Wall clock time and date at job start Tue Mar 31 2020 03:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46904 * 110.99795 * 2 1 4 4 C 1.50702 * 109.47028 * 66.04375 * 3 2 1 5 5 H 1.07989 * 120.00232 * 0.02562 * 4 3 2 6 6 C 1.37882 * 119.99438 * 180.02562 * 4 3 2 7 7 N 1.31509 * 120.00276 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99488 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47436 * 90.00039 * 8 6 4 10 10 H 1.48501 * 109.46860 * 209.99895 * 8 6 4 11 11 H 1.48503 * 109.47278 * 329.99830 * 8 6 4 12 12 C 1.46902 * 111.00071 * 236.04847 * 2 1 3 13 13 C 1.53000 * 109.46751 * 199.83123 * 12 2 1 14 14 H 1.09002 * 109.46963 * 300.49792 * 13 12 2 15 15 O 1.42893 * 109.47380 * 60.50381 * 13 12 2 16 16 C 1.53007 * 109.46647 * 180.50106 * 13 12 2 17 17 N 1.46903 * 109.46605 * 179.97438 * 16 13 12 18 18 C 1.47481 * 110.99970 * 265.96995 * 17 16 13 19 19 C 1.53509 * 87.93098 * 221.30017 * 18 17 16 20 20 C 1.53004 * 114.34224 * 139.68704 * 19 18 17 21 21 C 1.50703 * 114.17096 * 272.37592 * 19 18 17 22 22 O 1.20820 * 120.00064 * 93.83893 * 21 19 18 23 23 O 1.34230 * 119.99737 * 273.84366 * 21 19 18 24 24 C 1.47483 * 110.99742 * 170.00002 * 17 16 13 25 25 H 1.08996 * 109.46746 * 178.41273 * 1 2 3 26 26 H 1.08999 * 109.46872 * 298.41620 * 1 2 3 27 27 H 1.08997 * 109.46723 * 58.41819 * 1 2 3 28 28 H 1.08997 * 109.47134 * 186.04933 * 3 2 1 29 29 H 1.09002 * 109.47069 * 306.04511 * 3 2 1 30 30 H 0.97005 * 119.99921 * 179.97438 * 7 6 4 31 31 H 1.08996 * 109.46608 * 319.82896 * 12 2 1 32 32 H 1.09001 * 109.47150 * 79.82838 * 12 2 1 33 33 H 0.96699 * 114.00248 * 59.99565 * 15 13 12 34 34 H 1.08992 * 109.47189 * 299.99651 * 16 13 12 35 35 H 1.08992 * 109.47114 * 60.00178 * 16 13 12 36 36 H 1.09000 * 113.47468 * 336.06576 * 18 17 16 37 37 H 1.09002 * 113.47541 * 106.53073 * 18 17 16 38 38 H 1.09000 * 109.46905 * 326.06850 * 20 19 18 39 39 H 1.08991 * 109.47706 * 86.07394 * 20 19 18 40 40 H 1.09002 * 109.46808 * 206.07833 * 20 19 18 41 41 H 0.96703 * 116.99643 * 179.97438 * 23 21 19 42 42 H 1.09001 * 113.47476 * 253.46950 * 24 17 16 43 43 H 1.09006 * 113.47455 * 23.93935 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0746 1.5113 2.0487 6 6 2.0267 3.3496 1.5284 7 7 2.7119 4.0020 0.6149 8 14 1.5829 4.1869 3.1381 9 1 2.6603 3.9509 4.1325 10 1 1.4299 5.6465 2.9111 11 1 0.3055 3.6291 3.6505 12 6 1.9955 -0.7659 -1.1376 13 6 3.4451 -1.1661 -0.8558 14 1 4.0462 -0.2699 -0.7024 15 8 3.4951 -1.9799 0.3178 16 6 3.9974 -1.9532 -2.0460 17 7 5.3895 -2.3369 -1.7756 18 6 6.3288 -1.3483 -2.3372 19 6 7.2074 -2.5229 -2.7898 20 6 7.8266 -2.3490 -4.1781 21 6 8.1953 -2.9902 -1.7520 22 8 7.9071 -3.8988 -1.0095 23 8 9.3953 -2.3971 -1.6526 24 6 5.8797 -3.2933 -2.7856 25 1 -0.3633 -1.0272 -0.0285 26 1 -0.3633 0.4890 0.9038 27 1 -0.3633 0.5382 -0.8755 28 1 3.0797 1.3445 -0.1083 29 1 1.5611 1.9274 -0.8309 30 1 2.9858 4.9184 0.7765 31 1 1.3926 -1.6624 -1.2821 32 1 1.9563 -0.1526 -2.0379 33 1 2.9812 -2.7964 0.2524 34 1 3.3964 -2.8494 -2.1994 35 1 3.9594 -1.3325 -2.9411 36 1 5.9117 -0.7741 -3.1644 37 1 6.8000 -0.7192 -1.5819 38 1 7.1358 -1.7997 -4.8177 39 1 8.7612 -1.7949 -4.0924 40 1 8.0236 -3.3288 -4.6133 41 1 9.9951 -2.7312 -0.9716 42 1 5.9703 -4.3127 -2.4104 43 1 5.3427 -3.2381 -3.7326 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610115533.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:33 Heat of formation + Delta-G solvation = -94.663843 kcal Electronic energy + Delta-G solvation = -23385.112259 eV Core-core repulsion = 19852.884065 eV Total energy + Delta-G solvation = -3532.228193 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.45237 -39.30668 -37.58050 -36.16277 -35.34026 -32.67670 -32.43500 -29.83927 -27.39632 -26.89024 -26.28611 -24.87241 -23.85745 -22.58201 -21.14554 -20.03723 -19.63223 -17.95065 -16.71116 -16.58277 -16.18739 -16.06863 -15.40609 -15.07683 -14.86397 -14.68142 -14.34835 -14.06749 -13.68091 -13.45536 -13.10549 -12.96904 -12.70032 -12.50442 -12.37431 -11.93776 -11.68877 -11.45025 -11.36480 -11.29030 -11.07008 -10.90013 -10.74817 -10.63015 -10.57848 -10.52176 -10.33626 -9.74226 -9.50430 -9.11161 -8.86782 -8.38713 -7.16781 -5.99129 -3.99177 2.06587 2.76076 3.36024 3.41501 3.45302 3.74204 3.87990 4.34903 4.46445 4.65504 4.75042 4.89784 5.05384 5.06919 5.19023 5.28254 5.33049 5.36381 5.42088 5.46398 5.52732 5.62670 5.66783 5.69901 5.78496 5.81694 6.04994 6.10060 6.12101 6.35823 6.36144 6.58216 6.74025 6.85819 7.30502 7.33446 7.79021 7.84173 8.12005 8.21771 8.32824 8.59636 9.08122 9.64651 11.12133 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.019265 B = 0.003615 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.033708 B = 7743.901780 C = 8419.140260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.531 5.531 3 C 0.193 3.807 4 C -0.503 4.503 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.901 5.901 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.274 1.274 12 C 0.025 3.975 13 C 0.127 3.873 14 H 0.099 0.901 15 O -0.528 6.528 16 C -0.014 4.014 17 N -0.449 5.449 18 C 0.017 3.983 19 C -0.093 4.093 20 C -0.134 4.134 21 C 0.509 3.491 22 O -0.496 6.496 23 O -0.515 6.515 24 C 0.019 3.981 25 H 0.042 0.958 26 H 0.073 0.927 27 H 0.009 0.991 28 H 0.030 0.970 29 H -0.012 1.012 30 H 0.260 0.740 31 H 0.059 0.941 32 H 0.030 0.970 33 H 0.359 0.641 34 H 0.076 0.924 35 H 0.054 0.946 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.411 0.589 42 H 0.098 0.902 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.763 -14.071 -12.156 20.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.255 5.255 3 C 0.068 3.932 4 C -0.542 4.542 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.541 5.541 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.199 1.199 12 C -0.105 4.105 13 C 0.066 3.934 14 H 0.117 0.883 15 O -0.330 6.330 16 C -0.144 4.144 17 N -0.171 5.171 18 C -0.112 4.112 19 C -0.095 4.095 20 C -0.192 4.192 21 C 0.350 3.650 22 O -0.382 6.382 23 O -0.327 6.327 24 C -0.110 4.110 25 H 0.061 0.939 26 H 0.092 0.908 27 H 0.028 0.972 28 H 0.048 0.952 29 H 0.006 0.994 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.048 0.952 33 H 0.204 0.796 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.106 0.894 37 H 0.113 0.887 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.084 0.916 41 H 0.270 0.730 42 H 0.116 0.884 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 8.992 -13.897 -10.904 19.821 hybrid contribution -0.586 0.635 -0.641 1.076 sum 8.406 -13.262 -11.544 19.489 Atomic orbital electron populations 1.22199 0.88865 0.98846 1.00886 1.62019 1.06473 1.17791 1.39183 1.19768 0.95415 0.81462 0.96519 1.21165 1.34563 0.96765 1.01678 0.91865 1.24978 0.95346 0.97362 0.96962 1.69954 1.38670 1.11424 1.34082 0.86498 0.78897 0.78290 0.83728 1.20581 1.21389 1.19878 1.22707 0.96189 0.98028 0.93553 1.21729 0.94650 0.93259 0.83770 0.88309 1.86708 1.73557 1.35498 1.37274 1.23513 0.91228 1.00550 0.99068 1.69112 1.02536 1.05902 1.39518 1.24069 0.93041 0.94358 0.99753 1.21642 0.92787 1.00557 0.94496 1.21705 1.01995 1.02798 0.92670 1.22278 0.80551 0.79369 0.82789 1.90731 1.76937 1.28753 1.41771 1.84486 1.27186 1.62416 1.58640 1.23904 0.91304 0.99812 0.96016 0.93881 0.90796 0.97238 0.95200 0.99443 0.93017 0.92231 0.95229 0.79625 0.90554 0.92797 0.89443 0.88736 0.91026 0.90692 0.91632 0.73042 0.88357 0.90087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.80 9.31 60.07 0.56 1.36 16 2 N -0.53 -11.71 4.56 -244.36 -1.11 -12.82 16 3 C 0.19 5.14 4.55 -4.97 -0.02 5.12 16 4 C -0.50 -14.55 8.54 -34.44 -0.29 -14.84 16 5 H 0.06 1.82 7.10 -52.49 -0.37 1.45 16 6 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 7 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 8 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 9 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 12 C 0.03 0.44 4.66 -3.82 -0.02 0.42 16 13 C 0.13 2.14 3.30 -26.73 -0.09 2.05 16 14 H 0.10 2.00 6.78 -51.93 -0.35 1.65 16 15 O -0.53 -9.77 13.08 -35.23 -0.46 -10.23 16 16 C -0.01 -0.18 4.48 -3.82 -0.02 -0.20 16 17 N -0.45 -5.92 6.09 -244.59 -1.49 -7.41 16 18 C 0.02 0.19 6.86 -7.54 -0.05 0.14 16 19 C -0.09 -0.93 1.47 -155.13 -0.23 -1.16 16 20 C -0.13 -0.94 9.25 37.16 0.34 -0.60 16 21 C 0.51 6.01 7.35 36.01 0.26 6.27 16 22 O -0.50 -7.50 16.73 -18.75 -0.31 -7.82 16 23 O -0.52 -4.70 13.00 -39.26 -0.51 -5.21 16 24 C 0.02 0.19 6.60 -7.54 -0.05 0.14 16 25 H 0.04 0.71 7.94 -51.93 -0.41 0.30 16 26 H 0.07 1.57 6.90 -51.93 -0.36 1.21 16 27 H 0.01 0.18 8.13 -51.93 -0.42 -0.24 16 28 H 0.03 0.85 6.63 -51.93 -0.34 0.50 16 29 H -0.01 -0.34 8.11 -51.93 -0.42 -0.76 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.06 0.89 7.80 -51.93 -0.41 0.48 16 32 H 0.03 0.52 8.00 -51.93 -0.42 0.10 16 33 H 0.36 5.22 9.05 45.56 0.41 5.64 16 34 H 0.08 0.84 8.08 -51.93 -0.42 0.42 16 35 H 0.05 0.61 7.30 -51.93 -0.38 0.23 16 36 H 0.09 0.85 7.22 -51.93 -0.38 0.48 16 37 H 0.09 1.23 8.11 -51.93 -0.42 0.81 16 38 H 0.07 0.42 7.91 -51.93 -0.41 0.01 16 39 H 0.07 0.52 7.81 -51.93 -0.41 0.12 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.41 2.10 9.10 45.56 0.41 2.52 16 42 H 0.10 1.11 7.51 -51.93 -0.39 0.72 16 43 H 0.08 0.64 7.87 -51.93 -0.41 0.23 16 LS Contribution 353.23 15.07 5.32 5.32 Total: -1.00 -35.62 353.23 -7.99 -43.62 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -5.44 Total: 3.61 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: 0.30 Total: 0.20 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: -1.87 Total: -46.65 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -1.28 Total: -23.26 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.62 -7.99 -43.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610115533.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.049 kcal (2) G-P(sol) polarization free energy of solvation -35.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds