Wall clock time and date at job start Tue Mar 31 2020 03:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42905 * 113.99716 * 2 1 4 4 H 1.08997 * 109.57510 * 29.83822 * 3 2 1 5 5 C 1.53129 * 109.48913 * 269.65792 * 3 2 1 6 6 C 1.53041 * 109.31024 * 297.71276 * 5 3 2 7 7 N 1.46848 * 109.51939 * 300.83967 * 6 5 3 8 8 C 1.46901 * 110.99588 * 185.83914 * 7 6 5 9 9 C 1.50708 * 109.47028 * 72.17616 * 8 7 6 10 10 O 1.21297 * 119.99717 * 359.97438 * 9 8 7 11 11 N 1.34771 * 119.99879 * 179.97438 * 9 8 7 12 12 C 1.37101 * 119.99889 * 179.97438 * 11 9 8 13 13 H 1.08001 * 120.00048 * 0.02562 * 12 11 9 14 14 C 1.38945 * 120.00065 * 180.02562 * 12 11 9 15 15 N 1.31418 * 120.00133 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00154 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47217 * 59.99735 * 16 14 12 18 18 H 1.48498 * 109.47103 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46721 * 299.99726 * 16 14 12 20 20 C 1.46845 * 111.19827 * 61.74603 * 7 6 5 21 21 H 1.09003 * 109.46556 * 58.27210 * 20 7 6 22 22 C 1.50698 * 109.45305 * 178.24381 * 20 7 6 23 23 O 1.20831 * 120.00192 * 28.95519 * 22 20 7 24 24 O 1.34234 * 120.00059 * 208.95758 * 22 20 7 25 25 C 1.53035 * 109.52285 * 298.25430 * 20 7 6 26 26 H 1.09006 * 109.47202 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47548 * 300.00210 * 1 2 3 28 28 H 1.09001 * 109.47421 * 60.00435 * 1 2 3 29 29 H 1.08995 * 109.46488 * 177.76800 * 5 3 2 30 30 H 1.09000 * 109.49848 * 57.67189 * 5 3 2 31 31 H 1.08997 * 109.45594 * 180.82484 * 6 5 3 32 32 H 1.09004 * 109.45279 * 60.85131 * 6 5 3 33 33 H 1.09001 * 109.47353 * 192.17440 * 8 7 6 34 34 H 1.09001 * 109.47435 * 312.17824 * 8 7 6 35 35 H 0.97004 * 120.00353 * 0.02562 * 11 9 8 36 36 H 0.97001 * 119.99781 * 180.02562 * 15 14 12 37 37 H 0.96698 * 116.99955 * 180.02562 * 24 22 20 38 38 H 1.09005 * 109.50182 * 179.12397 * 25 20 7 39 39 H 1.09001 * 109.50144 * 299.19673 * 25 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3448 2.0014 0.5110 5 6 2.2258 1.7687 -1.4435 6 6 3.2088 0.8228 -2.1371 7 7 4.4842 0.8207 -1.4090 8 6 5.4965 0.0313 -2.1232 9 6 5.9402 0.7791 -3.3541 10 8 5.4599 1.8628 -3.6114 11 7 6.8706 0.2438 -4.1690 12 6 7.2739 0.9238 -5.2891 13 1 6.8462 1.8887 -5.5182 14 6 8.2327 0.3717 -6.1295 15 7 8.7528 -0.8027 -5.8510 16 14 8.7827 1.2986 -7.6552 17 1 9.3642 2.6058 -7.2576 18 1 9.8056 0.5003 -8.3775 19 1 7.6149 1.5260 -8.5439 20 6 4.3102 0.3335 -0.0347 21 1 3.8918 -0.6728 -0.0563 22 6 5.6466 0.3067 0.6612 23 8 6.5108 1.0877 0.3400 24 8 5.8769 -0.5847 1.6380 25 6 3.3600 1.2647 0.7215 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 2.6322 2.7801 -1.4436 30 1 1.2742 1.7582 -1.9750 31 1 3.3754 1.1589 -3.1605 32 1 2.7954 -0.1857 -2.1486 33 1 6.3537 -0.1357 -1.4709 34 1 5.0697 -0.9282 -2.4151 35 1 7.2545 -0.6231 -3.9634 36 1 9.4224 -1.1879 -6.4376 37 1 6.7490 -0.5633 2.0552 38 1 3.2189 0.8941 1.7369 39 1 3.7847 2.2680 0.7561 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599124049.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:20 Heat of formation + Delta-G solvation = -158.676007 kcal Electronic energy + Delta-G solvation = -23770.920109 eV Core-core repulsion = 20100.083045 eV Total energy + Delta-G solvation = -3670.837064 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 286.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.70890 -39.11991 -38.09555 -36.57754 -35.82916 -33.84127 -32.43993 -31.28482 -31.08697 -27.64777 -26.57409 -25.01936 -24.30959 -22.98295 -21.28230 -19.60187 -19.12216 -18.02477 -17.79437 -16.96957 -16.42116 -15.86094 -15.65729 -15.52687 -15.20464 -14.93220 -14.54990 -14.21999 -13.73626 -13.67143 -13.37502 -13.05619 -12.68935 -12.53484 -12.46400 -11.99830 -11.70812 -11.51739 -11.44684 -11.26497 -11.08070 -11.03395 -10.76542 -10.68657 -10.39036 -10.15309 -10.06991 -9.63345 -9.38844 -8.42767 -7.90378 -7.83574 -6.34017 -3.74507 2.27888 2.93624 3.25273 3.30052 3.34710 3.58731 3.93801 4.00811 4.28617 4.60101 4.76568 4.91447 5.04488 5.10864 5.16188 5.20638 5.30220 5.31561 5.39581 5.48129 5.55123 5.62016 5.70773 5.77961 5.85248 5.91728 6.00650 6.26884 6.36931 6.38693 6.54906 7.04223 7.17678 7.27893 7.62066 8.01842 8.13911 8.70305 9.25843 9.62894 10.15257 10.84042 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.021581 B = 0.004368 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.116078 B = 6408.839630 C = 7205.621520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.089 3.911 4 H 0.068 0.932 5 C -0.137 4.137 6 C 0.067 3.933 7 N -0.496 5.496 8 C 0.040 3.960 9 C 0.453 3.547 10 O -0.574 6.574 11 N -0.567 5.567 12 C -0.296 4.296 13 H 0.102 0.898 14 C 0.021 3.979 15 N -0.904 5.904 16 Si 0.931 3.069 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.274 1.274 20 C 0.102 3.898 21 H 0.079 0.921 22 C 0.474 3.526 23 O -0.482 6.482 24 O -0.521 6.521 25 C -0.100 4.100 26 H 0.083 0.917 27 H 0.039 0.961 28 H 0.041 0.959 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.100 0.900 32 H 0.036 0.964 33 H 0.087 0.913 34 H 0.050 0.950 35 H 0.391 0.609 36 H 0.271 0.729 37 H 0.408 0.592 38 H 0.081 0.919 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.442 -1.555 14.750 20.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C 0.032 3.968 4 H 0.086 0.914 5 C -0.175 4.175 6 C -0.059 4.059 7 N -0.222 5.222 8 C -0.091 4.091 9 C 0.238 3.762 10 O -0.458 6.458 11 N -0.204 5.204 12 C -0.426 4.426 13 H 0.120 0.880 14 C -0.180 4.180 15 N -0.546 5.546 16 Si 0.758 3.242 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.200 1.200 20 C -0.008 4.008 21 H 0.097 0.903 22 C 0.313 3.687 23 O -0.367 6.367 24 O -0.333 6.333 25 C -0.138 4.138 26 H 0.102 0.898 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.105 0.895 30 H 0.088 0.912 31 H 0.118 0.882 32 H 0.054 0.946 33 H 0.105 0.895 34 H 0.068 0.932 35 H 0.224 0.776 36 H 0.081 0.919 37 H 0.267 0.733 38 H 0.099 0.901 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.477 -0.396 14.209 19.588 hybrid contribution 0.803 -0.797 -0.399 1.199 sum -12.674 -1.193 13.810 18.782 Atomic orbital electron populations 1.22758 0.81304 1.02588 0.99822 1.87924 1.19430 1.27823 1.95069 1.22185 0.93765 0.84670 0.96229 0.91416 1.22086 0.99269 1.01132 0.94991 1.22065 0.86866 0.97872 0.99138 1.61347 1.08733 1.53426 0.98743 1.21975 0.95724 0.94675 0.96768 1.19547 0.83835 0.87735 0.85082 1.90493 1.58582 1.21920 1.74763 1.41830 1.35917 1.20332 1.22274 1.19642 1.19989 1.03560 0.99388 0.87986 1.25242 0.96856 0.96235 0.99661 1.69614 1.29240 1.16569 1.39154 0.85924 0.78311 0.79106 0.80891 1.19928 1.21041 1.19973 1.21080 0.89054 1.00210 0.90454 0.90313 1.23413 0.90362 0.77426 0.77459 1.90803 1.45944 1.38309 1.61638 1.84539 1.41914 1.57069 1.49790 1.21653 0.92984 1.00782 0.98352 0.89820 0.94242 0.94007 0.89548 0.91233 0.88187 0.94573 0.89492 0.93161 0.77598 0.91925 0.73339 0.90072 0.88840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.82 101.05 1.09 1.35 16 2 O -0.38 -4.31 9.21 -35.23 -0.32 -4.63 16 3 C 0.09 0.97 2.94 -26.60 -0.08 0.89 16 4 H 0.07 0.59 7.79 -51.93 -0.40 0.18 16 5 C -0.14 -1.75 5.79 -26.64 -0.15 -1.90 16 6 C 0.07 1.10 4.98 -3.83 -0.02 1.08 16 7 N -0.50 -8.81 3.88 -229.51 -0.89 -9.70 16 8 C 0.04 0.78 5.09 -4.97 -0.03 0.76 16 9 C 0.45 11.32 7.47 -10.98 -0.08 11.24 16 10 O -0.57 -16.01 14.45 5.54 0.08 -15.93 16 11 N -0.57 -15.08 5.29 -10.96 -0.06 -15.14 16 12 C -0.30 -8.53 9.68 -14.93 -0.14 -8.67 16 13 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 14 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 15 N -0.90 -25.33 13.05 55.50 0.72 -24.61 16 16 Si 0.93 21.62 29.55 -169.99 -5.02 16.59 16 17 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 20 C 0.10 1.47 2.21 -68.88 -0.15 1.32 16 21 H 0.08 1.10 7.76 -51.93 -0.40 0.69 16 22 C 0.47 7.05 6.18 36.00 0.22 7.27 16 23 O -0.48 -9.10 16.14 -18.75 -0.30 -9.40 16 24 O -0.52 -5.85 13.42 -39.27 -0.53 -6.37 16 25 C -0.10 -1.17 5.08 -26.65 -0.14 -1.31 16 26 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.04 0.26 8.09 -51.93 -0.42 -0.16 16 28 H 0.04 0.31 7.86 -51.93 -0.41 -0.09 16 29 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.07 0.77 7.86 -51.93 -0.41 0.36 16 31 H 0.10 1.93 6.38 -51.93 -0.33 1.60 16 32 H 0.04 0.56 7.76 -51.93 -0.40 0.15 16 33 H 0.09 1.71 5.68 -51.93 -0.30 1.42 16 34 H 0.05 0.90 8.05 -51.93 -0.42 0.48 16 35 H 0.39 10.03 7.90 -40.82 -0.32 9.70 16 36 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 37 H 0.41 2.87 9.10 45.56 0.41 3.28 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 324.32 15.07 4.89 4.89 Total: -1.00 -34.90 324.32 -5.60 -40.51 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -4.60 Total: 11.29 kcal Atomic # 6 Polarization: 12.09 SS G_CDS: 0.43 Total: 12.52 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: -0.22 Total: -49.45 kcal Atomic # 8 Polarization: -35.27 SS G_CDS: -1.07 Total: -36.34 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.90 -5.60 -40.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599124049.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.170 kcal (2) G-P(sol) polarization free energy of solvation -34.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds