Wall clock time and date at job start Tue Mar 31 2020 03:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46904 * 110.99795 * 2 1 4 4 C 1.50702 * 109.47028 * 66.04375 * 3 2 1 5 5 H 1.07989 * 120.00232 * 0.02562 * 4 3 2 6 6 C 1.37882 * 119.99438 * 180.02562 * 4 3 2 7 7 N 1.31509 * 120.00276 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99488 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47436 * 90.00039 * 8 6 4 10 10 H 1.48501 * 109.46860 * 209.99895 * 8 6 4 11 11 H 1.48503 * 109.47278 * 329.99830 * 8 6 4 12 12 C 1.46902 * 111.00071 * 236.04847 * 2 1 3 13 13 C 1.53000 * 109.46751 * 199.83123 * 12 2 1 14 14 H 1.09002 * 109.46963 * 300.49792 * 13 12 2 15 15 O 1.42893 * 109.47380 * 60.50381 * 13 12 2 16 16 C 1.53007 * 109.46647 * 180.50106 * 13 12 2 17 17 N 1.46903 * 109.46605 * 179.97438 * 16 13 12 18 18 C 1.47481 * 110.99970 * 265.96995 * 17 16 13 19 19 C 1.53509 * 87.93098 * 221.30017 * 18 17 16 20 20 C 1.53004 * 114.34224 * 139.68704 * 19 18 17 21 21 C 1.50703 * 114.17096 * 272.37592 * 19 18 17 22 22 O 1.20820 * 120.00064 * 93.83893 * 21 19 18 23 23 O 1.34230 * 119.99737 * 273.84366 * 21 19 18 24 24 C 1.47483 * 110.99742 * 170.00002 * 17 16 13 25 25 H 1.08996 * 109.46746 * 178.41273 * 1 2 3 26 26 H 1.08999 * 109.46872 * 298.41620 * 1 2 3 27 27 H 1.08997 * 109.46723 * 58.41819 * 1 2 3 28 28 H 1.08997 * 109.47134 * 186.04933 * 3 2 1 29 29 H 1.09002 * 109.47069 * 306.04511 * 3 2 1 30 30 H 0.97005 * 119.99921 * 179.97438 * 7 6 4 31 31 H 1.08996 * 109.46608 * 319.82896 * 12 2 1 32 32 H 1.09001 * 109.47150 * 79.82838 * 12 2 1 33 33 H 0.96699 * 114.00248 * 59.99565 * 15 13 12 34 34 H 1.08992 * 109.47189 * 299.99651 * 16 13 12 35 35 H 1.08992 * 109.47114 * 60.00178 * 16 13 12 36 36 H 1.09000 * 113.47468 * 336.06576 * 18 17 16 37 37 H 1.09002 * 113.47541 * 106.53073 * 18 17 16 38 38 H 1.09000 * 109.46905 * 326.06850 * 20 19 18 39 39 H 1.08991 * 109.47706 * 86.07394 * 20 19 18 40 40 H 1.09002 * 109.46808 * 206.07833 * 20 19 18 41 41 H 0.96703 * 116.99643 * 179.97438 * 23 21 19 42 42 H 1.09001 * 113.47476 * 253.46950 * 24 17 16 43 43 H 1.09006 * 113.47455 * 23.93935 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0746 1.5113 2.0487 6 6 2.0267 3.3496 1.5284 7 7 2.7119 4.0020 0.6149 8 14 1.5829 4.1869 3.1381 9 1 2.6603 3.9509 4.1325 10 1 1.4299 5.6465 2.9111 11 1 0.3055 3.6291 3.6505 12 6 1.9955 -0.7659 -1.1376 13 6 3.4451 -1.1661 -0.8558 14 1 4.0462 -0.2699 -0.7024 15 8 3.4951 -1.9799 0.3178 16 6 3.9974 -1.9532 -2.0460 17 7 5.3895 -2.3369 -1.7756 18 6 6.3288 -1.3483 -2.3372 19 6 7.2074 -2.5229 -2.7898 20 6 7.8266 -2.3490 -4.1781 21 6 8.1953 -2.9902 -1.7520 22 8 7.9071 -3.8988 -1.0095 23 8 9.3953 -2.3971 -1.6526 24 6 5.8797 -3.2933 -2.7856 25 1 -0.3633 -1.0272 -0.0285 26 1 -0.3633 0.4890 0.9038 27 1 -0.3633 0.5382 -0.8755 28 1 3.0797 1.3445 -0.1083 29 1 1.5611 1.9274 -0.8309 30 1 2.9858 4.9184 0.7765 31 1 1.3926 -1.6624 -1.2821 32 1 1.9563 -0.1526 -2.0379 33 1 2.9812 -2.7964 0.2524 34 1 3.3964 -2.8494 -2.1994 35 1 3.9594 -1.3325 -2.9411 36 1 5.9117 -0.7741 -3.1644 37 1 6.8000 -0.7192 -1.5819 38 1 7.1358 -1.7997 -4.8177 39 1 8.7612 -1.7949 -4.0924 40 1 8.0236 -3.3288 -4.6133 41 1 9.9951 -2.7312 -0.9716 42 1 5.9703 -4.3127 -2.4104 43 1 5.3427 -3.2381 -3.7326 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610115533.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:31 Heat of formation + Delta-G solvation = -126.538779 kcal Electronic energy + Delta-G solvation = -23386.494460 eV Core-core repulsion = 19852.884065 eV Total energy + Delta-G solvation = -3533.610394 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -42.32689 -40.26008 -39.03177 -37.09065 -36.92503 -34.60998 -33.59377 -31.05976 -29.37021 -28.05919 -27.14042 -26.07010 -25.32110 -23.97000 -22.32256 -21.71673 -20.46319 -18.84751 -18.62062 -17.58381 -17.48508 -17.21051 -16.71773 -16.46324 -16.21190 -16.02086 -15.61276 -15.37996 -14.98910 -14.88736 -14.39151 -13.97632 -13.80463 -13.68087 -13.40624 -13.21152 -13.12897 -12.93421 -12.60265 -12.56320 -12.51936 -12.35061 -12.34159 -12.19827 -12.02641 -11.56535 -11.46392 -11.44298 -11.33083 -10.70083 -10.61418 -9.80038 -8.93541 -8.21548 -6.30681 1.15425 1.38737 1.41400 1.51738 2.01460 2.39551 2.81152 3.08165 3.11043 3.33322 3.59028 3.70204 3.90838 4.07990 4.18130 4.20486 4.29616 4.38216 4.40238 4.51600 4.58980 4.62949 4.64532 4.72685 4.74938 4.77965 4.87075 4.96987 5.02464 5.07796 5.17503 5.27330 5.30219 5.38759 5.60124 5.64418 5.97704 6.06872 6.35293 6.65999 6.85122 6.99332 7.13361 7.38681 8.89687 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.019265 B = 0.003615 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.033708 B = 7743.901780 C = 8419.140260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.546 5.546 3 C 0.212 3.788 4 C -0.525 4.525 5 H 0.059 0.941 6 C 0.002 3.998 7 N -0.934 5.934 8 Si 0.967 3.033 9 H -0.276 1.276 10 H -0.278 1.278 11 H -0.264 1.264 12 C 0.027 3.973 13 C 0.131 3.869 14 H 0.052 0.948 15 O -0.556 6.556 16 C 0.000 4.000 17 N -0.486 5.486 18 C 0.013 3.987 19 C -0.088 4.088 20 C -0.128 4.128 21 C 0.507 3.493 22 O -0.537 6.537 23 O -0.510 6.510 24 C 0.027 3.973 25 H 0.083 0.917 26 H 0.052 0.948 27 H 0.010 0.990 28 H 0.001 0.999 29 H -0.039 1.039 30 H 0.264 0.736 31 H 0.098 0.902 32 H 0.031 0.969 33 H 0.376 0.624 34 H 0.101 0.899 35 H 0.071 0.929 36 H 0.108 0.892 37 H 0.067 0.933 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.427 0.573 42 H 0.086 0.914 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.196 -15.082 -13.225 21.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.270 5.270 3 C 0.085 3.915 4 C -0.563 4.563 5 H 0.077 0.923 6 C -0.196 4.196 7 N -0.575 5.575 8 Si 0.792 3.208 9 H -0.202 1.202 10 H -0.204 1.204 11 H -0.188 1.188 12 C -0.102 4.102 13 C 0.071 3.929 14 H 0.070 0.930 15 O -0.361 6.361 16 C -0.130 4.130 17 N -0.208 5.208 18 C -0.116 4.116 19 C -0.089 4.089 20 C -0.185 4.185 21 C 0.350 3.650 22 O -0.426 6.426 23 O -0.323 6.323 24 C -0.101 4.101 25 H 0.101 0.899 26 H 0.071 0.929 27 H 0.028 0.972 28 H 0.019 0.981 29 H -0.021 1.021 30 H 0.073 0.927 31 H 0.116 0.884 32 H 0.049 0.951 33 H 0.223 0.777 34 H 0.119 0.881 35 H 0.089 0.911 36 H 0.126 0.874 37 H 0.085 0.915 38 H 0.107 0.893 39 H 0.093 0.907 40 H 0.097 0.903 41 H 0.288 0.712 42 H 0.104 0.896 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 8.436 -14.927 -11.986 20.920 hybrid contribution -0.356 0.918 -0.293 1.027 sum 8.080 -14.009 -12.279 20.306 Atomic orbital electron populations 1.22211 0.87379 1.01108 0.99854 1.61907 1.07954 1.15166 1.41950 1.19358 0.93537 0.83867 0.94702 1.21494 1.34800 0.97475 1.02532 0.92276 1.25893 0.95027 0.98044 1.00655 1.70073 1.39433 1.11875 1.36109 0.85414 0.78927 0.77400 0.79073 1.20186 1.20378 1.18793 1.22810 0.96928 0.98627 0.91831 1.21570 0.93830 0.92344 0.85190 0.92959 1.86651 1.74274 1.36614 1.38549 1.23328 0.91399 1.01070 0.97167 1.69033 1.02843 1.07289 1.41619 1.24119 0.93299 0.94541 0.99621 1.21674 0.92483 0.99282 0.95494 1.21719 1.02139 1.03864 0.90781 1.22756 0.81155 0.78641 0.82493 1.90711 1.77843 1.30684 1.43402 1.84459 1.26739 1.61927 1.59202 1.23939 0.91318 0.98417 0.96460 0.89888 0.92910 0.97169 0.98122 1.02119 0.92694 0.88426 0.95069 0.77676 0.88116 0.91114 0.87413 0.91453 0.89281 0.90749 0.90308 0.71163 0.89550 0.86843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.64 9.31 127.69 1.19 2.83 16 2 N -0.55 -24.12 4.56 -927.02 -4.23 -28.34 16 3 C 0.21 11.67 4.55 85.56 0.39 12.06 16 4 C -0.52 -31.08 8.54 25.60 0.22 -30.86 16 5 H 0.06 3.47 7.10 -2.92 -0.02 3.45 16 6 C 0.00 0.10 5.46 84.66 0.46 0.56 16 7 N -0.93 -57.52 13.29 21.45 0.28 -57.23 16 8 Si 0.97 45.82 29.54 68.60 2.03 47.85 16 9 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 11 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 12 C 0.03 0.92 4.66 86.30 0.40 1.32 16 13 C 0.13 4.44 3.30 30.60 0.10 4.54 16 14 H 0.05 2.25 6.78 -2.39 -0.02 2.23 16 15 O -0.56 -20.58 13.08 -148.98 -1.95 -22.52 16 16 C 0.00 -0.01 4.48 86.30 0.39 0.38 16 17 N -0.49 -12.41 6.09 -927.73 -5.65 -18.06 16 18 C 0.01 0.30 6.86 83.58 0.57 0.87 16 19 C -0.09 -1.63 1.47 -52.58 -0.08 -1.71 16 20 C -0.13 -1.45 9.25 71.98 0.67 -0.79 16 21 C 0.51 11.83 7.35 71.24 0.52 12.35 16 22 O -0.54 -16.47 16.73 21.98 0.37 -16.10 16 23 O -0.51 -9.02 13.00 -51.41 -0.67 -9.69 16 24 C 0.03 0.50 6.60 83.58 0.55 1.05 16 25 H 0.08 2.51 7.94 -2.39 -0.02 2.49 16 26 H 0.05 2.22 6.90 -2.39 -0.02 2.21 16 27 H 0.01 0.38 8.13 -2.39 -0.02 0.36 16 28 H 0.00 0.04 6.63 -2.39 -0.02 0.03 16 29 H -0.04 -2.29 8.11 -2.39 -0.02 -2.31 16 30 H 0.26 15.24 8.31 -92.70 -0.77 14.47 16 31 H 0.10 2.57 7.80 -2.39 -0.02 2.55 16 32 H 0.03 1.06 8.00 -2.39 -0.02 1.04 16 33 H 0.38 10.49 9.05 -74.06 -0.67 9.82 16 34 H 0.10 1.87 8.08 -2.39 -0.02 1.86 16 35 H 0.07 1.42 7.30 -2.39 -0.02 1.40 16 36 H 0.11 1.93 7.22 -2.39 -0.02 1.92 16 37 H 0.07 1.84 8.11 -2.39 -0.02 1.83 16 38 H 0.09 0.73 7.91 -2.39 -0.02 0.71 16 39 H 0.07 0.88 7.81 -2.39 -0.02 0.86 16 40 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.43 4.18 9.10 -74.06 -0.67 3.50 16 42 H 0.09 1.83 7.51 -2.39 -0.02 1.81 16 43 H 0.11 1.35 7.87 -2.38 -0.02 1.33 16 Total: -1.00 -79.89 353.23 -4.75 -84.65 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -0.33 Total: 16.86 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: 5.39 Total: 2.59 kcal Atomic # 7 Polarization: -94.04 SS G_CDS: -9.59 Total: -103.63 kcal Atomic # 8 Polarization: -46.07 SS G_CDS: -2.25 Total: -48.32 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -79.89 -4.75 -84.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610115533.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.893 kcal (2) G-P(sol) polarization free energy of solvation -79.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds