Wall clock time and date at job start Tue Mar 31 2020 02:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.46972 * 2 1 4 4 C 1.50702 * 109.47060 * 120.00028 * 2 1 3 5 5 O 1.21278 * 119.99873 * 120.00520 * 4 2 1 6 6 N 1.34771 * 120.00224 * 300.00121 * 4 2 1 7 7 C 1.46493 * 120.00223 * 180.02562 * 6 4 2 8 8 C 1.50704 * 109.47523 * 180.02562 * 7 6 4 9 9 O 1.20829 * 119.99675 * 359.97438 * 8 7 6 10 10 O 1.34220 * 120.00415 * 180.02562 * 8 7 6 11 11 N 1.46901 * 109.47484 * 240.00375 * 2 1 3 12 12 C 1.47906 * 110.99867 * 52.25967 * 11 2 1 13 13 C 1.53986 * 107.05674 * 145.84780 * 12 11 2 14 14 C 1.54595 * 105.14420 * 358.77376 * 13 12 11 15 15 O 1.42894 * 110.72870 * 96.39850 * 14 13 12 16 16 C 1.50697 * 110.72677 * 219.69076 * 14 13 12 17 17 H 1.07993 * 120.00857 * 118.54034 * 16 14 13 18 18 C 1.37882 * 119.99805 * 298.54046 * 16 14 13 19 19 N 1.31519 * 119.99728 * 0.02562 * 18 16 14 20 20 Si 1.86795 * 120.00124 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46990 * 60.00449 * 20 18 16 22 22 H 1.48504 * 109.46840 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47288 * 300.00023 * 20 18 16 24 24 C 1.48536 * 111.00132 * 169.65430 * 11 2 1 25 25 H 1.09001 * 109.47776 * 303.78029 * 1 2 3 26 26 H 1.08998 * 109.47156 * 63.78137 * 1 2 3 27 27 H 1.09004 * 109.47059 * 183.77607 * 1 2 3 28 28 H 0.97003 * 119.99987 * 359.97438 * 6 4 2 29 29 H 1.09004 * 109.47213 * 299.99988 * 7 6 4 30 30 H 1.08996 * 109.47278 * 60.00281 * 7 6 4 31 31 H 0.96700 * 117.00584 * 179.97438 * 10 8 7 32 32 H 1.08994 * 109.91844 * 26.49061 * 12 11 2 33 33 H 1.09005 * 110.07477 * 265.28820 * 12 11 2 34 34 H 1.09000 * 110.31318 * 117.68893 * 13 12 11 35 35 H 1.09003 * 110.31081 * 239.85534 * 13 12 11 36 36 H 0.96710 * 113.99596 * 61.45468 * 15 14 13 37 37 H 0.97001 * 119.99974 * 180.02562 * 19 18 16 38 38 H 1.08999 * 110.66479 * 318.71312 * 24 11 2 39 39 H 1.08994 * 110.66682 * 81.84437 * 24 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6964 1.1192 6 7 1.7067 -0.2500 2.4546 7 6 2.1955 -0.9403 3.6507 8 6 1.6925 -0.2304 4.8812 9 8 0.9975 0.7517 4.7704 10 8 2.0174 -0.6885 6.1003 11 7 2.0197 -0.6924 -1.1995 12 6 1.3996 -0.1374 -2.4222 13 6 2.4575 -0.2114 -3.5387 14 6 3.7141 -0.8093 -2.8654 15 8 3.7839 -2.2193 -3.0863 16 6 4.9620 -0.1274 -3.3643 17 1 5.5969 0.4089 -2.6747 18 6 5.2931 -0.1882 -4.7014 19 7 4.5197 -0.8409 -5.5413 20 14 6.8395 0.6576 -5.3200 21 1 8.0249 0.0877 -4.6306 22 1 6.9686 0.4438 -6.7839 23 1 6.7546 2.1130 -5.0373 24 6 3.4833 -0.5003 -1.3647 25 1 -0.3635 0.5714 0.8541 26 1 -0.3633 0.4540 -0.9219 27 1 -0.3633 -1.0255 0.0677 28 1 1.1493 0.5389 2.5436 29 1 1.8325 -1.9681 3.6508 30 1 3.2854 -0.9398 3.6506 31 1 1.6716 -0.1997 6.8596 32 1 1.1096 0.8996 -2.2535 33 1 0.5256 -0.7270 -2.6991 34 1 2.1138 -0.8617 -4.3431 35 1 2.6724 0.7857 -3.9230 36 1 3.8502 -2.4685 -4.0184 37 1 4.7528 -0.8840 -6.4819 38 1 3.7646 0.5276 -1.1359 39 1 4.0363 -1.2001 -0.7384 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609634265.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:22 Heat of formation + Delta-G solvation = -191.348242 kcal Electronic energy + Delta-G solvation = -23357.120862 eV Core-core repulsion = 19684.867024 eV Total energy + Delta-G solvation = -3672.253838 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 286.141 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.66788 -40.94600 -39.55027 -37.32085 -36.74279 -35.65022 -34.15453 -33.36402 -30.14339 -29.93070 -28.98519 -26.24942 -25.20318 -22.84168 -21.91977 -21.38109 -20.99898 -19.25960 -19.02782 -18.50759 -17.62668 -17.34825 -16.97859 -16.69737 -16.52443 -16.24533 -15.75657 -15.58670 -14.98360 -14.83244 -14.27400 -13.95881 -13.87779 -13.73382 -13.43603 -13.31548 -13.20718 -12.94087 -12.67403 -12.64337 -12.50701 -12.28675 -12.25522 -12.06677 -11.84179 -11.66798 -11.06859 -10.80433 -10.57158 -10.30573 -10.06037 -9.21385 -8.19580 -6.35855 1.02601 1.41187 1.43282 1.50453 1.51381 1.58872 2.33953 2.39441 3.04444 3.13380 3.67669 3.93278 3.99276 4.10224 4.16946 4.18281 4.24833 4.34539 4.36155 4.47612 4.72061 4.75648 4.91672 4.92799 5.12310 5.19589 5.26670 5.28134 5.48482 5.50402 5.60026 5.78323 5.91494 6.08599 6.27400 6.45648 6.69462 6.86635 7.19179 7.35777 7.52613 8.85670 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.027344 B = 0.003687 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.737875 B = 7593.130270 C = 8041.636702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.050 3.950 3 H 0.080 0.920 4 C 0.525 3.475 5 O -0.553 6.553 6 N -0.717 5.717 7 C 0.122 3.878 8 C 0.495 3.505 9 O -0.539 6.539 10 O -0.503 6.503 11 N -0.506 5.506 12 C 0.048 3.952 13 C -0.121 4.121 14 C 0.237 3.763 15 O -0.590 6.590 16 C -0.565 4.565 17 H 0.051 0.949 18 C 0.031 3.969 19 N -0.909 5.909 20 Si 0.960 3.040 21 H -0.277 1.277 22 H -0.279 1.279 23 H -0.269 1.269 24 C 0.067 3.933 25 H 0.093 0.907 26 H 0.080 0.920 27 H 0.060 0.940 28 H 0.418 0.582 29 H 0.120 0.880 30 H 0.115 0.885 31 H 0.436 0.564 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.370 0.630 37 H 0.269 0.731 38 H 0.044 0.956 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.425 4.652 17.831 20.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.062 4.062 3 H 0.098 0.902 4 C 0.311 3.689 5 O -0.429 6.429 6 N -0.376 5.376 7 C -0.002 4.002 8 C 0.338 3.662 9 O -0.429 6.429 10 O -0.316 6.316 11 N -0.231 5.231 12 C -0.080 4.080 13 C -0.160 4.160 14 C 0.197 3.803 15 O -0.398 6.398 16 C -0.604 4.604 17 H 0.069 0.931 18 C -0.170 4.170 19 N -0.548 5.548 20 Si 0.785 3.215 21 H -0.203 1.203 22 H -0.204 1.204 23 H -0.194 1.194 24 C -0.060 4.060 25 H 0.111 0.889 26 H 0.099 0.901 27 H 0.079 0.921 28 H 0.257 0.743 29 H 0.138 0.862 30 H 0.133 0.867 31 H 0.299 0.701 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.218 0.782 37 H 0.078 0.922 38 H 0.062 0.938 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.178 3.385 17.981 20.470 hybrid contribution 0.820 1.741 -0.737 2.061 sum -8.358 5.126 17.245 19.837 Atomic orbital electron populations 1.21867 0.89522 1.03417 1.04568 1.21918 0.99066 0.96197 0.89007 0.90207 1.20726 0.79371 0.84173 0.84586 1.90745 1.38044 1.27277 1.86814 1.45616 1.54966 1.33193 1.03777 1.20649 1.02082 0.97370 0.80144 1.22952 0.76171 0.81498 0.85590 1.90731 1.37376 1.27320 1.87505 1.84451 1.71724 1.58963 1.16510 1.64535 1.04505 1.52890 1.01201 1.22866 0.97538 0.98221 0.89332 1.22721 0.96094 1.00140 0.97010 1.19618 0.91910 0.78706 0.90021 1.86190 1.96886 1.25832 1.30844 1.21834 1.09927 1.34521 0.94074 0.93083 1.25691 0.99457 0.95212 0.96631 1.69824 1.38604 1.42283 1.04127 0.85598 0.79677 0.79097 0.77129 1.20302 1.20424 1.19423 1.22965 0.88342 0.97759 0.96956 0.88877 0.90119 0.92134 0.74301 0.86241 0.86686 0.70072 0.92148 0.90162 0.93283 0.93285 0.78230 0.92177 0.93765 0.92427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 8.88 71.98 0.64 -2.26 16 2 C 0.05 1.47 2.24 44.17 0.10 1.57 16 3 H 0.08 2.12 7.89 -2.39 -0.02 2.10 16 4 C 0.53 15.91 6.96 87.66 0.61 16.52 16 5 O -0.55 -22.16 14.88 -3.02 -0.05 -22.21 16 6 N -0.72 -15.31 5.43 -466.81 -2.54 -17.85 16 7 C 0.12 2.14 6.27 85.64 0.54 2.68 16 8 C 0.49 7.37 8.40 71.24 0.60 7.97 16 9 O -0.54 -10.65 16.43 21.95 0.36 -10.29 16 10 O -0.50 -4.78 13.42 -51.32 -0.69 -5.47 16 11 N -0.51 -19.96 4.79 -862.23 -4.13 -24.09 16 12 C 0.05 1.76 5.25 86.44 0.45 2.22 16 13 C -0.12 -5.66 5.26 31.47 0.17 -5.49 16 14 C 0.24 12.48 0.95 -10.33 -0.01 12.47 16 15 O -0.59 -33.69 13.09 -148.98 -1.95 -35.64 16 16 C -0.57 -31.59 8.14 25.60 0.21 -31.38 16 17 H 0.05 2.84 7.78 -2.91 -0.02 2.82 16 18 C 0.03 1.67 5.28 84.66 0.45 2.12 16 19 N -0.91 -49.79 11.02 21.45 0.24 -49.55 16 20 Si 0.96 42.95 29.54 68.60 2.03 44.98 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 22 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 23 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 24 C 0.07 3.16 5.01 86.65 0.43 3.59 16 25 H 0.09 1.37 7.67 -2.39 -0.02 1.35 16 26 H 0.08 1.61 6.48 -2.39 -0.02 1.59 16 27 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 28 H 0.42 7.48 6.93 -92.71 -0.64 6.84 16 29 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.44 0.28 9.10 -74.06 -0.67 -0.39 16 32 H 0.06 1.88 7.14 -2.39 -0.02 1.86 16 33 H 0.08 2.75 8.14 -2.38 -0.02 2.73 16 34 H 0.05 2.43 7.98 -2.39 -0.02 2.41 16 35 H 0.05 2.36 7.84 -2.39 -0.02 2.34 16 36 H 0.37 21.10 7.48 -74.05 -0.55 20.54 16 37 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 38 H 0.04 1.97 7.75 -2.39 -0.02 1.95 16 39 H 0.06 2.99 6.95 -2.39 -0.02 2.98 16 Total: -1.00 -73.15 324.43 -3.31 -76.46 By element: Atomic # 1 Polarization: 34.43 SS G_CDS: -0.76 Total: 33.66 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: 4.18 Total: 10.00 kcal Atomic # 7 Polarization: -85.06 SS G_CDS: -6.43 Total: -91.49 kcal Atomic # 8 Polarization: -71.29 SS G_CDS: -2.32 Total: -73.61 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -73.15 -3.31 -76.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609634265.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.891 kcal (2) G-P(sol) polarization free energy of solvation -73.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds