Wall clock time and date at job start Tue Mar 31 2020 02:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.46972 * 2 1 4 4 C 1.50702 * 109.47060 * 120.00028 * 2 1 3 5 5 O 1.21278 * 119.99873 * 120.00520 * 4 2 1 6 6 N 1.34771 * 120.00224 * 300.00121 * 4 2 1 7 7 C 1.46493 * 120.00223 * 180.02562 * 6 4 2 8 8 C 1.50704 * 109.47523 * 180.02562 * 7 6 4 9 9 O 1.20829 * 119.99675 * 359.97438 * 8 7 6 10 10 O 1.34220 * 120.00415 * 180.02562 * 8 7 6 11 11 N 1.46901 * 109.47484 * 240.00375 * 2 1 3 12 12 C 1.47906 * 110.99867 * 52.25967 * 11 2 1 13 13 C 1.53986 * 107.05674 * 145.84780 * 12 11 2 14 14 C 1.54595 * 105.14420 * 358.77376 * 13 12 11 15 15 O 1.42894 * 110.72870 * 96.39850 * 14 13 12 16 16 C 1.50697 * 110.72677 * 219.69076 * 14 13 12 17 17 H 1.07993 * 120.00857 * 118.54034 * 16 14 13 18 18 C 1.37882 * 119.99805 * 298.54046 * 16 14 13 19 19 N 1.31519 * 119.99728 * 0.02562 * 18 16 14 20 20 Si 1.86795 * 120.00124 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46990 * 60.00449 * 20 18 16 22 22 H 1.48504 * 109.46840 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47288 * 300.00023 * 20 18 16 24 24 C 1.48536 * 111.00132 * 169.65430 * 11 2 1 25 25 H 1.09001 * 109.47776 * 303.78029 * 1 2 3 26 26 H 1.08998 * 109.47156 * 63.78137 * 1 2 3 27 27 H 1.09004 * 109.47059 * 183.77607 * 1 2 3 28 28 H 0.97003 * 119.99987 * 359.97438 * 6 4 2 29 29 H 1.09004 * 109.47213 * 299.99988 * 7 6 4 30 30 H 1.08996 * 109.47278 * 60.00281 * 7 6 4 31 31 H 0.96700 * 117.00584 * 179.97438 * 10 8 7 32 32 H 1.08994 * 109.91844 * 26.49061 * 12 11 2 33 33 H 1.09005 * 110.07477 * 265.28820 * 12 11 2 34 34 H 1.09000 * 110.31318 * 117.68893 * 13 12 11 35 35 H 1.09003 * 110.31081 * 239.85534 * 13 12 11 36 36 H 0.96710 * 113.99596 * 61.45468 * 15 14 13 37 37 H 0.97001 * 119.99974 * 180.02562 * 19 18 16 38 38 H 1.08999 * 110.66479 * 318.71312 * 24 11 2 39 39 H 1.08994 * 110.66682 * 81.84437 * 24 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6964 1.1192 6 7 1.7067 -0.2500 2.4546 7 6 2.1955 -0.9403 3.6507 8 6 1.6925 -0.2304 4.8812 9 8 0.9975 0.7517 4.7704 10 8 2.0174 -0.6885 6.1003 11 7 2.0197 -0.6924 -1.1995 12 6 1.3996 -0.1374 -2.4222 13 6 2.4575 -0.2114 -3.5387 14 6 3.7141 -0.8093 -2.8654 15 8 3.7839 -2.2193 -3.0863 16 6 4.9620 -0.1274 -3.3643 17 1 5.5969 0.4089 -2.6747 18 6 5.2931 -0.1882 -4.7014 19 7 4.5197 -0.8409 -5.5413 20 14 6.8395 0.6576 -5.3200 21 1 8.0249 0.0877 -4.6306 22 1 6.9686 0.4438 -6.7839 23 1 6.7546 2.1130 -5.0373 24 6 3.4833 -0.5003 -1.3647 25 1 -0.3635 0.5714 0.8541 26 1 -0.3633 0.4540 -0.9219 27 1 -0.3633 -1.0255 0.0677 28 1 1.1493 0.5389 2.5436 29 1 1.8325 -1.9681 3.6508 30 1 3.2854 -0.9398 3.6506 31 1 1.6716 -0.1997 6.8596 32 1 1.1096 0.8996 -2.2535 33 1 0.5256 -0.7270 -2.6991 34 1 2.1138 -0.8617 -4.3431 35 1 2.6724 0.7857 -3.9230 36 1 3.8502 -2.4685 -4.0184 37 1 4.7528 -0.8840 -6.4819 38 1 3.7646 0.5276 -1.1359 39 1 4.0363 -1.2001 -0.7384 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609634265.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:26 Heat of formation + Delta-G solvation = -161.713997 kcal Electronic energy + Delta-G solvation = -23355.835825 eV Core-core repulsion = 19684.867024 eV Total energy + Delta-G solvation = -3670.968801 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 286.141 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.84790 -39.76860 -37.96333 -36.66419 -34.98759 -34.57783 -32.05862 -31.87379 -28.81061 -28.42198 -27.48864 -24.37225 -23.99718 -21.98819 -20.63191 -19.82857 -19.31373 -18.47127 -17.75183 -16.86164 -16.62124 -16.35813 -15.81159 -15.12328 -14.95622 -14.83679 -14.35071 -14.10475 -13.55734 -13.46851 -13.11372 -12.80338 -12.52731 -12.28900 -12.01688 -11.89567 -11.74471 -11.64732 -11.21730 -11.11421 -11.02817 -10.77185 -10.58436 -10.45053 -10.30183 -9.75520 -9.56894 -9.28776 -9.03409 -8.52700 -8.01317 -7.68169 -6.15187 -4.23252 1.69575 2.28109 2.78241 3.20357 3.26853 3.31741 3.34926 4.32587 4.53479 4.66767 4.84767 4.95060 5.09263 5.12948 5.16529 5.31507 5.62619 5.73144 5.81946 5.99116 6.01433 6.02430 6.16259 6.18621 6.23714 6.51100 6.70943 6.99750 7.14253 7.31097 7.39635 7.43343 7.56984 7.60420 7.71027 7.87554 8.25965 8.32952 8.78957 9.45422 9.66133 10.91720 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.027344 B = 0.003687 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.737875 B = 7593.130270 C = 8041.636702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.057 3.943 3 H 0.065 0.935 4 C 0.524 3.476 5 O -0.502 6.502 6 N -0.734 5.734 7 C 0.129 3.871 8 C 0.480 3.520 9 O -0.514 6.514 10 O -0.510 6.510 11 N -0.491 5.491 12 C 0.038 3.962 13 C -0.130 4.130 14 C 0.258 3.742 15 O -0.576 6.576 16 C -0.537 4.537 17 H 0.059 0.941 18 C 0.071 3.929 19 N -0.894 5.894 20 Si 0.899 3.101 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.277 1.277 24 C 0.054 3.946 25 H 0.059 0.941 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.409 0.591 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.415 0.585 32 H 0.030 0.970 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.375 0.625 37 H 0.266 0.734 38 H 0.039 0.961 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.438 3.258 16.566 18.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.056 4.056 3 H 0.082 0.918 4 C 0.310 3.690 5 O -0.374 6.374 6 N -0.394 5.394 7 C 0.003 3.997 8 C 0.322 3.678 9 O -0.402 6.402 10 O -0.321 6.321 11 N -0.216 5.216 12 C -0.089 4.089 13 C -0.169 4.169 14 C 0.217 3.783 15 O -0.383 6.383 16 C -0.576 4.576 17 H 0.077 0.923 18 C -0.131 4.131 19 N -0.534 5.534 20 Si 0.726 3.274 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.203 1.203 24 C -0.073 4.073 25 H 0.078 0.922 26 H 0.091 0.909 27 H 0.087 0.913 28 H 0.246 0.754 29 H 0.131 0.869 30 H 0.131 0.869 31 H 0.275 0.725 32 H 0.049 0.951 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.224 0.776 37 H 0.076 0.924 38 H 0.057 0.943 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.154 1.960 16.651 18.643 hybrid contribution 0.513 2.200 -0.450 2.303 sum -7.641 4.160 16.201 18.389 Atomic orbital electron populations 1.21865 0.92490 1.03174 1.02597 1.21718 0.96805 0.96092 0.90946 0.91790 1.20694 0.80016 0.84837 0.83472 1.90756 1.35598 1.24983 1.86045 1.45845 1.55996 1.33392 1.04211 1.20534 1.01796 0.97011 0.80315 1.23363 0.76916 0.82309 0.85235 1.90731 1.36111 1.26272 1.87078 1.84500 1.72102 1.58943 1.16600 1.64668 1.06485 1.51123 0.99303 1.22944 0.98765 0.96112 0.91114 1.22947 0.95843 1.01774 0.96302 1.19303 0.91239 0.79799 0.87937 1.86195 1.96735 1.24178 1.31234 1.21577 1.08828 1.33642 0.93520 0.92279 1.24993 0.96755 0.94735 0.96632 1.69736 1.37583 1.42072 1.03970 0.86556 0.83415 0.79854 0.77565 1.20073 1.21179 1.20253 1.23273 0.86166 0.98460 0.99421 0.92197 0.90932 0.91312 0.75408 0.86947 0.86946 0.72520 0.95130 0.91599 0.91373 0.92030 0.77632 0.92374 0.94258 0.89665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 8.88 37.16 0.33 -1.42 16 2 C 0.06 0.89 2.24 -68.87 -0.15 0.73 16 3 H 0.06 0.94 7.89 -51.93 -0.41 0.53 16 4 C 0.52 8.20 6.96 -10.99 -0.08 8.12 16 5 O -0.50 -9.96 14.88 5.56 0.08 -9.87 16 6 N -0.73 -8.50 5.43 -61.48 -0.33 -8.83 16 7 C 0.13 1.22 6.27 -5.20 -0.03 1.19 16 8 C 0.48 4.09 8.40 36.01 0.30 4.40 16 9 O -0.51 -5.66 16.43 -18.75 -0.31 -5.97 16 10 O -0.51 -3.07 13.42 -39.23 -0.53 -3.60 16 11 N -0.49 -9.85 4.79 -223.88 -1.07 -10.92 16 12 C 0.04 0.73 5.25 -2.76 -0.01 0.72 16 13 C -0.13 -3.02 5.26 -25.38 -0.13 -3.15 16 14 C 0.26 6.63 0.95 -89.91 -0.09 6.54 16 15 O -0.58 -15.89 13.09 -35.23 -0.46 -16.35 16 16 C -0.54 -14.72 8.14 -34.44 -0.28 -15.00 16 17 H 0.06 1.61 7.78 -52.49 -0.41 1.20 16 18 C 0.07 1.91 5.28 -17.82 -0.09 1.82 16 19 N -0.89 -24.20 11.02 55.43 0.61 -23.59 16 20 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 24 C 0.05 1.24 5.01 -1.89 -0.01 1.23 16 25 H 0.06 0.57 7.67 -51.93 -0.40 0.17 16 26 H 0.07 0.86 6.48 -51.93 -0.34 0.52 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.41 4.19 6.93 -40.82 -0.28 3.91 16 29 H 0.11 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.42 0.73 9.10 45.56 0.41 1.14 16 32 H 0.03 0.52 7.14 -51.93 -0.37 0.15 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.07 1.66 7.98 -51.93 -0.41 1.25 16 35 H 0.06 1.48 7.84 -51.93 -0.41 1.07 16 36 H 0.37 10.28 7.48 45.56 0.34 10.62 16 37 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 38 H 0.04 0.87 7.75 -51.93 -0.40 0.46 16 39 H 0.09 2.13 6.95 -51.93 -0.36 1.77 16 LS Contribution 324.43 15.07 4.89 4.89 Total: -1.00 -33.30 324.43 -6.25 -39.55 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -3.86 Total: 13.64 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: -0.25 Total: 5.17 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: -0.80 Total: -43.34 kcal Atomic # 8 Polarization: -34.58 SS G_CDS: -1.21 Total: -35.79 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.30 -6.25 -39.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609634265.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.161 kcal (2) G-P(sol) polarization free energy of solvation -33.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds