 H 1.09009 * 109.47322 * 59.99899 * 10 9 8 12 12 O 1.42896 * 109.47241 * 300.00117 * 10 9 8 13 13 C 1.53001 * 109.47462 * 179.97438 * 10 9 8 14 14 N 1.46498 * 109.47454 * 185.00077 * 13 10 9 15 15 C 1.36932 * 120.00112 * 179.97438 * 14 13 10 16 16 H 1.08000 * 119.99834 * 359.97438 * 15 14 13 17 17 C 1.38813 * 120.00034 * 180.02562 * 15 14 13 18 18 N 1.31621 * 120.00023 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99897 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.47073 * 90.00550 * 19 17 15 21 21 H 1.48503 * 109.47093 * 210.00378 * 19 17 15 22 22 H 1.48497 * 109.47128 * 330.00033 * 19 17 15 23 23 N 1.47057 * 103.86175 * 359.97438 * 4 3 2 24 24 C 1.33944 * 109.17993 * 0.02562 * 23 4 3 25 25 O 1.21585 * 123.04143 * 180.02562 * 24 23 4 26 26 H 1.08993 * 109.47427 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47362 * 299.98020 * 1 2 3 28 28 H 1.09003 * 109.47239 * 59.97706 * 1 2 3 29 29 H 1.08995 * 110.55082 * 61.40481 * 3 2 1 30 30 H 1.09007 * 110.54786 * 298.59420 * 3 2 1 31 31 H 0.96993 * 119.99887 * 0.02562 * 8 6 4 32 32 H 1.09008 * 109.47325 * 299.99507 * 9 8 6 33 33 H 1.08995 * 109.47300 * 59.99883 * 9 8 6 34 34 H 0.96701 * 114.00124 * 299.99895 * 12 10 9 35 35 H 1.09003 * 109.46741 * 304.99959 * 13 10 9 36 36 H 1.09000 * 109.46925 * 64.99496 * 13 10 9 37 37 H 0.96999 * 119.99591 * 359.97438 * 14 13 10 38 38 H 0.97005 * 119.99647 * 179.97438 * 18 17 15 39 39 H 0.96999 * 125.40959 * 180.02562 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3171 1.1985 0.0000 4 6 3.7504 0.6325 -0.0007 5 1 4.2854 0.9465 -0.8970 6 6 4.4940 1.0656 1.2365 7 8 4.5749 0.3183 2.1883 8 7 5.0691 2.2837 1.2852 9 6 5.7924 2.7045 2.4877 10 6 6.3442 4.1167 2.2828 11 1 5.5202 4.8051 2.0948 12 8 7.2343 4.1228 1.1649 13 6 7.0991 4.5566 3.5388 14 7 7.5247 5.9504 3.3898 15 6 8.2220 6.5647 4.3956 16 1 8.4577 6.0217 5.2989 17 6 8.6248 7.8855 4.2546 18 7 9.2954 8.4758 5.2212 19 14 8.2163 8.8249 2.6925 20 1 6.9043 9.5021 2.8509 21 1 9.2695 9.8399 2.4356 22 1 8.1507 7.8795 1.5493 23 7 3.5537 -0.8249 -0.0003 24 6 2.2411 -1.0917 -0.0002 25 8 1.7945 -2.2226 0.0006 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5135 0.8902 28 1 -0.3634 0.5142 -0.8898 29 1 2.1407 1.7934 0.8961 30 1 2.1406 1.7934 -0.8962 31 1 5.0040 2.8815 0.5242 32 1 5.1135 2.6995 3.3405 33 1 6.6166 2.0164 2.6754 34 1 7.9931 3.5314 1.2631 35 1 6.4447 4.4672 4.4059 36 1 7.9745 3.9221 3.6774 37 1 7.3126 6.4382 2.5786 38 1 9.5772 9.3987 5.1225 39 1 4.2620 -1.4876 -0.0003 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497035007.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:00 Heat of formation + Delta-G solvation = -77.028507 kcal Electronic energy + Delta-G solvation = -22379.647846 eV Core-core repulsion = 18744.644034 eV Total energy + Delta-G solvation = -3635.003811 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 286.147 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.72925 -39.69413 -37.91354 -36.54457 -34.74077 -34.46295 -34.24893 -31.60355 -30.45997 -29.18096 -27.63810 -25.78007 -24.06448 -22.29754 -21.65396 -20.94595 -20.75934 -18.34607 -18.04472 -17.76782 -16.98562 -16.37529 -16.18752 -16.11241 -15.32795 -15.07680 -14.62308 -14.53943 -14.45297 -13.98674 -13.91527 -13.77619 -13.38851 -13.14925 -12.82514 -12.69349 -12.48969 -12.38680 -12.08788 -11.38255 -10.94949 -10.91460 -10.68294 -10.54397 -10.23726 -9.94305 -9.66403 -9.57641 -9.40098 -9.03699 -8.99311 -7.32839 -5.83258 -3.20210 1.98007 2.27405 2.52440 2.91598 3.34151 3.38941 3.42001 3.47077 3.77766 4.14695 4.30344 4.42329 4.53855 4.55271 4.60730 4.82988 4.92895 4.99340 5.09958 5.30619 5.34745 5.44748 5.46303 5.56512 5.66294 5.75442 6.06251 6.21644 6.33248 6.45056 6.68320 7.01915 7.13403 7.64868 7.81517 7.91657 8.21122 8.34941 9.13949 9.85691 10.04758 11.34670 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.038248 B = 0.002715 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.883713 B =10309.933243 C =10556.080341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.637 5.637 3 C 0.106 3.894 4 C 0.105 3.895 5 H 0.118 0.882 6 C 0.499 3.501 7 O -0.522 6.522 8 N -0.715 5.715 9 C 0.089 3.911 10 C 0.085 3.915 11 H 0.106 0.894 12 O -0.556 6.556 13 C 0.131 3.869 14 N -0.749 5.749 15 C -0.250 4.250 16 H 0.090 0.910 17 C 0.006 3.994 18 N -0.932 5.932 19 Si 0.885 3.115 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.273 1.273 23 N -0.715 5.715 24 C 0.705 3.295 25 O -0.582 6.582 26 H 0.087 0.913 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.407 0.593 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.377 0.623 35 H 0.038 0.962 36 H 0.032 0.968 37 H 0.366 0.634 38 H 0.260 0.740 39 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.835 -14.136 -14.998 25.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.377 5.377 3 C -0.018 4.018 4 C -0.006 4.006 5 H 0.136 0.864 6 C 0.282 3.718 7 O -0.397 6.397 8 N -0.368 5.368 9 C -0.035 4.035 10 C 0.025 3.975 11 H 0.124 0.876 12 O -0.362 6.362 13 C 0.003 3.997 14 N -0.396 5.396 15 C -0.380 4.380 16 H 0.107 0.893 17 C -0.190 4.190 18 N -0.580 5.580 19 Si 0.715 3.285 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.199 1.199 23 N -0.376 5.376 24 C 0.405 3.595 25 O -0.460 6.460 26 H 0.106 0.894 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.105 0.895 30 H 0.115 0.885 31 H 0.242 0.758 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.224 0.776 35 H 0.056 0.944 36 H 0.050 0.950 37 H 0.199 0.801 38 H 0.070 0.930 39 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -15.505 -14.785 -14.293 25.755 hybrid contribution 0.631 0.644 -0.993 1.341 sum -14.875 -14.141 -15.286 25.591 Atomic orbital electron populations 1.21446 0.75215 1.04172 1.01522 1.46995 1.06532 1.05518 1.78632 1.22274 0.86118 0.89156 1.04269 1.21839 0.97252 0.83505 0.98019 0.86412 1.20728 0.79792 0.82107 0.89199 1.90780 1.59170 1.52806 1.36959 1.45893 1.54744 1.16787 1.19385 1.22131 0.97074 0.96726 0.87595 1.22457 0.92937 0.93915 0.88161 0.87645 1.86547 1.39103 1.69098 1.41439 1.21175 0.96565 0.87771 0.94234 1.42562 1.68506 1.08742 1.19745 1.19033 1.27401 0.95002 0.96535 0.89258 1.24687 0.99981 0.96780 0.97561 1.69709 1.42892 1.12827 1.32538 0.86529 0.77795 0.79990 0.84195 1.21087 1.21715 1.19863 1.44827 1.07014 1.06100 1.79698 1.15805 0.81676 0.84671 0.77312 1.90968 1.75765 1.20895 1.58371 0.89431 0.91919 0.91872 0.89451 0.88541 0.75798 0.90062 0.90678 0.77588 0.94432 0.95033 0.80104 0.92958 0.72299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 0.74 11.21 59.85 0.67 1.41 16 2 N -0.64 -5.50 3.36 -186.74 -0.63 -6.13 16 3 C 0.11 0.59 7.32 -3.16 -0.02 0.57 16 4 C 0.10 0.68 4.17 -68.20 -0.28 0.40 16 5 H 0.12 0.39 8.14 -51.93 -0.42 -0.04 16 6 C 0.50 4.69 6.95 -10.98 -0.08 4.61 16 7 O -0.52 -7.41 16.58 5.56 0.09 -7.32 16 8 N -0.72 -5.69 5.45 -60.29 -0.33 -6.02 16 9 C 0.09 0.91 5.34 -4.04 -0.02 0.89 16 10 C 0.09 1.04 3.08 -26.73 -0.08 0.96 16 11 H 0.11 1.28 8.14 -51.92 -0.42 0.85 16 12 O -0.56 -6.88 13.03 -35.23 -0.46 -7.34 16 13 C 0.13 2.22 5.90 -4.04 -0.02 2.20 16 14 N -0.75 -16.89 5.35 -59.91 -0.32 -17.21 16 15 C -0.25 -6.91 10.47 -15.06 -0.16 -7.06 16 16 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 17 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 18 N -0.93 -28.89 13.97 55.49 0.78 -28.11 16 19 Si 0.88 21.60 27.74 -169.99 -4.71 16.88 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 22 H -0.27 -6.29 6.52 56.52 0.37 -5.93 16 23 N -0.71 -6.66 5.61 -59.33 -0.33 -7.00 16 24 C 0.70 8.37 8.60 -88.40 -0.76 7.61 16 25 O -0.58 -9.25 17.29 5.29 0.09 -9.16 16 26 H 0.09 0.66 7.52 -51.93 -0.39 0.27 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.09 0.48 7.73 -51.93 -0.40 0.08 16 30 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.41 2.35 8.35 -40.82 -0.34 2.00 16 32 H 0.08 0.89 8.14 -51.92 -0.42 0.47 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.38 3.76 9.05 45.56 0.41 4.17 16 35 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.37 8.16 5.53 -40.82 -0.23 7.93 16 38 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 39 H 0.43 3.73 8.96 -40.82 -0.37 3.36 16 LS Contribution 334.45 15.07 5.04 5.04 Total: -1.00 -38.63 334.45 -6.35 -44.97 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -4.71 Total: 9.73 kcal Atomic # 6 Polarization: 12.51 SS G_CDS: -0.85 Total: 11.66 kcal Atomic # 7 Polarization: -63.64 SS G_CDS: -0.83 Total: -64.47 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.28 Total: -23.82 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.71 Total: 16.88 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -38.63 -6.35 -44.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497035007.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.054 kcal (2) G-P(sol) polarization free energy of solvation -38.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds