Wall clock time and date at job start Tue Mar 31 2020 02:25:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31619 * 1
3 3 Si 1.86804 * 119.99559 * 2 1
4 4 H 1.48497 * 109.46725 * 240.00034 * 3 2 1
5 5 H 1.48498 * 109.47172 * 359.97438 * 3 2 1
6 6 H 1.48501 * 109.46920 * 120.00247 * 3 2 1
7 7 C 1.38801 * 120.00176 * 180.02562 * 2 1 3
8 8 H 1.08006 * 120.00073 * 179.97438 * 7 2 1
9 9 N 1.36936 * 120.00093 * 0.02562 * 7 2 1
10 10 C 1.46505 * 119.99992 * 180.02562 * 9 7 2
11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7
12 12 N 1.46500 * 109.47473 * 179.97438 * 11 10 9
13 13 C 1.46500 * 120.00115 * 270.00004 * 12 11 10
14 14 C 1.53002 * 109.46919 * 89.99958 * 13 12 11
15 15 O 1.42901 * 109.47108 * 64.99791 * 14 13 12
16 16 C 1.34780 * 119.99743 * 90.00017 * 12 11 10
17 17 O 1.21278 * 120.00148 * 0.02562 * 16 12 11
18 18 C 1.50701 * 119.99973 * 180.02562 * 16 12 11
19 19 H 1.08996 * 115.54729 * 325.72178 * 18 16 12
20 20 C 1.52995 * 117.49767 * 111.38641 * 18 16 12
21 21 C 1.52991 * 117.50180 * 180.02562 * 18 16 12
22 22 H 1.09004 * 117.49721 * 359.97438 * 21 18 16
23 23 C 1.50699 * 117.50148 * 145.01926 * 21 18 16
24 24 O 1.20818 * 120.00057 * 0.02562 * 23 21 18
25 25 O 1.34226 * 120.00007 * 179.97438 * 23 21 18
26 26 H 0.97001 * 120.00803 * 359.97438 * 1 2 3
27 27 H 0.96996 * 120.00401 * 359.97438 * 9 7 2
28 28 H 1.09002 * 109.47068 * 299.99856 * 10 9 7
29 29 H 1.09001 * 109.47372 * 59.99943 * 10 9 7
30 30 H 1.09002 * 109.47153 * 300.00008 * 11 10 9
31 31 H 1.08998 * 109.47533 * 59.99637 * 11 10 9
32 32 H 1.08992 * 109.46978 * 209.99640 * 13 12 11
33 33 H 1.08993 * 109.47313 * 330.00169 * 13 12 11
34 34 H 1.08998 * 109.47251 * 185.00536 * 14 13 12
35 35 H 1.09007 * 109.47104 * 305.00111 * 14 13 12
36 36 H 0.96706 * 113.99779 * 179.97438 * 15 14 13
37 37 H 1.09000 * 117.50134 * 214.97843 * 20 18 16
38 38 H 1.09003 * 117.50138 * 359.97438 * 20 18 16
39 39 H 0.96698 * 117.00248 * 179.97438 * 25 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6178 0.0000
4 1 3.1038 1.6965 -1.2125
5 1 1.2850 2.7465 -0.0006
6 1 3.1039 1.6965 1.2125
7 6 2.0102 -1.2020 -0.0005
8 1 3.0903 -1.2020 -0.0010
9 7 1.3256 -2.3880 -0.0016
10 6 2.0582 -3.6567 -0.0016
11 6 1.0640 -4.8197 -0.0022
12 7 1.7965 -6.0884 -0.0029
13 6 2.1629 -6.7221 -1.2719
14 6 3.5396 -6.2214 -1.7132
15 8 4.5271 -6.6545 -0.7754
16 6 2.1334 -6.6726 1.1641
17 8 1.8297 -6.1482 2.2147
18 6 2.8874 -7.9774 1.1635
19 1 2.6433 -8.6610 0.3505
20 6 4.3348 -7.9570 1.6588
21 6 3.2400 -8.5902 2.5203
22 1 2.9270 -8.0493 3.4134
23 6 3.2233 -10.0930 2.6306
24 8 2.9391 -10.7662 1.6684
25 8 3.5251 -10.6837 3.7974
26 1 -0.4851 0.8400 0.0004
27 1 0.3556 -2.3881 -0.0016
28 1 2.6855 -3.7140 -0.8911
29 1 2.6842 -3.7148 0.8888
30 1 0.4370 -4.7622 0.8875
31 1 0.4377 -4.7618 -0.8924
32 1 2.1941 -7.8038 -1.1420
33 1 1.4235 -6.4685 -2.0314
34 1 3.7736 -6.6234 -2.6990
35 1 3.5333 -5.1323 -1.7571
36 1 5.4263 -6.3727 -0.9927
37 1 5.0429 -8.6276 1.1719
38 1 4.7419 -6.9998 1.9847
39 1 3.5005 -11.6502 3.8196
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001601074892.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:25:14
Heat of formation + Delta-G solvation = -127.421345 kcal
Electronic energy + Delta-G solvation = -23058.104690 eV
Core-core repulsion = 19388.622930 eV
Total energy + Delta-G solvation = -3669.481760 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 286.141 amu
Computer time = 1.95 seconds
Orbital eigenvalues (eV)
-40.84527 -39.82211 -37.31851 -36.74868 -36.00804 -35.30186 -34.27364 -31.46696
-29.43843 -28.01321 -25.94660 -24.43970 -23.27695 -22.64268 -21.43937 -20.78716
-18.90501 -18.46801 -17.82321 -17.51008 -17.08019 -16.34569 -15.93586 -15.72701
-15.17492 -14.63942 -14.50080 -14.18441 -13.91703 -13.61961 -13.36925 -13.22952
-12.88458 -12.75981 -12.37699 -12.12392 -11.84290 -11.73153 -11.14865 -11.05583
-10.91916 -10.86877 -10.73214 -10.70236 -10.67021 -10.14177 -10.00576 -9.76295
-9.59873 -8.85493 -8.52403 -6.92564 -5.75711 -3.05050 1.83221 2.51713
2.67168 3.14888 3.44614 3.48968 3.50270 3.72523 4.16720 4.44136
4.48974 4.61547 4.68840 4.88837 5.02293 5.07191 5.13336 5.29803
5.44752 5.48251 5.54851 5.64900 5.70312 5.78336 5.83629 5.87561
6.04990 6.14248 6.21725 6.59133 6.76611 6.92758 7.50161 7.54022
7.65488 7.69349 8.32700 8.42967 9.53520 10.10020 10.44943 11.47131
Molecular weight = 286.14amu
Principal moments of inertia in cm(-1)
A = 0.026543 B = 0.003434 C = 0.003316
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1054.630799 B = 8151.561223 C = 8441.680742
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.934 5.934
2 C -0.013 4.013
3 Si 0.909 3.091
4 H -0.286 1.286
5 H -0.291 1.291
6 H -0.285 1.285
7 C -0.239 4.239
8 H 0.069 0.931
9 N -0.731 5.731
10 C 0.145 3.855
11 C 0.106 3.894
12 N -0.598 5.598
13 C 0.109 3.891
14 C 0.052 3.948
15 O -0.564 6.564
16 C 0.551 3.449
17 O -0.535 6.535
18 C -0.135 4.135
19 H 0.133 0.867
20 C -0.083 4.083
21 C -0.158 4.158
22 H 0.147 0.853
23 C 0.515 3.485
24 O -0.518 6.518
25 O -0.510 6.510
26 H 0.256 0.744
27 H 0.384 0.616
28 H 0.018 0.982
29 H 0.023 0.977
30 H 0.086 0.914
31 H 0.077 0.923
32 H 0.085 0.915
33 H 0.095 0.905
34 H 0.052 0.948
35 H 0.060 0.940
36 H 0.376 0.624
37 H 0.108 0.892
38 H 0.115 0.885
39 H 0.410 0.590
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.817 -21.550 -1.184 23.314
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.582 5.582
2 C -0.209 4.209
3 Si 0.740 3.260
4 H -0.213 1.213
5 H -0.216 1.216
6 H -0.212 1.212
7 C -0.370 4.370
8 H 0.087 0.913
9 N -0.376 5.376
10 C 0.016 3.984
11 C -0.016 4.016
12 N -0.330 5.330
13 C -0.015 4.015
14 C -0.027 4.027
15 O -0.369 6.369
16 C 0.339 3.661
17 O -0.411 6.411
18 C -0.156 4.156
19 H 0.151 0.849
20 C -0.121 4.121
21 C -0.178 4.178
22 H 0.165 0.835
23 C 0.358 3.642
24 O -0.407 6.407
25 O -0.322 6.322
26 H 0.066 0.934
27 H 0.217 0.783
28 H 0.036 0.964
29 H 0.040 0.960
30 H 0.104 0.896
31 H 0.095 0.905
32 H 0.104 0.896
33 H 0.113 0.887
34 H 0.070 0.930
35 H 0.079 0.921
36 H 0.223 0.777
37 H 0.126 0.874
38 H 0.133 0.867
39 H 0.269 0.731
Dipole moment (debyes) X Y Z Total
from point charges 8.156 -21.150 -0.618 22.677
hybrid contribution 0.562 0.551 -0.460 0.912
sum 8.718 -20.599 -1.077 22.394
Atomic orbital electron populations
1.69647 1.05110 1.25822 1.57627 1.24743 0.95545 0.97693 1.02940
0.86245 0.78512 0.83454 0.77837 1.21297 1.21636 1.21213 1.19143
0.90935 0.84017 1.42908 0.91319 1.42227 1.05862 0.99835 1.89640
1.20965 0.93801 0.85559 0.98031 1.21772 0.94745 0.81778 1.03329
1.47663 1.56690 1.23243 1.05403 1.21740 0.94934 0.98408 0.86382
1.22771 0.88926 0.99616 0.91415 1.86521 1.19441 1.79322 1.51665
1.19358 0.78489 0.84817 0.83453 1.90735 1.54305 1.65124 1.30950
1.22125 0.99981 0.97107 0.96378 0.84929 1.22817 0.89825 1.02244
0.97191 1.21775 1.09122 0.88303 0.98570 0.83541 1.22307 0.71786
0.90454 0.79683 1.90707 1.45052 1.65979 1.38923 1.84525 1.81932
1.28521 1.37185 0.93413 0.78283 0.96426 0.95951 0.89607 0.90454
0.89645 0.88706 0.93005 0.92137 0.77718 0.87378 0.86662 0.73092
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -28.55 13.06 55.49 0.72 -27.83 16
2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16
3 Si 0.91 22.63 29.55 -169.99 -5.02 17.60 16
4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16
5 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16
6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16
7 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16
8 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16
9 N -0.73 -19.00 5.60 -59.91 -0.34 -19.34 16
10 C 0.14 3.03 6.56 -4.04 -0.03 3.00 16
11 C 0.11 1.82 5.56 -4.04 -0.02 1.80 16
12 N -0.60 -8.52 2.46 -173.69 -0.43 -8.94 16
13 C 0.11 1.11 5.82 -4.04 -0.02 1.09 16
14 C 0.05 0.48 7.39 37.16 0.27 0.76 16
15 O -0.56 -5.11 10.22 -35.23 -0.36 -5.47 16
16 C 0.55 8.56 7.16 -10.98 -0.08 8.48 16
17 O -0.53 -10.46 15.84 5.56 0.09 -10.37 16
18 C -0.13 -1.63 3.80 -91.78 -0.35 -1.98 16
19 H 0.13 1.51 5.97 -51.93 -0.31 1.20 16
20 C -0.08 -0.84 8.09 -26.72 -0.22 -1.06 16
21 C -0.16 -1.80 5.81 -91.76 -0.53 -2.33 16
22 H 0.15 1.79 7.67 -51.93 -0.40 1.39 16
23 C 0.51 5.60 8.11 36.00 0.29 5.90 16
24 O -0.52 -6.80 17.02 -18.74 -0.32 -7.12 16
25 O -0.51 -4.23 13.42 -39.25 -0.53 -4.76 16
26 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16
27 H 0.38 10.39 7.67 -40.82 -0.31 10.07 16
28 H 0.02 0.36 6.14 -51.93 -0.32 0.04 16
29 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16
30 H 0.09 1.65 7.42 -51.93 -0.39 1.27 16
31 H 0.08 1.19 7.89 -51.93 -0.41 0.78 16
32 H 0.09 0.77 5.99 -51.93 -0.31 0.45 16
33 H 0.09 0.82 7.89 -51.93 -0.41 0.41 16
34 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16
35 H 0.06 0.70 6.11 -51.93 -0.32 0.38 16
36 H 0.38 2.10 9.12 45.56 0.42 2.52 16
37 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16
38 H 0.12 1.22 8.14 -51.93 -0.42 0.79 16
39 H 0.41 1.48 9.10 45.56 0.41 1.90 16
LS Contribution 331.98 15.07 5.00 5.00
Total: -1.00 -36.91 331.98 -5.69 -42.59
By element:
Atomic # 1 Polarization: 14.02 SS G_CDS: -3.58 Total: 10.44 kcal
Atomic # 6 Polarization: 9.13 SS G_CDS: -0.93 Total: 8.20 kcal
Atomic # 7 Polarization: -56.08 SS G_CDS: -0.04 Total: -56.11 kcal
Atomic # 8 Polarization: -26.61 SS G_CDS: -1.12 Total: -27.73 kcal
Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.60 kcal
Total LS contribution 5.00 Total: 5.00 kcal
Total: -36.91 -5.69 -42.59 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001601074892.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -84.827 kcal
(2) G-P(sol) polarization free energy of solvation -36.908 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.735 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.686 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.594 kcal
(6) G-S(sol) free energy of system = (1) + (5) -127.421 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.95 seconds