Wall clock time and date at job start Tue Mar 31 2020 02:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99610 * 2 1 4 4 H 1.48501 * 109.47327 * 264.99661 * 3 2 1 5 5 H 1.48499 * 109.47346 * 25.00029 * 3 2 1 6 6 H 1.48501 * 109.46932 * 144.99719 * 3 2 1 7 7 C 1.37874 * 120.00246 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99887 * 185.06090 * 7 2 1 9 9 C 1.50696 * 119.99830 * 5.06163 * 7 2 1 10 10 O 1.42901 * 110.87742 * 60.75230 * 9 7 2 11 11 C 1.55144 * 110.99346 * 296.90183 * 9 7 2 12 12 C 1.54317 * 103.02010 * 206.25433 * 11 9 7 13 13 N 1.47441 * 107.23391 * 22.28496 * 12 11 9 14 14 C 1.46896 * 111.00144 * 123.25393 * 13 12 11 15 15 C 1.50704 * 109.47139 * 69.87505 * 14 13 12 16 16 O 1.21279 * 119.99686 * 359.97438 * 15 14 13 17 17 N 1.34780 * 120.00217 * 180.27906 * 15 14 13 18 18 C 1.46496 * 119.99894 * 179.72219 * 17 15 14 19 19 C 1.53002 * 109.46757 * 179.97438 * 18 17 15 20 20 C 1.50705 * 109.47154 * 180.02562 * 19 18 17 21 21 O 1.20830 * 119.99648 * 0.02562 * 20 19 18 22 22 O 1.34223 * 120.00085 * 179.97438 * 20 19 18 23 23 C 1.47846 * 108.56687 * 0.98686 * 13 12 11 24 24 H 0.97002 * 119.99969 * 359.97438 * 1 2 3 25 25 H 0.96709 * 113.99963 * 290.77146 * 10 9 7 26 26 H 1.09006 * 110.69914 * 87.87340 * 11 9 7 27 27 H 1.08994 * 110.70663 * 324.64327 * 11 9 7 28 28 H 1.09001 * 109.88987 * 262.87688 * 12 11 9 29 29 H 1.09002 * 109.88539 * 141.69108 * 12 11 9 30 30 H 1.09002 * 109.47471 * 309.87692 * 14 13 12 31 31 H 1.09004 * 109.47906 * 189.87540 * 14 13 12 32 32 H 0.97000 * 119.99941 * 359.72226 * 17 15 14 33 33 H 1.08994 * 109.47484 * 300.00021 * 18 17 15 34 34 H 1.08996 * 109.46891 * 60.00136 * 18 17 15 35 35 H 1.09003 * 109.47206 * 300.00187 * 19 18 17 36 36 H 1.09003 * 109.47214 * 60.00166 * 19 18 17 37 37 H 0.96702 * 116.99650 * 179.97438 * 22 20 19 38 38 H 1.09004 * 110.37455 * 94.73155 * 23 13 12 39 39 H 1.09000 * 110.37355 * 217.07230 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6024 1.9855 -1.3947 5 1 1.3977 2.6809 0.5917 6 1 3.4898 1.4731 0.8031 7 6 2.0046 -1.1940 0.0005 8 1 3.0815 -1.1957 0.0830 9 6 1.2556 -2.4966 -0.1140 10 8 0.5276 -2.5591 -1.3421 11 6 0.3142 -2.7051 1.1014 12 6 0.1889 -4.2409 1.1846 13 7 1.3640 -4.8127 0.5018 14 6 2.1123 -5.7035 1.3986 15 6 1.3068 -6.9513 1.6541 16 8 0.2166 -7.0851 1.1401 17 7 1.7955 -7.9159 2.4587 18 6 1.0098 -9.1261 2.7119 19 6 1.7871 -10.0517 3.6500 20 6 0.9792 -11.2971 3.9100 21 8 -0.1067 -11.4308 3.3971 22 8 1.4663 -12.2582 4.7104 23 6 2.2168 -3.7035 0.0241 24 1 -0.4850 0.8401 0.0004 25 1 -0.2208 -1.9482 -1.3873 26 1 -0.6585 -2.2485 0.9181 27 1 0.7637 -2.3052 2.0102 28 1 -0.7243 -4.5661 0.6862 29 1 0.1767 -4.5559 2.2281 30 1 2.3011 -5.1932 2.3431 31 1 3.0615 -5.9723 0.9349 32 1 2.6673 -7.8087 2.8702 33 1 0.0610 -8.8534 3.1739 34 1 0.8205 -9.6401 1.7696 35 1 2.7357 -10.3244 3.1875 36 1 1.9768 -9.5379 4.5924 37 1 0.9115 -13.0383 4.8474 38 1 2.9981 -3.4848 0.7521 39 1 2.6559 -3.9514 -0.9422 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608181402.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:26:20 Heat of formation + Delta-G solvation = -200.566381 kcal Electronic energy + Delta-G solvation = -22568.939817 eV Core-core repulsion = 18896.286251 eV Total energy + Delta-G solvation = -3672.653567 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 286.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.37233 -40.89173 -39.59174 -37.24958 -36.51162 -36.05486 -34.16910 -32.65772 -31.53374 -29.89913 -28.17717 -26.26081 -25.05093 -22.25679 -22.10375 -21.40778 -21.16932 -19.11608 -18.97899 -18.05416 -17.46881 -17.41781 -17.11510 -16.85089 -16.74937 -16.19344 -15.80968 -15.64021 -14.94970 -14.84889 -14.28122 -14.11427 -13.92090 -13.80186 -13.41734 -13.10045 -12.97904 -12.86288 -12.81836 -12.65777 -12.54369 -12.43921 -12.20537 -12.16649 -11.72951 -11.68841 -11.10669 -10.84565 -10.58376 -10.13600 -10.05211 -9.12348 -8.17737 -6.33322 1.19483 1.42992 1.45692 1.53556 1.68938 1.73169 2.40032 2.50385 3.05938 3.23669 3.55277 3.86813 4.00346 4.01132 4.13319 4.21622 4.34017 4.40497 4.44426 4.52455 4.57993 4.75687 4.77784 4.90584 4.93488 5.11174 5.28038 5.39483 5.46740 5.56666 5.62666 5.81891 5.96591 6.15706 6.25870 6.63853 6.72910 6.97169 7.34877 7.37884 7.44222 8.87648 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.048517 B = 0.002721 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.979336 B =10288.672227 C =10456.913962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.027 3.973 3 Si 0.961 3.039 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.556 4.556 8 H 0.062 0.938 9 C 0.231 3.769 10 O -0.589 6.589 11 C -0.136 4.136 12 C 0.069 3.931 13 N -0.530 5.530 14 C 0.031 3.969 15 C 0.513 3.487 16 O -0.568 6.568 17 N -0.715 5.715 18 C 0.132 3.868 19 C -0.113 4.113 20 C 0.488 3.512 21 O -0.560 6.560 22 O -0.510 6.510 23 C 0.069 3.931 24 H 0.266 0.734 25 H 0.368 0.632 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.044 0.956 29 H 0.049 0.951 30 H 0.087 0.913 31 H 0.130 0.870 32 H 0.423 0.577 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.146 0.854 36 H 0.144 0.856 37 H 0.429 0.571 38 H 0.069 0.931 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.951 -18.980 12.453 24.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.174 4.174 3 Si 0.787 3.213 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.594 4.594 8 H 0.080 0.920 9 C 0.191 3.809 10 O -0.395 6.395 11 C -0.175 4.175 12 C -0.058 4.058 13 N -0.254 5.254 14 C -0.100 4.100 15 C 0.299 3.701 16 O -0.445 6.445 17 N -0.371 5.371 18 C 0.008 3.992 19 C -0.150 4.150 20 C 0.331 3.669 21 O -0.451 6.451 22 O -0.323 6.323 23 C -0.058 4.058 24 H 0.075 0.925 25 H 0.216 0.784 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.104 0.896 31 H 0.148 0.852 32 H 0.261 0.739 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.164 0.836 36 H 0.162 0.838 37 H 0.291 0.709 38 H 0.087 0.913 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.268 -19.458 11.358 23.999 hybrid contribution -0.425 1.387 0.824 1.668 sum 7.844 -18.071 12.182 23.162 Atomic orbital electron populations 1.69904 1.07058 1.27965 1.50244 1.25746 0.95765 1.02466 0.93381 0.85529 0.78709 0.78846 0.78227 1.20475 1.21005 1.18973 1.21788 0.93983 0.91912 1.51717 0.92005 1.19854 0.88223 0.91827 0.81018 1.86173 1.47750 1.65074 1.40542 1.23136 1.00928 0.93517 0.99910 1.22538 0.93795 0.93721 0.95792 1.63191 1.07292 1.18271 1.36661 1.22290 0.97728 0.91792 0.98232 1.20937 0.86336 0.85063 0.77738 1.90724 1.23271 1.79887 1.50621 1.45622 1.23145 1.18432 1.49877 1.20885 0.94356 0.84988 0.98996 1.21436 0.99877 0.89932 1.03790 1.23491 0.84279 0.85013 0.74072 1.90799 1.24275 1.79955 1.50051 1.84473 1.53170 1.31907 1.62770 1.22904 0.94660 0.88693 0.99528 0.92453 0.78400 0.92850 0.92944 0.93708 0.93249 0.89565 0.85173 0.73908 0.92972 0.92819 0.83636 0.83774 0.70915 0.91324 0.91410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.83 10.85 21.45 0.23 -49.60 16 2 C 0.03 1.43 5.32 84.65 0.45 1.88 16 3 Si 0.96 41.97 29.54 68.60 2.03 44.00 16 4 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 7 C -0.56 -29.53 8.25 25.60 0.21 -29.32 16 8 H 0.06 3.18 7.79 -2.91 -0.02 3.16 16 9 C 0.23 11.63 0.86 -10.16 -0.01 11.62 16 10 O -0.59 -32.36 13.14 -148.98 -1.96 -34.32 16 11 C -0.14 -6.47 5.34 31.78 0.17 -6.30 16 12 C 0.07 2.94 5.65 86.65 0.49 3.43 16 13 N -0.53 -20.77 4.85 -890.09 -4.32 -25.09 16 14 C 0.03 0.82 5.03 85.56 0.43 1.25 16 15 C 0.51 14.51 7.48 87.66 0.66 15.16 16 16 O -0.57 -22.77 15.54 -3.03 -0.05 -22.81 16 17 N -0.71 -12.14 5.56 -463.07 -2.57 -14.71 16 18 C 0.13 2.39 4.96 86.38 0.43 2.82 16 19 C -0.11 -0.89 5.93 29.85 0.18 -0.71 16 20 C 0.49 6.57 8.33 71.24 0.59 7.16 16 21 O -0.56 -13.15 16.74 21.95 0.37 -12.78 16 22 O -0.51 -4.00 13.42 -51.35 -0.69 -4.69 16 23 C 0.07 2.89 5.86 86.77 0.51 3.40 16 24 H 0.27 13.91 8.31 -92.71 -0.77 13.13 16 25 H 0.37 20.50 7.71 -74.05 -0.57 19.93 16 26 H 0.05 2.78 7.47 -2.38 -0.02 2.76 16 27 H 0.05 2.48 8.03 -2.39 -0.02 2.46 16 28 H 0.04 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.05 1.87 7.31 -2.39 -0.02 1.86 16 30 H 0.09 1.94 7.96 -2.39 -0.02 1.92 16 31 H 0.13 2.67 8.07 -2.38 -0.02 2.65 16 32 H 0.42 3.18 8.47 -92.71 -0.79 2.39 16 33 H 0.05 1.22 8.10 -2.39 -0.02 1.20 16 34 H 0.05 1.25 8.10 -2.39 -0.02 1.23 16 35 H 0.15 0.32 8.14 -2.39 -0.02 0.30 16 36 H 0.14 0.35 8.14 -2.39 -0.02 0.33 16 37 H 0.43 0.41 9.10 -74.06 -0.67 -0.26 16 38 H 0.07 2.55 7.70 -2.38 -0.02 2.53 16 39 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 Total: -1.00 -78.63 330.66 -3.79 -82.42 By element: Atomic # 1 Polarization: 28.13 SS G_CDS: -0.93 Total: 27.20 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: 4.10 Total: 10.39 kcal Atomic # 7 Polarization: -82.74 SS G_CDS: -6.66 Total: -89.39 kcal Atomic # 8 Polarization: -72.28 SS G_CDS: -2.33 Total: -74.60 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Total: -78.63 -3.79 -82.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608181402.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.149 kcal (2) G-P(sol) polarization free energy of solvation -78.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds