Wall clock time and date at job start Tue Mar 31 2020 02:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99755 * 2 1 4 4 H 1.48500 * 109.46714 * 267.31851 * 3 2 1 5 5 H 1.48497 * 109.47211 * 27.31471 * 3 2 1 6 6 H 1.48501 * 109.47213 * 147.32248 * 3 2 1 7 7 C 1.37875 * 120.00513 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99440 * 353.52766 * 7 2 1 9 9 C 1.50691 * 120.00310 * 173.52245 * 7 2 1 10 10 O 1.42900 * 110.88754 * 328.70473 * 9 7 2 11 11 C 1.55155 * 111.04101 * 92.61191 * 9 7 2 12 12 C 1.54333 * 103.02328 * 153.39271 * 11 9 7 13 13 N 1.47020 * 107.26560 * 338.14323 * 12 11 9 14 14 C 1.34781 * 125.64631 * 178.84312 * 13 12 11 15 15 O 1.21592 * 119.99613 * 179.69027 * 14 13 12 16 16 N 1.34778 * 120.00234 * 359.69659 * 14 13 12 17 17 C 1.46494 * 120.00085 * 179.97438 * 16 14 13 18 18 C 1.53002 * 109.47141 * 179.97438 * 17 16 14 19 19 C 1.52997 * 109.47253 * 180.02562 * 18 17 16 20 20 C 1.50695 * 109.47495 * 180.02562 * 19 18 17 21 21 O 1.20834 * 119.99912 * 359.97438 * 20 19 18 22 22 O 1.34227 * 120.00495 * 179.97438 * 20 19 18 23 23 C 1.47419 * 108.70557 * 358.58368 * 13 12 11 24 24 H 0.96999 * 120.00681 * 0.02562 * 1 2 3 25 25 H 0.96696 * 114.00153 * 292.32994 * 10 9 7 26 26 H 1.08999 * 110.72001 * 271.95542 * 11 9 7 27 27 H 1.08999 * 110.71895 * 35.22752 * 11 9 7 28 28 H 1.09000 * 109.99653 * 218.66537 * 12 11 9 29 29 H 1.09006 * 109.77582 * 97.49598 * 12 11 9 30 30 H 0.96998 * 119.99797 * 359.97438 * 16 14 13 31 31 H 1.09001 * 109.47587 * 300.00025 * 17 16 14 32 32 H 1.09005 * 109.47116 * 60.00312 * 17 16 14 33 33 H 1.09001 * 109.46949 * 300.00475 * 18 17 16 34 34 H 1.08995 * 109.46836 * 60.00222 * 18 17 16 35 35 H 1.09001 * 109.46886 * 300.00300 * 19 18 17 36 36 H 1.09005 * 109.47526 * 59.99723 * 19 18 17 37 37 H 0.96698 * 117.00006 * 179.97438 * 22 20 19 38 38 H 1.08999 * 110.36942 * 143.19120 * 23 13 12 39 39 H 1.09005 * 110.36927 * 265.41038 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.5532 2.0137 -1.3986 5 1 1.4192 2.6684 0.6424 6 1 3.5172 1.4573 0.7559 7 6 2.0046 -1.1940 0.0005 8 1 1.4697 -2.1263 0.1064 9 6 3.5043 -1.1982 -0.1467 10 8 3.9404 -0.1000 -0.9504 11 6 4.2002 -1.1833 1.2400 12 6 5.5566 -1.8623 0.9556 13 7 5.3952 -2.6654 -0.2652 14 6 6.3603 -3.3957 -0.8584 15 8 6.1110 -4.0283 -1.8665 16 7 7.6016 -3.4250 -0.3341 17 6 8.6504 -4.2192 -0.9785 18 6 9.9535 -4.0798 -0.1888 19 6 11.0490 -4.9087 -0.8622 20 6 12.3323 -4.7720 -0.0841 21 8 12.3672 -4.0818 0.9071 22 8 13.4366 -5.4168 -0.4921 23 6 4.0013 -2.5447 -0.7297 24 1 -0.4851 0.8400 -0.0004 25 1 3.6750 -0.1618 -1.8782 26 1 4.3437 -0.1606 1.5885 27 1 3.6278 -1.7621 1.9649 28 1 5.8327 -2.5073 1.7898 29 1 6.3238 -1.1034 0.8014 30 1 7.8004 -2.9201 0.4700 31 1 8.3500 -5.2667 -1.0025 32 1 8.8031 -3.8615 -1.9968 33 1 10.2537 -3.0322 -0.1652 34 1 9.8011 -4.4371 0.8295 35 1 10.7489 -5.9563 -0.8862 36 1 11.2013 -4.5511 -1.8806 37 1 14.2358 -5.2981 0.0391 38 1 3.9648 -2.5229 -1.8188 39 1 3.4010 -3.3702 -0.3471 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608182337.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:26:26 Heat of formation + Delta-G solvation = -172.481559 kcal Electronic energy + Delta-G solvation = -22623.217142 eV Core-core repulsion = 18951.781424 eV Total energy + Delta-G solvation = -3671.435717 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 286.141 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.67373 -39.92068 -37.91407 -36.70822 -35.67651 -34.71821 -32.89730 -32.36670 -30.30768 -28.46009 -27.53063 -25.07790 -23.11859 -22.36829 -21.25131 -19.86199 -19.63831 -18.54014 -17.83319 -17.37566 -17.00832 -16.79852 -15.77743 -15.73393 -15.06959 -15.04956 -14.71519 -14.23830 -13.76761 -13.64094 -13.42621 -12.77247 -12.75879 -12.64594 -12.35034 -11.97948 -11.95052 -11.83682 -11.63493 -11.54902 -11.29627 -11.02708 -11.01965 -10.50263 -10.38811 -10.20872 -9.86345 -9.23920 -9.04174 -8.67205 -8.52918 -8.00666 -6.19416 -4.31521 1.77881 2.50163 2.97772 3.45772 3.49626 3.52163 3.68967 4.15793 4.43884 4.49665 4.50147 4.58912 4.99618 5.04041 5.10963 5.12999 5.14717 5.33428 5.40848 5.57169 5.74138 5.74503 5.82132 5.89533 6.07012 6.08922 6.48487 6.52760 6.55981 6.65458 6.72533 7.04946 7.31344 7.44993 7.47972 8.12326 8.26242 8.62072 8.81459 8.86912 9.42031 10.89391 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.039280 B = 0.002956 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.653601 B = 9471.374410 C = 9798.254231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.074 3.926 3 Si 0.952 3.048 4 H -0.293 1.293 5 H -0.327 1.327 6 H -0.270 1.270 7 C -0.552 4.552 8 H 0.082 0.918 9 C 0.219 3.781 10 O -0.559 6.559 11 C -0.120 4.120 12 C 0.101 3.899 13 N -0.628 5.628 14 C 0.719 3.281 15 O -0.599 6.599 16 N -0.750 5.750 17 C 0.141 3.859 18 C -0.123 4.123 19 C -0.110 4.110 20 C 0.479 3.521 21 O -0.515 6.515 22 O -0.519 6.519 23 C 0.108 3.892 24 H 0.267 0.733 25 H 0.371 0.629 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.396 0.604 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.411 0.589 38 H 0.070 0.930 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.599 -8.027 0.536 23.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.131 4.131 3 Si 0.788 3.212 4 H -0.221 1.221 5 H -0.258 1.258 6 H -0.196 1.196 7 C -0.589 4.589 8 H 0.100 0.900 9 C 0.179 3.821 10 O -0.367 6.367 11 C -0.158 4.158 12 C -0.023 4.023 13 N -0.365 5.365 14 C 0.421 3.579 15 O -0.478 6.478 16 N -0.407 5.407 17 C 0.016 3.984 18 C -0.161 4.161 19 C -0.148 4.148 20 C 0.321 3.679 21 O -0.403 6.403 22 O -0.331 6.331 23 C -0.014 4.014 24 H 0.076 0.924 25 H 0.219 0.781 26 H 0.098 0.902 27 H 0.104 0.896 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.230 0.770 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.270 0.730 38 H 0.088 0.912 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 22.197 -8.146 0.349 23.647 hybrid contribution 0.817 0.952 0.296 1.289 sum 23.014 -7.194 0.645 24.121 Atomic orbital electron populations 1.69965 1.06853 1.27829 1.47614 1.25116 0.94877 1.00535 0.92557 0.85634 0.77762 0.79930 0.77919 1.22081 1.25843 1.19589 1.21103 0.88390 0.95483 1.53937 0.90038 1.20254 0.93672 0.81170 0.87045 1.86106 1.80083 1.46583 1.23920 1.22949 0.92859 1.00881 0.99117 1.22063 1.00186 0.93717 0.86288 1.47710 1.11110 1.49108 1.28561 1.15437 0.79781 0.79957 0.82711 1.90890 1.81498 1.49022 1.26384 1.45034 1.09300 1.54214 1.32163 1.21048 0.85072 0.95993 0.96253 1.21629 0.92815 1.01426 1.00234 1.21238 0.88743 1.04312 1.00515 1.23522 0.85511 0.75520 0.83307 1.90755 1.85300 1.37824 1.26431 1.84537 1.21918 1.68368 1.58274 1.22993 0.78476 1.00236 0.99743 0.92397 0.78060 0.90174 0.89617 0.92698 0.92452 0.76996 0.91468 0.91483 0.90162 0.90173 0.87031 0.87018 0.73046 0.91200 0.91209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.07 13.96 55.43 0.77 -25.30 16 2 C 0.07 2.04 5.46 -17.82 -0.10 1.94 16 3 Si 0.95 23.13 24.93 -169.99 -4.24 18.89 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.33 -8.18 7.11 56.52 0.40 -7.78 16 6 H -0.27 -6.38 5.42 56.52 0.31 -6.07 16 7 C -0.55 -14.39 8.89 -34.45 -0.31 -14.69 16 8 H 0.08 2.31 8.00 -52.48 -0.42 1.89 16 9 C 0.22 4.76 0.70 -89.62 -0.06 4.69 16 10 O -0.56 -12.05 8.52 -35.23 -0.30 -12.35 16 11 C -0.12 -2.28 5.90 -24.89 -0.15 -2.42 16 12 C 0.10 1.59 6.15 -3.06 -0.02 1.57 16 13 N -0.63 -11.30 3.33 -176.22 -0.59 -11.88 16 14 C 0.72 12.74 8.49 -86.91 -0.74 12.00 16 15 O -0.60 -12.67 16.60 5.28 0.09 -12.58 16 16 N -0.75 -9.70 5.52 -65.22 -0.36 -10.06 16 17 C 0.14 1.42 5.67 -4.04 -0.02 1.39 16 18 C -0.12 -0.92 4.62 -26.73 -0.12 -1.04 16 19 C -0.11 -0.61 5.81 -27.89 -0.16 -0.78 16 20 C 0.48 3.55 8.33 36.00 0.30 3.85 16 21 O -0.52 -5.62 16.74 -18.76 -0.31 -5.93 16 22 O -0.52 -2.81 13.42 -39.25 -0.53 -3.33 16 23 C 0.11 2.19 6.07 -2.53 -0.02 2.17 16 24 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 25 H 0.37 7.22 8.98 45.56 0.41 7.63 16 26 H 0.08 1.56 6.65 -51.93 -0.35 1.22 16 27 H 0.09 1.60 8.03 -51.93 -0.42 1.18 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.40 4.35 7.46 -40.82 -0.30 4.05 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 34 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 35 H 0.11 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.11 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.41 0.66 9.10 45.56 0.41 1.07 16 38 H 0.07 1.45 8.02 -51.93 -0.42 1.03 16 39 H 0.07 1.44 7.99 -51.93 -0.41 1.03 16 LS Contribution 326.32 15.07 4.92 4.92 Total: -1.00 -35.46 326.32 -6.04 -41.50 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -4.10 Total: 7.45 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: -1.39 Total: 8.69 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: -0.17 Total: -47.25 kcal Atomic # 8 Polarization: -33.15 SS G_CDS: -1.05 Total: -34.20 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -4.24 Total: 18.89 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.46 -6.04 -41.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608182337.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.977 kcal (2) G-P(sol) polarization free energy of solvation -35.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds