Wall clock time and date at job start Tue Mar 31 2020 02:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99755 * 2 1 4 4 H 1.48500 * 109.46714 * 267.31851 * 3 2 1 5 5 H 1.48497 * 109.47211 * 27.31471 * 3 2 1 6 6 H 1.48501 * 109.47213 * 147.32248 * 3 2 1 7 7 C 1.37875 * 120.00513 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99440 * 353.52766 * 7 2 1 9 9 C 1.50691 * 120.00310 * 173.52245 * 7 2 1 10 10 O 1.42900 * 110.88754 * 328.70473 * 9 7 2 11 11 C 1.55155 * 111.04101 * 92.61191 * 9 7 2 12 12 C 1.54333 * 103.02328 * 153.39271 * 11 9 7 13 13 N 1.47020 * 107.26560 * 338.14323 * 12 11 9 14 14 C 1.34781 * 125.64631 * 178.84312 * 13 12 11 15 15 O 1.21592 * 119.99613 * 179.69027 * 14 13 12 16 16 N 1.34778 * 120.00234 * 359.69659 * 14 13 12 17 17 C 1.46494 * 120.00085 * 179.97438 * 16 14 13 18 18 C 1.53002 * 109.47141 * 179.97438 * 17 16 14 19 19 C 1.52997 * 109.47253 * 180.02562 * 18 17 16 20 20 C 1.50695 * 109.47495 * 180.02562 * 19 18 17 21 21 O 1.20834 * 119.99912 * 359.97438 * 20 19 18 22 22 O 1.34227 * 120.00495 * 179.97438 * 20 19 18 23 23 C 1.47419 * 108.70557 * 358.58368 * 13 12 11 24 24 H 0.96999 * 120.00681 * 0.02562 * 1 2 3 25 25 H 0.96696 * 114.00153 * 292.32994 * 10 9 7 26 26 H 1.08999 * 110.72001 * 271.95542 * 11 9 7 27 27 H 1.08999 * 110.71895 * 35.22752 * 11 9 7 28 28 H 1.09000 * 109.99653 * 218.66537 * 12 11 9 29 29 H 1.09006 * 109.77582 * 97.49598 * 12 11 9 30 30 H 0.96998 * 119.99797 * 359.97438 * 16 14 13 31 31 H 1.09001 * 109.47587 * 300.00025 * 17 16 14 32 32 H 1.09005 * 109.47116 * 60.00312 * 17 16 14 33 33 H 1.09001 * 109.46949 * 300.00475 * 18 17 16 34 34 H 1.08995 * 109.46836 * 60.00222 * 18 17 16 35 35 H 1.09001 * 109.46886 * 300.00300 * 19 18 17 36 36 H 1.09005 * 109.47526 * 59.99723 * 19 18 17 37 37 H 0.96698 * 117.00006 * 179.97438 * 22 20 19 38 38 H 1.08999 * 110.36942 * 143.19120 * 23 13 12 39 39 H 1.09005 * 110.36927 * 265.41038 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.5532 2.0137 -1.3986 5 1 1.4192 2.6684 0.6424 6 1 3.5172 1.4573 0.7559 7 6 2.0046 -1.1940 0.0005 8 1 1.4697 -2.1263 0.1064 9 6 3.5043 -1.1982 -0.1467 10 8 3.9404 -0.1000 -0.9504 11 6 4.2002 -1.1833 1.2400 12 6 5.5566 -1.8623 0.9556 13 7 5.3952 -2.6654 -0.2652 14 6 6.3603 -3.3957 -0.8584 15 8 6.1110 -4.0283 -1.8665 16 7 7.6016 -3.4250 -0.3341 17 6 8.6504 -4.2192 -0.9785 18 6 9.9535 -4.0798 -0.1888 19 6 11.0490 -4.9087 -0.8622 20 6 12.3323 -4.7720 -0.0841 21 8 12.3672 -4.0818 0.9071 22 8 13.4366 -5.4168 -0.4921 23 6 4.0013 -2.5447 -0.7297 24 1 -0.4851 0.8400 -0.0004 25 1 3.6750 -0.1618 -1.8782 26 1 4.3437 -0.1606 1.5885 27 1 3.6278 -1.7621 1.9649 28 1 5.8327 -2.5073 1.7898 29 1 6.3238 -1.1034 0.8014 30 1 7.8004 -2.9201 0.4700 31 1 8.3500 -5.2667 -1.0025 32 1 8.8031 -3.8615 -1.9968 33 1 10.2537 -3.0322 -0.1652 34 1 9.8011 -4.4371 0.8295 35 1 10.7489 -5.9563 -0.8862 36 1 11.2013 -4.5511 -1.8806 37 1 14.2358 -5.2981 0.0391 38 1 3.9648 -2.5229 -1.8188 39 1 3.4010 -3.3702 -0.3471 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608182337.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:26:24 Heat of formation + Delta-G solvation = -202.333367 kcal Electronic energy + Delta-G solvation = -22624.511613 eV Core-core repulsion = 18951.781424 eV Total energy + Delta-G solvation = -3672.730189 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 286.141 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.38169 -41.15747 -39.42550 -37.28524 -36.60894 -36.30012 -34.44427 -33.80077 -31.80596 -29.97251 -28.53494 -26.76269 -24.25505 -23.45584 -21.86754 -21.55085 -20.90191 -19.55972 -19.10371 -18.80032 -17.72458 -17.41729 -17.13956 -16.99708 -16.73544 -16.54022 -15.87162 -15.50134 -15.19337 -14.88600 -14.52787 -14.08193 -13.99209 -13.81583 -13.57267 -13.29383 -13.21615 -13.10966 -12.73439 -12.51024 -12.48948 -12.28539 -12.19887 -11.94113 -11.91894 -11.62445 -11.35315 -11.21616 -10.62756 -10.39877 -10.19688 -9.40375 -8.32539 -6.46088 1.25045 1.52120 1.54539 1.58910 1.76120 2.13349 2.21927 2.47153 2.98523 3.07135 3.50754 3.82714 3.86750 3.97984 3.99291 4.10201 4.28420 4.44562 4.51587 4.53837 4.62165 4.70145 4.74535 4.85127 4.97358 5.09181 5.14225 5.21480 5.23130 5.39501 5.51675 5.55551 5.67073 6.06600 6.11056 6.59901 6.91046 7.00990 7.02666 7.31819 7.54317 8.80388 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.039280 B = 0.002956 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.653601 B = 9471.374410 C = 9798.254231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.024 3.976 3 Si 1.011 2.989 4 H -0.287 1.287 5 H -0.338 1.338 6 H -0.254 1.254 7 C -0.547 4.547 8 H 0.045 0.955 9 C 0.216 3.784 10 O -0.559 6.559 11 C -0.119 4.119 12 C 0.107 3.893 13 N -0.631 5.631 14 C 0.715 3.285 15 O -0.638 6.638 16 N -0.733 5.733 17 C 0.140 3.860 18 C -0.110 4.110 19 C -0.108 4.108 20 C 0.484 3.516 21 O -0.556 6.556 22 O -0.516 6.516 23 C 0.117 3.883 24 H 0.267 0.733 25 H 0.379 0.621 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.408 0.592 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.427 0.573 38 H 0.059 0.941 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.740 -8.011 0.863 26.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.175 4.175 3 Si 0.845 3.155 4 H -0.214 1.214 5 H -0.271 1.271 6 H -0.179 1.179 7 C -0.585 4.585 8 H 0.063 0.937 9 C 0.175 3.825 10 O -0.368 6.368 11 C -0.157 4.157 12 C -0.015 4.015 13 N -0.368 5.368 14 C 0.417 3.583 15 O -0.521 6.521 16 N -0.390 5.390 17 C 0.016 3.984 18 C -0.148 4.148 19 C -0.146 4.146 20 C 0.329 3.671 21 O -0.448 6.448 22 O -0.329 6.329 23 C -0.007 4.007 24 H 0.076 0.924 25 H 0.229 0.771 26 H 0.099 0.901 27 H 0.103 0.897 28 H 0.107 0.893 29 H 0.096 0.904 30 H 0.245 0.755 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.149 0.851 36 H 0.148 0.852 37 H 0.288 0.712 38 H 0.077 0.923 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 25.423 -8.150 0.693 26.706 hybrid contribution -0.129 0.820 0.160 0.846 sum 25.294 -7.329 0.853 26.348 Atomic orbital electron populations 1.70085 1.08578 1.28530 1.50311 1.25873 0.95319 1.03768 0.92585 0.84667 0.76780 0.75899 0.78176 1.21443 1.27103 1.17930 1.21340 0.91027 0.93811 1.52306 0.93703 1.20138 0.91287 0.82086 0.88944 1.86062 1.79676 1.46376 1.24650 1.22860 0.94446 1.01468 0.96914 1.22133 0.98579 0.94393 0.86360 1.47627 1.10170 1.49730 1.29277 1.15611 0.80805 0.79554 0.82354 1.90863 1.82372 1.50610 1.28229 1.44974 1.08031 1.53813 1.32183 1.21217 0.85255 0.95495 0.96450 1.21473 0.91910 1.01624 0.99815 1.21275 0.87331 1.05178 1.00797 1.23775 0.86229 0.74563 0.82566 1.90746 1.85989 1.39740 1.28280 1.84505 1.22347 1.67650 1.58423 1.22620 0.80157 0.98936 0.98967 0.92439 0.77141 0.90108 0.89690 0.89295 0.90433 0.75539 0.91442 0.91654 0.90552 0.90368 0.85134 0.85225 0.71173 0.92265 0.92417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.57 13.96 21.45 0.30 -56.27 16 2 C 0.02 1.35 5.46 84.65 0.46 1.81 16 3 Si 1.01 47.29 24.93 68.60 1.71 49.00 16 4 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 5 H -0.34 -16.40 7.11 99.48 0.71 -15.69 16 6 H -0.25 -11.12 5.42 99.48 0.54 -10.59 16 7 C -0.55 -28.99 8.89 25.60 0.23 -28.76 16 8 H 0.04 2.65 8.00 -2.91 -0.02 2.63 16 9 C 0.22 9.18 0.70 -10.15 -0.01 9.17 16 10 O -0.56 -22.98 8.52 -148.98 -1.27 -24.25 16 11 C -0.12 -4.24 5.90 31.79 0.19 -4.05 16 12 C 0.11 3.02 6.15 86.73 0.53 3.55 16 13 N -0.63 -21.40 3.33 -829.71 -2.76 -24.16 16 14 C 0.71 23.94 8.49 179.05 1.52 25.46 16 15 O -0.64 -26.45 16.60 -4.01 -0.07 -26.51 16 16 N -0.73 -16.92 5.52 -478.53 -2.64 -19.56 16 17 C 0.14 2.45 5.67 86.38 0.49 2.94 16 18 C -0.11 -1.34 4.62 30.59 0.14 -1.20 16 19 C -0.11 -0.89 5.81 29.85 0.17 -0.72 16 20 C 0.48 6.07 8.33 71.23 0.59 6.66 16 21 O -0.56 -11.26 16.74 21.94 0.37 -10.89 16 22 O -0.52 -4.30 13.42 -51.38 -0.69 -4.98 16 23 C 0.12 4.70 6.07 86.86 0.53 5.22 16 24 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 25 H 0.38 14.20 8.98 -74.06 -0.67 13.53 16 26 H 0.08 2.89 6.65 -2.39 -0.02 2.88 16 27 H 0.08 3.02 8.03 -2.39 -0.02 3.00 16 28 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.08 1.92 8.14 -2.38 -0.02 1.91 16 30 H 0.41 7.48 7.46 -92.71 -0.69 6.79 16 31 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 33 H 0.08 1.02 8.10 -2.39 -0.02 1.01 16 34 H 0.08 1.02 8.10 -2.39 -0.02 1.00 16 35 H 0.13 0.62 8.14 -2.39 -0.02 0.61 16 36 H 0.13 0.65 8.14 -2.38 -0.02 0.63 16 37 H 0.43 0.43 9.10 -74.06 -0.67 -0.24 16 38 H 0.06 2.47 8.02 -2.39 -0.02 2.45 16 39 H 0.06 2.43 7.99 -2.38 -0.02 2.41 16 Total: -1.00 -77.48 326.32 -1.30 -78.78 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: -1.10 Total: 18.77 kcal Atomic # 6 Polarization: 15.23 SS G_CDS: 4.85 Total: 20.08 kcal Atomic # 7 Polarization: -94.89 SS G_CDS: -5.10 Total: -99.99 kcal Atomic # 8 Polarization: -64.98 SS G_CDS: -1.66 Total: -66.64 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 1.71 Total: 49.00 kcal Total: -77.48 -1.30 -78.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608182337.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.555 kcal (2) G-P(sol) polarization free energy of solvation -77.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds