Wall clock time and date at job start Tue Mar 31 2020 03:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 113.99602 * 2 1 4 4 H 1.09000 * 109.57321 * 29.84795 * 3 2 1 5 5 C 1.53116 * 109.52758 * 269.68710 * 3 2 1 6 6 C 1.53038 * 109.27987 * 182.44075 * 5 3 2 7 7 N 1.46854 * 109.52035 * 59.18026 * 6 5 3 8 8 C 1.46899 * 110.99733 * 174.16109 * 7 6 5 9 9 C 1.50694 * 109.47186 * 288.04941 * 8 7 6 10 10 O 1.21287 * 119.99903 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00084 * 179.72586 * 9 8 7 12 12 C 1.37093 * 120.00131 * 180.27787 * 11 9 8 13 13 H 1.08003 * 120.00411 * 359.97438 * 12 11 9 14 14 C 1.38950 * 120.00262 * 179.97438 * 12 11 9 15 15 N 1.31409 * 119.99787 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00226 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47025 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.46863 * 120.00435 * 16 14 12 19 19 H 1.48499 * 109.47407 * 240.00196 * 16 14 12 20 20 C 1.46850 * 111.19374 * 298.25555 * 7 6 5 21 21 H 1.08999 * 109.46696 * 301.73750 * 20 7 6 22 22 C 1.50705 * 109.45940 * 181.76326 * 20 7 6 23 23 O 1.20830 * 119.99570 * 330.69609 * 22 20 7 24 24 O 1.34224 * 120.00387 * 150.70381 * 22 20 7 25 25 C 1.53033 * 109.52408 * 61.74736 * 20 7 6 26 26 H 1.08995 * 109.47368 * 299.99072 * 1 2 3 27 27 H 1.08997 * 109.47530 * 59.99925 * 1 2 3 28 28 H 1.09007 * 109.46489 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.50138 * 302.38355 * 5 3 2 30 30 H 1.08999 * 109.50114 * 62.50112 * 5 3 2 31 31 H 1.08997 * 109.46249 * 299.16533 * 6 5 3 32 32 H 1.09003 * 109.46105 * 179.19338 * 6 5 3 33 33 H 1.08999 * 109.47345 * 168.04705 * 8 7 6 34 34 H 1.09005 * 109.47211 * 48.05327 * 8 7 6 35 35 H 0.97004 * 120.00150 * 0.27244 * 11 9 8 36 36 H 0.97002 * 119.99833 * 179.97438 * 15 14 12 37 37 H 0.96698 * 117.00435 * 180.02562 * 24 22 20 38 38 H 1.09000 * 109.50421 * 60.75897 * 25 20 7 39 39 H 1.09003 * 109.50429 * 180.83289 * 25 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 2.0014 0.5111 5 6 2.2255 1.7699 -1.4431 6 6 2.9035 3.1418 -1.4366 7 7 4.1908 3.0497 -0.7358 8 6 4.9329 4.3140 -0.8297 9 6 5.4471 4.4914 -2.2350 10 8 5.2176 3.6479 -3.0758 11 7 6.1570 5.5903 -2.5592 12 6 6.6199 5.7545 -3.8391 13 1 6.4162 5.0030 -4.5876 14 6 7.3513 6.8876 -4.1734 15 7 7.5988 7.8022 -3.2628 16 14 7.9827 7.1109 -5.9172 17 1 7.5718 5.9487 -6.7451 18 1 7.4134 8.3552 -6.4942 19 1 9.4645 7.2069 -5.8987 20 6 4.0052 2.6512 0.6654 21 1 3.3593 3.3727 1.1657 22 6 5.3433 2.6109 1.3574 23 8 6.3422 2.3570 0.7266 24 8 5.4256 2.8569 2.6743 25 6 3.3601 1.2646 0.7216 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3632 -1.0278 -0.0005 29 1 2.8593 1.0532 -1.9652 30 1 1.2630 1.8420 -1.9496 31 1 2.2629 3.8611 -0.9263 32 1 3.0713 3.4689 -2.4627 33 1 5.7728 4.2948 -0.1352 34 1 4.2717 5.1430 -0.5773 35 1 6.3403 6.2651 -1.8868 36 1 8.1097 8.5931 -3.4961 37 1 6.3055 2.8199 3.0737 38 1 4.0118 0.5400 0.2335 39 1 3.2089 0.9755 1.7616 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599124043.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:06 Heat of formation + Delta-G solvation = -188.265265 kcal Electronic energy + Delta-G solvation = -23549.410202 eV Core-core repulsion = 19877.290051 eV Total energy + Delta-G solvation = -3672.120150 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 286.141 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.90300 -40.31491 -39.68380 -37.98788 -37.02644 -35.93580 -33.71556 -33.18230 -32.43324 -29.10779 -27.49208 -26.31471 -25.77713 -24.21350 -22.35219 -21.12809 -20.85601 -19.90349 -19.15221 -18.23782 -17.81017 -17.06979 -16.99878 -16.75919 -16.45455 -16.08929 -15.90807 -15.80779 -15.41280 -15.37965 -14.69323 -14.28164 -14.12498 -13.85532 -13.58873 -13.35556 -13.26935 -12.90826 -12.84523 -12.53656 -12.42933 -12.40787 -12.17794 -12.11922 -11.89528 -11.70715 -11.48258 -11.38751 -10.50568 -10.32123 -10.00819 -9.32850 -8.46955 -5.95595 1.09507 1.35895 1.40668 1.55308 1.82554 2.04174 2.26934 2.58467 2.80126 3.19003 3.32156 3.68896 3.79842 3.90194 4.02577 4.08818 4.19213 4.24239 4.36768 4.40047 4.42965 4.48271 4.58241 4.60920 4.78847 4.83359 4.93619 5.01231 5.05692 5.27248 5.40572 5.56534 5.74533 5.98855 6.03471 6.29107 6.59707 6.98719 7.12566 7.54849 8.11118 8.71021 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.021606 B = 0.004196 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.616282 B = 6671.215571 C = 7632.460033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.403 6.403 3 C 0.100 3.900 4 H 0.093 0.907 5 C -0.131 4.131 6 C 0.067 3.933 7 N -0.526 5.526 8 C 0.055 3.945 9 C 0.446 3.554 10 O -0.610 6.610 11 N -0.575 5.575 12 C -0.331 4.331 13 H 0.078 0.922 14 C -0.014 4.014 15 N -0.922 5.922 16 Si 0.994 3.006 17 H -0.274 1.274 18 H -0.268 1.268 19 H -0.272 1.272 20 C 0.101 3.899 21 H 0.109 0.891 22 C 0.484 3.516 23 O -0.531 6.531 24 O -0.503 6.503 25 C -0.098 4.098 26 H 0.059 0.941 27 H 0.047 0.953 28 H 0.095 0.905 29 H 0.052 0.948 30 H 0.088 0.912 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.394 0.606 36 H 0.277 0.723 37 H 0.429 0.571 38 H 0.061 0.939 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.802 -7.977 14.335 21.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.323 6.323 3 C 0.043 3.957 4 H 0.111 0.889 5 C -0.170 4.170 6 C -0.060 4.060 7 N -0.253 5.253 8 C -0.076 4.076 9 C 0.233 3.767 10 O -0.496 6.496 11 N -0.213 5.213 12 C -0.461 4.461 13 H 0.096 0.904 14 C -0.213 4.213 15 N -0.563 5.563 16 Si 0.817 3.183 17 H -0.199 1.199 18 H -0.193 1.193 19 H -0.197 1.197 20 C -0.008 4.008 21 H 0.126 0.874 22 C 0.325 3.675 23 O -0.420 6.420 24 O -0.317 6.317 25 C -0.136 4.136 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.113 0.887 29 H 0.071 0.929 30 H 0.107 0.893 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.108 0.892 34 H 0.100 0.900 35 H 0.228 0.772 36 H 0.087 0.913 37 H 0.291 0.709 38 H 0.080 0.920 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -13.580 -8.952 13.206 20.951 hybrid contribution 0.931 1.308 -0.159 1.614 sum -12.649 -7.644 13.047 19.714 Atomic orbital electron populations 1.23008 0.79349 1.03833 1.01076 1.87900 1.21580 1.27684 1.95108 1.22049 0.93941 0.85222 0.94533 0.88933 1.22040 1.00810 0.95933 0.98169 1.22074 0.87074 0.97579 0.99271 1.61138 1.21122 1.31359 1.11682 1.21764 0.99188 0.91907 0.94774 1.20570 0.82760 0.82561 0.90798 1.90478 1.62374 1.44308 1.52434 1.41910 1.48221 1.19756 1.11426 1.19693 1.32313 1.05963 0.88108 0.90383 1.26044 0.96895 0.94693 1.03674 1.69681 1.40535 1.10614 1.35455 0.84861 0.78068 0.78281 0.77053 1.19873 1.19276 1.19732 1.21223 0.90765 1.00735 0.88070 0.87367 1.23349 0.91524 0.71880 0.80721 1.90811 1.39565 1.44550 1.67042 1.84456 1.41908 1.82415 1.22922 1.21534 0.95846 0.93285 1.02963 0.92279 0.93465 0.88670 0.92900 0.89341 0.91982 0.91673 0.89195 0.90013 0.77204 0.91308 0.70855 0.91996 0.87297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.82 113.37 1.23 1.54 16 2 O -0.40 -8.53 10.35 -148.98 -1.54 -10.07 16 3 C 0.10 2.02 2.68 30.67 0.08 2.10 16 4 H 0.09 1.32 7.79 -2.39 -0.02 1.30 16 5 C -0.13 -3.34 5.72 30.65 0.18 -3.17 16 6 C 0.07 1.99 5.11 86.32 0.44 2.43 16 7 N -0.53 -17.66 3.88 -880.03 -3.42 -21.08 16 8 C 0.05 2.03 5.09 85.56 0.44 2.47 16 9 C 0.45 22.50 7.47 87.66 0.65 23.16 16 10 O -0.61 -35.35 14.43 -3.05 -0.04 -35.39 16 11 N -0.58 -30.94 5.29 -307.00 -1.62 -32.56 16 12 C -0.33 -19.47 9.68 84.04 0.81 -18.66 16 13 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 14 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 15 N -0.92 -50.89 13.05 21.66 0.28 -50.60 16 16 Si 0.99 44.08 29.55 68.60 2.03 46.10 16 17 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 18 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 19 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 20 C 0.10 2.49 2.34 44.19 0.10 2.59 16 21 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 22 C 0.48 12.97 6.17 71.24 0.44 13.41 16 23 O -0.53 -19.74 16.16 21.95 0.35 -19.38 16 24 O -0.50 -8.96 13.42 -51.36 -0.69 -9.65 16 25 C -0.10 -2.17 5.01 30.64 0.15 -2.01 16 26 H 0.06 0.58 8.09 -2.39 -0.02 0.56 16 27 H 0.05 0.59 7.96 -2.39 -0.02 0.57 16 28 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 29 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.09 1.87 7.96 -2.39 -0.02 1.85 16 31 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.06 2.50 6.35 -2.39 -0.02 2.48 16 33 H 0.09 3.35 5.69 -2.39 -0.01 3.33 16 34 H 0.08 2.52 8.05 -2.38 -0.02 2.50 16 35 H 0.39 20.17 7.90 -92.71 -0.73 19.44 16 36 H 0.28 14.25 8.31 -92.71 -0.77 13.48 16 37 H 0.43 4.34 9.10 -74.06 -0.67 3.66 16 38 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -78.52 326.28 0.02 -78.50 By element: Atomic # 1 Polarization: 30.89 SS G_CDS: -0.32 Total: 30.57 kcal Atomic # 6 Polarization: 18.58 SS G_CDS: 4.99 Total: 23.57 kcal Atomic # 7 Polarization: -99.49 SS G_CDS: -4.76 Total: -104.25 kcal Atomic # 8 Polarization: -72.58 SS G_CDS: -1.92 Total: -74.50 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -78.52 0.02 -78.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599124043.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.769 kcal (2) G-P(sol) polarization free energy of solvation -78.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds