Wall clock time and date at job start Tue Mar 31 2020 02:25:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31619 * 1
3 3 Si 1.86804 * 119.99559 * 2 1
4 4 H 1.48497 * 109.46725 * 240.00034 * 3 2 1
5 5 H 1.48498 * 109.47172 * 359.97438 * 3 2 1
6 6 H 1.48501 * 109.46920 * 120.00247 * 3 2 1
7 7 C 1.38801 * 120.00176 * 180.02562 * 2 1 3
8 8 H 1.08006 * 120.00073 * 179.97438 * 7 2 1
9 9 N 1.36936 * 120.00093 * 0.02562 * 7 2 1
10 10 C 1.46505 * 119.99992 * 180.02562 * 9 7 2
11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7
12 12 N 1.46500 * 109.47473 * 179.97438 * 11 10 9
13 13 C 1.46500 * 120.00115 * 270.00004 * 12 11 10
14 14 C 1.53002 * 109.46919 * 89.99958 * 13 12 11
15 15 O 1.42901 * 109.47108 * 64.99791 * 14 13 12
16 16 C 1.34780 * 119.99743 * 90.00017 * 12 11 10
17 17 O 1.21278 * 120.00148 * 0.02562 * 16 12 11
18 18 C 1.50701 * 119.99973 * 180.02562 * 16 12 11
19 19 H 1.08996 * 115.54729 * 325.72178 * 18 16 12
20 20 C 1.52995 * 117.49767 * 111.38641 * 18 16 12
21 21 C 1.52991 * 117.50180 * 180.02562 * 18 16 12
22 22 H 1.09004 * 117.49721 * 359.97438 * 21 18 16
23 23 C 1.50699 * 117.50148 * 145.01926 * 21 18 16
24 24 O 1.20818 * 120.00057 * 0.02562 * 23 21 18
25 25 O 1.34226 * 120.00007 * 179.97438 * 23 21 18
26 26 H 0.97001 * 120.00803 * 359.97438 * 1 2 3
27 27 H 0.96996 * 120.00401 * 359.97438 * 9 7 2
28 28 H 1.09002 * 109.47068 * 299.99856 * 10 9 7
29 29 H 1.09001 * 109.47372 * 59.99943 * 10 9 7
30 30 H 1.09002 * 109.47153 * 300.00008 * 11 10 9
31 31 H 1.08998 * 109.47533 * 59.99637 * 11 10 9
32 32 H 1.08992 * 109.46978 * 209.99640 * 13 12 11
33 33 H 1.08993 * 109.47313 * 330.00169 * 13 12 11
34 34 H 1.08998 * 109.47251 * 185.00536 * 14 13 12
35 35 H 1.09007 * 109.47104 * 305.00111 * 14 13 12
36 36 H 0.96706 * 113.99779 * 179.97438 * 15 14 13
37 37 H 1.09000 * 117.50134 * 214.97843 * 20 18 16
38 38 H 1.09003 * 117.50138 * 359.97438 * 20 18 16
39 39 H 0.96698 * 117.00248 * 179.97438 * 25 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6178 0.0000
4 1 3.1038 1.6965 -1.2125
5 1 1.2850 2.7465 -0.0006
6 1 3.1039 1.6965 1.2125
7 6 2.0102 -1.2020 -0.0005
8 1 3.0903 -1.2020 -0.0010
9 7 1.3256 -2.3880 -0.0016
10 6 2.0582 -3.6567 -0.0016
11 6 1.0640 -4.8197 -0.0022
12 7 1.7965 -6.0884 -0.0029
13 6 2.1629 -6.7221 -1.2719
14 6 3.5396 -6.2214 -1.7132
15 8 4.5271 -6.6545 -0.7754
16 6 2.1334 -6.6726 1.1641
17 8 1.8297 -6.1482 2.2147
18 6 2.8874 -7.9774 1.1635
19 1 2.6433 -8.6610 0.3505
20 6 4.3348 -7.9570 1.6588
21 6 3.2400 -8.5902 2.5203
22 1 2.9270 -8.0493 3.4134
23 6 3.2233 -10.0930 2.6306
24 8 2.9391 -10.7662 1.6684
25 8 3.5251 -10.6837 3.7974
26 1 -0.4851 0.8400 0.0004
27 1 0.3556 -2.3881 -0.0016
28 1 2.6855 -3.7140 -0.8911
29 1 2.6842 -3.7148 0.8888
30 1 0.4370 -4.7622 0.8875
31 1 0.4377 -4.7618 -0.8924
32 1 2.1941 -7.8038 -1.1420
33 1 1.4235 -6.4685 -2.0314
34 1 3.7736 -6.6234 -2.6990
35 1 3.5333 -5.1323 -1.7571
36 1 5.4263 -6.3727 -0.9927
37 1 5.0429 -8.6276 1.1719
38 1 4.7419 -6.9998 1.9847
39 1 3.5005 -11.6502 3.8196
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001601074892.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:25:11
Heat of formation + Delta-G solvation = -157.496157 kcal
Electronic energy + Delta-G solvation = -23059.408832 eV
Core-core repulsion = 19388.622930 eV
Total energy + Delta-G solvation = -3670.785902 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 286.141 amu
Computer time = 2.12 seconds
Orbital eigenvalues (eV)
-41.79217 -40.87043 -38.26871 -37.62122 -37.04512 -36.55719 -35.83935 -33.40613
-30.66054 -29.40948 -27.08277 -25.85770 -24.69857 -23.59724 -22.98032 -21.72669
-19.96910 -19.48128 -19.14475 -18.66055 -18.21133 -17.30303 -17.10666 -16.74935
-16.56281 -16.24084 -15.59383 -15.27042 -15.20562 -15.10695 -14.78081 -14.68519
-14.18994 -13.72204 -13.24641 -13.21568 -13.08573 -12.88148 -12.77319 -12.61784
-12.33804 -12.28129 -12.11586 -11.88354 -11.80943 -11.66232 -11.58370 -11.00942
-10.86374 -10.67654 -9.74960 -9.05968 -7.97746 -5.28608 0.98495 1.44821
1.46483 1.50129 1.56110 1.68619 2.17780 2.55846 2.80569 3.35212
3.39783 3.53237 3.61715 3.81906 4.00823 4.05105 4.15132 4.17295
4.30729 4.34029 4.38544 4.55360 4.64552 4.70969 4.74163 4.87756
4.95700 5.00574 5.05125 5.21138 5.42084 5.53987 5.54939 6.23488
6.36126 6.97532 7.02956 7.13504 7.29663 8.01758 8.26860 9.25459
Molecular weight = 286.14amu
Principal moments of inertia in cm(-1)
A = 0.026543 B = 0.003434 C = 0.003316
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1054.630799 B = 8151.561223 C = 8441.680742
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.968 5.968
2 C -0.073 4.073
3 Si 0.977 3.023
4 H -0.272 1.272
5 H -0.293 1.293
6 H -0.280 1.280
7 C -0.251 4.251
8 H 0.073 0.927
9 N -0.744 5.744
10 C 0.154 3.846
11 C 0.119 3.881
12 N -0.593 5.593
13 C 0.099 3.901
14 C 0.057 3.943
15 O -0.576 6.576
16 C 0.544 3.456
17 O -0.586 6.586
18 C -0.136 4.136
19 H 0.146 0.854
20 C -0.061 4.061
21 C -0.165 4.165
22 H 0.133 0.867
23 C 0.525 3.475
24 O -0.541 6.541
25 O -0.506 6.506
26 H 0.253 0.747
27 H 0.375 0.625
28 H 0.035 0.965
29 H -0.004 1.004
30 H 0.058 0.942
31 H 0.099 0.901
32 H 0.104 0.896
33 H 0.114 0.886
34 H 0.084 0.916
35 H 0.035 0.965
36 H 0.392 0.608
37 H 0.133 0.867
38 H 0.109 0.891
39 H 0.432 0.568
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.491 -22.847 -2.338 25.249
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.618 5.618
2 C -0.265 4.265
3 Si 0.805 3.195
4 H -0.198 1.198
5 H -0.219 1.219
6 H -0.207 1.207
7 C -0.383 4.383
8 H 0.091 0.909
9 N -0.387 5.387
10 C 0.026 3.974
11 C -0.004 4.004
12 N -0.324 5.324
13 C -0.022 4.022
14 C -0.022 4.022
15 O -0.383 6.383
16 C 0.334 3.666
17 O -0.467 6.467
18 C -0.157 4.157
19 H 0.164 0.836
20 C -0.098 4.098
21 C -0.185 4.185
22 H 0.151 0.849
23 C 0.369 3.631
24 O -0.432 6.432
25 O -0.319 6.319
26 H 0.062 0.938
27 H 0.207 0.793
28 H 0.053 0.947
29 H 0.014 0.986
30 H 0.077 0.923
31 H 0.117 0.883
32 H 0.122 0.878
33 H 0.132 0.868
34 H 0.102 0.898
35 H 0.053 0.947
36 H 0.241 0.759
37 H 0.151 0.849
38 H 0.127 0.873
39 H 0.294 0.706
Dipole moment (debyes) X Y Z Total
from point charges 9.887 -22.510 -1.796 24.651
hybrid contribution 0.085 0.867 -0.057 0.873
sum 9.972 -21.643 -1.853 23.901
Atomic orbital electron populations
1.69809 1.06655 1.26401 1.58980 1.25617 0.96471 1.01228 1.03186
0.85164 0.77233 0.78785 0.78280 1.19818 1.21863 1.20659 1.19541
0.91392 0.85213 1.42109 0.90892 1.42422 1.05673 1.01038 1.89580
1.20991 0.94129 0.85028 0.97218 1.21432 0.93883 0.82103 1.03020
1.47729 1.55853 1.21943 1.06900 1.22139 0.96134 0.99220 0.84747
1.22676 0.88566 0.98064 0.92892 1.86477 1.20510 1.79315 1.52045
1.20015 0.77956 0.85720 0.82927 1.90707 1.56390 1.66762 1.32837
1.22003 1.01020 0.95382 0.97281 0.83647 1.22883 0.89042 1.02177
0.95713 1.21751 1.09918 0.88987 0.97814 0.84921 1.22044 0.71223
0.89987 0.79865 1.90701 1.46343 1.66345 1.39811 1.84476 1.81164
1.30558 1.35742 0.93784 0.79319 0.94702 0.98622 0.92342 0.88297
0.87784 0.86802 0.89840 0.94690 0.75925 0.84910 0.87277 0.70567
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.97 -60.07 13.06 21.65 0.28 -59.79 16
2 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16
3 Si 0.98 46.54 29.55 68.60 2.03 48.57 16
4 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16
5 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16
6 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16
7 C -0.25 -14.45 9.99 84.03 0.84 -13.61 16
8 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16
9 N -0.74 -39.40 5.60 -343.45 -1.92 -41.32 16
10 C 0.15 6.52 6.56 86.38 0.57 7.09 16
11 C 0.12 4.13 5.56 86.38 0.48 4.61 16
12 N -0.59 -16.56 2.46 -821.83 -2.02 -18.58 16
13 C 0.10 1.79 5.82 86.38 0.50 2.29 16
14 C 0.06 0.92 7.39 71.98 0.53 1.45 16
15 O -0.58 -9.01 10.22 -148.98 -1.52 -10.53 16
16 C 0.54 16.95 7.16 87.66 0.63 17.58 16
17 O -0.59 -23.91 15.84 -3.02 -0.05 -23.96 16
18 C -0.14 -3.11 3.80 -11.54 -0.04 -3.16 16
19 H 0.15 2.97 5.97 -2.39 -0.01 2.96 16
20 C -0.06 -1.12 8.09 30.60 0.25 -0.87 16
21 C -0.17 -3.61 5.81 -11.53 -0.07 -3.67 16
22 H 0.13 3.31 7.67 -2.38 -0.02 3.29 16
23 C 0.52 10.55 8.11 71.24 0.58 11.13 16
24 O -0.54 -13.17 17.02 21.99 0.37 -12.80 16
25 O -0.51 -7.38 13.42 -51.38 -0.69 -8.07 16
26 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16
27 H 0.37 20.86 7.67 -92.71 -0.71 20.15 16
28 H 0.04 1.39 6.14 -2.39 -0.01 1.37 16
29 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16
30 H 0.06 2.36 7.42 -2.39 -0.02 2.34 16
31 H 0.10 2.99 7.89 -2.39 -0.02 2.97 16
32 H 0.10 1.54 5.99 -2.39 -0.01 1.53 16
33 H 0.11 1.63 7.89 -2.39 -0.02 1.61 16
34 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16
35 H 0.03 0.75 6.11 -2.38 -0.01 0.73 16
36 H 0.39 3.38 9.12 -74.05 -0.68 2.70 16
37 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16
38 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16
39 H 0.43 2.09 9.10 -74.06 -0.67 1.41 16
Total: -1.00 -80.70 331.98 0.27 -80.43
By element:
Atomic # 1 Polarization: 27.92 SS G_CDS: -0.94 Total: 26.98 kcal
Atomic # 6 Polarization: 14.33 SS G_CDS: 4.73 Total: 19.06 kcal
Atomic # 7 Polarization: -116.03 SS G_CDS: -3.66 Total: -119.69 kcal
Atomic # 8 Polarization: -53.46 SS G_CDS: -1.89 Total: -55.35 kcal
Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal
Total: -80.70 0.27 -80.43 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001601074892.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -77.068 kcal
(2) G-P(sol) polarization free energy of solvation -80.698 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.765 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.269 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.429 kcal
(6) G-S(sol) free energy of system = (1) + (5) -157.496 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.12 seconds