Wall clock time and date at job start Tue Mar 31 2020 02:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 119.99550 * 2 1 4 4 H 1.48505 * 109.46906 * 239.99578 * 3 2 1 5 5 H 1.48497 * 109.46959 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47010 * 119.99759 * 3 2 1 7 7 C 1.37875 * 120.00511 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99733 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99736 * 0.02562 * 7 2 1 10 10 N 1.46509 * 109.46791 * 179.97438 * 9 7 2 11 11 C 1.46502 * 119.99858 * 265.11715 * 10 9 7 12 12 C 1.53003 * 109.46984 * 269.17862 * 11 10 9 13 13 N 1.46901 * 109.46926 * 180.02562 * 12 11 10 14 14 C 1.47015 * 111.00055 * 293.63303 * 13 12 11 15 15 C 1.53095 * 109.25976 * 177.61015 * 14 13 12 16 16 O 1.43011 * 109.25760 * 56.84579 * 15 14 13 17 17 C 1.43012 * 113.74351 * 301.33037 * 16 15 14 18 18 C 1.47018 * 110.99693 * 169.99930 * 13 12 11 19 19 C 1.34774 * 119.99742 * 85.12065 * 10 9 7 20 20 O 1.21349 * 119.99575 * 174.69789 * 19 10 9 21 21 C 1.49432 * 120.00152 * 354.96645 * 19 10 9 22 22 O 1.21247 * 120.00410 * 353.92393 * 21 19 10 23 23 O 1.34539 * 119.99891 * 173.91538 * 21 19 10 24 24 H 0.96997 * 120.00288 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47049 * 60.00292 * 9 7 2 26 26 H 1.09000 * 109.47036 * 299.99801 * 9 7 2 27 27 H 1.08995 * 109.46814 * 29.17479 * 11 10 9 28 28 H 1.08995 * 109.46827 * 149.18120 * 11 10 9 29 29 H 1.09004 * 109.47223 * 300.00280 * 12 11 10 30 30 H 1.09001 * 109.46776 * 60.00198 * 12 11 10 31 31 H 1.09005 * 109.50475 * 297.54751 * 14 13 12 32 32 H 1.08995 * 109.50339 * 57.67139 * 14 13 12 33 33 H 1.09002 * 109.50480 * 296.91936 * 15 14 13 34 34 H 1.08994 * 109.54163 * 176.80700 * 15 14 13 35 35 H 1.09002 * 109.50910 * 298.73847 * 17 16 15 36 36 H 1.09007 * 109.54832 * 178.62441 * 17 16 15 37 37 H 1.08996 * 109.50524 * 302.32819 * 18 13 12 38 38 H 1.09001 * 109.50781 * 62.41398 * 18 13 12 39 39 H 0.96703 * 117.00401 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2839 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1938 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2033 -3.6126 0.0005 11 6 2.5973 -4.2395 -1.2636 12 6 1.6545 -5.4047 -1.5706 13 7 2.0499 -6.0337 -2.8379 14 6 1.8420 -5.1171 -3.9684 15 6 2.3213 -5.7889 -5.2579 16 8 1.6276 -7.0276 -5.4305 17 6 1.8086 -7.9445 -4.3480 18 6 1.3240 -7.2946 -3.0492 19 6 2.7167 -4.0602 1.1635 20 8 3.4294 -5.0423 1.1740 21 6 2.4034 -3.3507 2.4408 22 8 1.7796 -2.3112 2.4197 23 8 2.8133 -3.8654 3.6143 24 1 -0.4850 0.8400 -0.0004 25 1 0.6249 -2.5571 -0.8897 26 1 0.6242 -2.5567 0.8903 27 1 2.5403 -3.5048 -2.0667 28 1 3.6189 -4.6105 -1.1823 29 1 1.7114 -6.1395 -0.7674 30 1 0.6328 -5.0337 -1.6519 31 1 0.7816 -4.8796 -4.0541 32 1 2.4086 -4.2009 -3.8029 33 1 3.3929 -5.9779 -5.1932 34 1 2.1174 -5.1362 -6.1066 35 1 2.8653 -8.1961 -4.2569 36 1 1.2336 -8.8510 -4.5379 37 1 1.5126 -7.9677 -2.2129 38 1 0.2553 -7.0920 -3.1195 39 1 2.5866 -3.3709 4.4138 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594610493.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:30:05 Heat of formation + Delta-G solvation = -165.585236 kcal Electronic energy + Delta-G solvation = -23524.891780 eV Core-core repulsion = 19853.755110 eV Total energy + Delta-G solvation = -3671.136670 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 286.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.88113 -40.59395 -39.87063 -37.85600 -37.12379 -36.14941 -34.54997 -32.20117 -31.33993 -29.17296 -27.93618 -26.08603 -25.02935 -24.83476 -23.29483 -21.36743 -20.86483 -19.11431 -18.78603 -18.22986 -17.82342 -17.37934 -17.12275 -16.95564 -16.50797 -16.28254 -15.97168 -15.78767 -15.58875 -15.12668 -14.68987 -14.56630 -14.33672 -14.08435 -13.70145 -13.52385 -13.16505 -12.94273 -12.75734 -12.55937 -12.49789 -12.34030 -12.30792 -12.04632 -11.84105 -11.73542 -11.45029 -10.84661 -10.69769 -10.45652 -9.78238 -9.46557 -8.16686 -6.25539 0.23481 1.19299 1.41326 1.42954 1.49919 2.03110 2.39147 2.56073 2.90680 3.01877 3.17784 3.78312 3.88903 3.98305 4.00427 4.07854 4.21275 4.31520 4.36605 4.42820 4.58485 4.68350 4.70646 4.75251 4.83147 4.89203 4.94050 5.02805 5.13963 5.38019 5.59368 5.71707 5.83331 5.90731 6.05991 6.15189 6.18883 6.62198 6.79635 7.04064 7.41167 8.91611 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.015321 B = 0.005027 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.089127 B = 5568.695360 C = 6954.360360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.023 3.977 3 Si 0.953 3.047 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.279 1.279 7 C -0.522 4.522 8 H 0.049 0.951 9 C 0.249 3.751 10 N -0.560 5.560 11 C 0.126 3.874 12 C 0.056 3.944 13 N -0.536 5.536 14 C 0.009 3.991 15 C 0.067 3.933 16 O -0.404 6.404 17 C 0.066 3.934 18 C 0.016 3.984 19 C 0.527 3.473 20 O -0.539 6.539 21 C 0.458 3.542 22 O -0.460 6.460 23 O -0.492 6.492 24 H 0.264 0.736 25 H 0.026 0.974 26 H 0.040 0.960 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.031 0.969 31 H 0.035 0.965 32 H 0.092 0.908 33 H 0.066 0.934 34 H 0.114 0.886 35 H 0.065 0.935 36 H 0.118 0.882 37 H 0.096 0.904 38 H 0.036 0.964 39 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.178 -11.752 -4.970 13.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.177 4.177 3 Si 0.778 3.222 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.205 1.205 7 C -0.560 4.560 8 H 0.067 0.933 9 C 0.129 3.871 10 N -0.293 5.293 11 C 0.004 3.996 12 C -0.073 4.073 13 N -0.262 5.262 14 C -0.119 4.119 15 C -0.009 4.009 16 O -0.323 6.323 17 C -0.011 4.011 18 C -0.112 4.112 19 C 0.310 3.690 20 O -0.419 6.419 21 C 0.293 3.707 22 O -0.344 6.344 23 O -0.306 6.306 24 H 0.073 0.927 25 H 0.043 0.957 26 H 0.057 0.943 27 H 0.107 0.893 28 H 0.104 0.896 29 H 0.093 0.907 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.110 0.890 33 H 0.085 0.915 34 H 0.132 0.868 35 H 0.083 0.917 36 H 0.136 0.864 37 H 0.114 0.886 38 H 0.055 0.945 39 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges 3.680 -12.193 -5.460 13.857 hybrid contribution -0.784 1.846 1.079 2.277 sum 2.896 -10.347 -4.381 11.604 Atomic orbital electron populations 1.69995 1.07214 1.27834 1.51169 1.25527 0.95494 1.02027 0.94605 0.85699 0.78459 0.79296 0.78714 1.19140 1.20768 1.20455 1.21344 0.92681 0.91303 1.50692 0.93305 1.19478 0.87344 0.82443 0.97873 1.48103 1.42691 1.33495 1.04986 1.21494 0.99368 0.94718 0.84023 1.22251 0.96549 0.96357 0.92129 1.62157 1.57227 1.05236 1.01551 1.22954 1.00194 0.96976 0.91760 1.22747 0.96580 0.85155 0.96455 1.87945 1.73042 1.27399 1.43908 1.22785 1.01856 0.92249 0.84186 1.22879 0.96097 0.91782 1.00429 1.18920 0.81917 0.84061 0.84141 1.90702 1.38671 1.25910 1.86577 1.23012 0.77735 0.83692 0.86215 1.91116 1.33997 1.21997 1.87279 1.84539 1.73901 1.55569 1.16590 0.92667 0.95651 0.94255 0.89315 0.89551 0.90721 0.95054 0.94710 0.88977 0.91545 0.86776 0.91680 0.86364 0.88619 0.94543 0.70460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.40 13.29 21.45 0.28 -52.11 16 2 C 0.02 1.25 5.46 84.65 0.46 1.71 16 3 Si 0.95 42.99 29.54 68.60 2.03 45.02 16 4 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 7 C -0.52 -27.58 7.77 25.60 0.20 -27.38 16 8 H 0.05 2.60 7.81 -2.91 -0.02 2.58 16 9 C 0.25 12.02 4.74 85.63 0.41 12.43 16 10 N -0.56 -23.07 2.47 -827.74 -2.04 -25.11 16 11 C 0.13 4.33 5.27 86.38 0.46 4.79 16 12 C 0.06 1.70 5.28 86.30 0.46 2.16 16 13 N -0.54 -13.89 4.73 -895.18 -4.23 -18.12 16 14 C 0.01 0.22 5.44 86.31 0.47 0.69 16 15 C 0.07 1.37 7.01 72.01 0.50 1.88 16 16 O -0.40 -9.21 10.83 -148.98 -1.61 -10.82 16 17 C 0.07 1.23 7.01 72.02 0.50 1.74 16 18 C 0.02 0.35 5.65 86.32 0.49 0.84 16 19 C 0.53 21.79 7.68 87.26 0.67 22.47 16 20 O -0.54 -22.93 16.62 9.26 0.15 -22.78 16 21 C 0.46 18.07 8.20 70.84 0.58 18.65 16 22 O -0.46 -21.16 12.97 20.65 0.27 -20.89 16 23 O -0.49 -14.97 13.30 -49.69 -0.66 -15.63 16 24 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 25 H 0.03 1.27 8.03 -2.39 -0.02 1.25 16 26 H 0.04 2.09 5.91 -2.39 -0.01 2.08 16 27 H 0.09 3.00 6.44 -2.39 -0.02 2.98 16 28 H 0.09 2.98 7.53 -2.39 -0.02 2.96 16 29 H 0.07 2.34 8.04 -2.38 -0.02 2.32 16 30 H 0.03 1.01 8.12 -2.39 -0.02 0.99 16 31 H 0.03 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.09 2.22 6.38 -2.39 -0.02 2.21 16 33 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.12 1.65 8.14 -2.38 -0.02 1.63 16 37 H 0.10 1.88 8.09 -2.39 -0.02 1.87 16 38 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.43 8.19 9.11 -74.05 -0.67 7.51 16 Total: -1.00 -66.77 327.17 -0.22 -66.99 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: 0.40 Total: 13.49 kcal Atomic # 6 Polarization: 34.76 SS G_CDS: 5.20 Total: 39.96 kcal Atomic # 7 Polarization: -89.35 SS G_CDS: -5.99 Total: -95.34 kcal Atomic # 8 Polarization: -68.26 SS G_CDS: -1.85 Total: -70.12 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -66.77 -0.22 -66.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594610493.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.592 kcal (2) G-P(sol) polarization free energy of solvation -66.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds