Wall clock time and date at job start Tue Mar 31 2020 03:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 113.99602 * 2 1 4 4 H 1.09000 * 109.57321 * 29.84795 * 3 2 1 5 5 C 1.53116 * 109.52758 * 269.68710 * 3 2 1 6 6 C 1.53038 * 109.27987 * 182.44075 * 5 3 2 7 7 N 1.46854 * 109.52035 * 59.18026 * 6 5 3 8 8 C 1.46899 * 110.99733 * 174.16109 * 7 6 5 9 9 C 1.50694 * 109.47186 * 288.04941 * 8 7 6 10 10 O 1.21287 * 119.99903 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00084 * 179.72586 * 9 8 7 12 12 C 1.37093 * 120.00131 * 180.27787 * 11 9 8 13 13 H 1.08003 * 120.00411 * 359.97438 * 12 11 9 14 14 C 1.38950 * 120.00262 * 179.97438 * 12 11 9 15 15 N 1.31409 * 119.99787 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00226 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47025 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.46863 * 120.00435 * 16 14 12 19 19 H 1.48499 * 109.47407 * 240.00196 * 16 14 12 20 20 C 1.46850 * 111.19374 * 298.25555 * 7 6 5 21 21 H 1.08999 * 109.46696 * 301.73750 * 20 7 6 22 22 C 1.50705 * 109.45940 * 181.76326 * 20 7 6 23 23 O 1.20830 * 119.99570 * 330.69609 * 22 20 7 24 24 O 1.34224 * 120.00387 * 150.70381 * 22 20 7 25 25 C 1.53033 * 109.52408 * 61.74736 * 20 7 6 26 26 H 1.08995 * 109.47368 * 299.99072 * 1 2 3 27 27 H 1.08997 * 109.47530 * 59.99925 * 1 2 3 28 28 H 1.09007 * 109.46489 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.50138 * 302.38355 * 5 3 2 30 30 H 1.08999 * 109.50114 * 62.50112 * 5 3 2 31 31 H 1.08997 * 109.46249 * 299.16533 * 6 5 3 32 32 H 1.09003 * 109.46105 * 179.19338 * 6 5 3 33 33 H 1.08999 * 109.47345 * 168.04705 * 8 7 6 34 34 H 1.09005 * 109.47211 * 48.05327 * 8 7 6 35 35 H 0.97004 * 120.00150 * 0.27244 * 11 9 8 36 36 H 0.97002 * 119.99833 * 179.97438 * 15 14 12 37 37 H 0.96698 * 117.00435 * 180.02562 * 24 22 20 38 38 H 1.09000 * 109.50421 * 60.75897 * 25 20 7 39 39 H 1.09003 * 109.50429 * 180.83289 * 25 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 2.0014 0.5111 5 6 2.2255 1.7699 -1.4431 6 6 2.9035 3.1418 -1.4366 7 7 4.1908 3.0497 -0.7358 8 6 4.9329 4.3140 -0.8297 9 6 5.4471 4.4914 -2.2350 10 8 5.2176 3.6479 -3.0758 11 7 6.1570 5.5903 -2.5592 12 6 6.6199 5.7545 -3.8391 13 1 6.4162 5.0030 -4.5876 14 6 7.3513 6.8876 -4.1734 15 7 7.5988 7.8022 -3.2628 16 14 7.9827 7.1109 -5.9172 17 1 7.5718 5.9487 -6.7451 18 1 7.4134 8.3552 -6.4942 19 1 9.4645 7.2069 -5.8987 20 6 4.0052 2.6512 0.6654 21 1 3.3593 3.3727 1.1657 22 6 5.3433 2.6109 1.3574 23 8 6.3422 2.3570 0.7266 24 8 5.4256 2.8569 2.6743 25 6 3.3601 1.2646 0.7216 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3632 -1.0278 -0.0005 29 1 2.8593 1.0532 -1.9652 30 1 1.2630 1.8420 -1.9496 31 1 2.2629 3.8611 -0.9263 32 1 3.0713 3.4689 -2.4627 33 1 5.7728 4.2948 -0.1352 34 1 4.2717 5.1430 -0.5773 35 1 6.3403 6.2651 -1.8868 36 1 8.1097 8.5931 -3.4961 37 1 6.3055 2.8199 3.0737 38 1 4.0118 0.5400 0.2335 39 1 3.2089 0.9755 1.7616 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599124043.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:08 Heat of formation + Delta-G solvation = -159.605385 kcal Electronic energy + Delta-G solvation = -23548.167416 eV Core-core repulsion = 19877.290051 eV Total energy + Delta-G solvation = -3670.877365 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 286.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.76915 -39.09278 -38.16593 -36.82666 -35.95688 -33.89343 -32.47180 -31.38116 -31.12929 -27.81636 -26.42505 -24.98393 -24.31297 -22.99814 -21.34007 -19.86806 -19.19051 -18.11340 -17.83876 -17.15481 -16.45056 -16.02249 -15.61723 -15.57561 -15.13347 -14.85920 -14.70172 -14.36209 -13.87438 -13.71321 -13.37454 -13.22124 -12.91444 -12.62770 -12.13225 -12.05765 -11.85349 -11.52351 -11.47181 -11.36948 -11.14340 -10.92767 -10.89801 -10.73261 -10.31702 -10.29340 -10.18192 -9.62701 -9.43781 -8.52432 -7.98397 -7.90068 -6.37696 -3.78092 2.18321 2.79895 3.19261 3.29453 3.36931 3.60011 3.77739 3.95099 4.24720 4.61153 4.76271 4.85434 4.94784 5.00836 5.12914 5.15094 5.20335 5.26581 5.30330 5.34393 5.45998 5.49873 5.67371 5.71213 5.80633 5.89340 6.00674 6.20571 6.30499 6.37173 6.47757 7.03807 7.05996 7.15300 7.59459 7.93680 8.10455 8.66091 9.22487 9.58648 10.10612 10.80410 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.021606 B = 0.004196 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.616282 B = 6671.215571 C = 7632.460033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.093 3.907 4 H 0.061 0.939 5 C -0.137 4.137 6 C 0.064 3.936 7 N -0.496 5.496 8 C 0.039 3.961 9 C 0.451 3.549 10 O -0.572 6.572 11 N -0.566 5.566 12 C -0.296 4.296 13 H 0.104 0.896 14 C 0.021 3.979 15 N -0.903 5.903 16 Si 0.929 3.071 17 H -0.268 1.268 18 H -0.282 1.282 19 H -0.282 1.282 20 C 0.102 3.898 21 H 0.072 0.928 22 C 0.476 3.524 23 O -0.478 6.478 24 O -0.521 6.521 25 C -0.103 4.103 26 H 0.040 0.960 27 H 0.042 0.958 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.029 0.971 32 H 0.107 0.893 33 H 0.088 0.912 34 H 0.051 0.949 35 H 0.391 0.609 36 H 0.270 0.730 37 H 0.410 0.590 38 H 0.091 0.909 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.292 -8.536 12.564 19.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.035 3.965 4 H 0.079 0.921 5 C -0.175 4.175 6 C -0.063 4.063 7 N -0.222 5.222 8 C -0.092 4.092 9 C 0.236 3.764 10 O -0.456 6.456 11 N -0.203 5.203 12 C -0.425 4.425 13 H 0.122 0.878 14 C -0.180 4.180 15 N -0.545 5.545 16 Si 0.756 3.244 17 H -0.192 1.192 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.009 4.009 21 H 0.089 0.911 22 C 0.316 3.684 23 O -0.362 6.362 24 O -0.334 6.334 25 C -0.141 4.141 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.103 0.897 29 H 0.106 0.894 30 H 0.088 0.912 31 H 0.048 0.952 32 H 0.125 0.875 33 H 0.107 0.893 34 H 0.069 0.931 35 H 0.224 0.776 36 H 0.080 0.920 37 H 0.269 0.731 38 H 0.110 0.890 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.052 -9.521 11.374 19.112 hybrid contribution 0.499 1.540 0.315 1.649 sum -11.553 -7.981 11.688 18.270 Atomic orbital electron populations 1.22780 0.81190 1.02627 0.99948 1.87917 1.19503 1.27594 1.95087 1.22130 0.93730 0.84499 0.96121 0.92114 1.22103 1.00980 0.97980 0.96448 1.22162 0.87103 0.95667 1.01328 1.61314 1.20005 1.32195 1.08726 1.21996 0.98323 0.89629 0.99261 1.19515 0.84231 0.83932 0.88690 1.90507 1.61378 1.43258 1.50433 1.41840 1.47549 1.18938 1.11964 1.19749 1.30103 1.05442 0.87218 0.87829 1.25252 0.97489 0.95550 0.99741 1.69623 1.40615 1.10373 1.33895 0.85802 0.78340 0.78289 0.81925 1.19209 1.20829 1.20782 1.21083 0.90462 0.99230 0.90078 0.91065 1.23163 0.91930 0.73342 0.79995 1.90817 1.37808 1.41885 1.65666 1.84508 1.40324 1.83550 1.24997 1.21544 0.96051 0.94905 1.01560 0.94168 0.93926 0.89728 0.89422 0.91198 0.95239 0.87469 0.89338 0.93070 0.77608 0.92001 0.73081 0.89007 0.90036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.82 101.05 1.09 1.35 16 2 O -0.38 -4.46 10.35 -35.23 -0.36 -4.82 16 3 C 0.09 1.06 2.68 -26.61 -0.07 0.99 16 4 H 0.06 0.58 7.79 -51.93 -0.40 0.18 16 5 C -0.14 -1.79 5.72 -26.65 -0.15 -1.94 16 6 C 0.06 0.98 5.11 -3.83 -0.02 0.96 16 7 N -0.50 -8.46 3.88 -229.51 -0.89 -9.35 16 8 C 0.04 0.73 5.09 -4.98 -0.03 0.71 16 9 C 0.45 11.03 7.47 -10.99 -0.08 10.94 16 10 O -0.57 -15.77 14.43 5.55 0.08 -15.69 16 11 N -0.57 -14.76 5.29 -10.97 -0.06 -14.82 16 12 C -0.30 -8.40 9.68 -14.94 -0.14 -8.55 16 13 H 0.10 3.09 7.16 -52.48 -0.38 2.71 16 14 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 15 N -0.90 -24.99 13.05 55.50 0.72 -24.27 16 16 Si 0.93 21.41 29.55 -169.99 -5.02 16.38 16 17 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 C 0.10 1.37 2.34 -68.87 -0.16 1.20 16 21 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 22 C 0.48 6.77 6.17 36.01 0.22 6.99 16 23 O -0.48 -8.83 16.16 -18.75 -0.30 -9.13 16 24 O -0.52 -5.42 13.42 -39.24 -0.53 -5.94 16 25 C -0.10 -1.24 5.01 -26.65 -0.13 -1.37 16 26 H 0.04 0.27 8.09 -51.93 -0.42 -0.15 16 27 H 0.04 0.32 7.96 -51.93 -0.41 -0.09 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.07 0.79 7.96 -51.93 -0.41 0.37 16 31 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.11 1.98 6.35 -51.93 -0.33 1.65 16 33 H 0.09 1.66 5.69 -51.93 -0.30 1.37 16 34 H 0.05 0.84 8.05 -51.93 -0.42 0.42 16 35 H 0.39 9.79 7.90 -40.82 -0.32 9.47 16 36 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 37 H 0.41 2.61 9.10 45.56 0.41 3.03 16 38 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 326.28 15.07 4.92 4.92 Total: -1.00 -34.70 326.28 -5.67 -40.36 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -4.65 Total: 10.60 kcal Atomic # 6 Polarization: 11.32 SS G_CDS: 0.43 Total: 11.75 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: -0.22 Total: -48.44 kcal Atomic # 8 Polarization: -34.47 SS G_CDS: -1.11 Total: -35.58 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.70 -5.67 -40.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599124043.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.241 kcal (2) G-P(sol) polarization free energy of solvation -34.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds