Wall clock time and date at job start Tue Mar 31 2020 03:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46714 * 2 1 4 4 H 1.08997 * 109.47530 * 305.09183 * 3 2 1 5 5 O 1.42904 * 109.47439 * 65.09752 * 3 2 1 6 6 C 1.42902 * 113.99562 * 258.71662 * 5 3 2 7 7 C 1.50704 * 109.46999 * 185.09505 * 3 2 1 8 8 O 1.21280 * 120.00235 * 245.00253 * 7 3 2 9 9 N 1.34775 * 120.00105 * 64.99799 * 7 3 2 10 10 C 1.47155 * 120.98213 * 0.02748 * 9 7 3 11 11 C 1.53296 * 108.38890 * 129.44192 * 10 9 7 12 12 O 1.42960 * 109.22012 * 52.29865 * 11 10 9 13 13 C 1.42962 * 114.17029 * 297.42264 * 12 11 10 14 14 H 1.09003 * 109.55056 * 302.63274 * 13 12 11 15 15 C 1.52996 * 109.51176 * 182.50692 * 13 12 11 16 16 N 1.46499 * 109.47339 * 65.25152 * 15 13 12 17 17 C 1.36939 * 120.00007 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00291 * 359.97438 * 17 16 15 19 19 C 1.38810 * 119.99760 * 179.73007 * 17 16 15 20 20 N 1.31618 * 119.99637 * 180.02562 * 19 17 16 21 21 Si 1.86792 * 120.00174 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47187 * 90.00516 * 21 19 17 23 23 H 1.48504 * 109.47325 * 210.00397 * 21 19 17 24 24 H 1.48500 * 109.47449 * 330.00286 * 21 19 17 25 25 C 1.47148 * 120.98321 * 180.02562 * 9 7 3 26 26 H 1.08996 * 109.47247 * 175.06736 * 1 2 3 27 27 H 1.09005 * 109.47119 * 295.06469 * 1 2 3 28 28 H 1.08999 * 109.47645 * 55.06354 * 1 2 3 29 29 H 1.08999 * 109.46670 * 240.00476 * 2 1 3 30 30 H 1.08998 * 109.47361 * 120.00153 * 2 1 3 31 31 H 1.08997 * 109.46508 * 185.52307 * 6 5 3 32 32 H 1.09000 * 109.47084 * 305.51916 * 6 5 3 33 33 H 1.08994 * 109.47260 * 65.52171 * 6 5 3 34 34 H 1.09003 * 109.67679 * 249.16711 * 10 9 7 35 35 H 1.09000 * 109.68214 * 9.71616 * 10 9 7 36 36 H 1.08999 * 109.51170 * 172.22642 * 11 10 9 37 37 H 1.08997 * 109.50851 * 292.32930 * 11 10 9 38 38 H 1.08999 * 109.47160 * 305.24812 * 15 13 12 39 39 H 1.09004 * 109.46975 * 185.25224 * 15 13 12 40 40 H 0.97001 * 119.99751 * 0.02562 * 16 15 13 41 41 H 0.97002 * 119.99772 * 179.97438 * 20 19 17 42 42 H 1.09000 * 109.68084 * 110.83577 * 25 9 7 43 43 H 1.08994 * 109.71605 * 350.30134 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6040 1.9820 -0.8408 5 8 1.6638 2.0808 1.2220 6 6 0.5300 2.9425 1.1026 7 6 3.5416 1.4445 -0.1262 8 8 4.2262 1.8607 0.7843 9 7 4.1240 0.9836 -1.2508 10 6 3.3144 0.4741 -2.3691 11 6 3.7813 1.1620 -3.6570 12 8 5.1981 1.0167 -3.7810 13 6 5.9444 1.6389 -2.7324 14 1 5.6977 2.6998 -2.6890 15 6 7.4412 1.4729 -3.0023 16 7 7.8029 2.2082 -4.2167 17 6 9.0991 2.2053 -4.6583 18 1 9.8549 1.6613 -4.1112 19 6 9.4408 2.8974 -5.8120 20 7 10.6865 2.8942 -6.2368 21 14 8.1323 3.8321 -6.7625 22 1 8.0479 5.2236 -6.2507 23 1 8.4894 3.8557 -8.2038 24 1 6.8194 3.1603 -6.5888 25 6 5.5882 0.9750 -1.3969 26 1 -0.3633 -1.0238 -0.0884 27 1 -0.3633 0.4354 0.9309 28 1 -0.3634 0.5885 -0.8424 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 0.3683 3.4628 2.0466 32 1 0.7092 3.6712 0.3121 33 1 -0.3520 2.3506 0.8582 34 1 3.4495 -0.6038 -2.4588 35 1 2.2625 0.6993 -2.1932 36 1 3.2915 0.7005 -4.5144 37 1 3.5252 2.2207 -3.6176 38 1 7.6713 0.4158 -3.1355 39 1 8.0083 1.8645 -2.1579 40 1 7.1244 2.6977 -4.7075 41 1 10.9252 3.3776 -7.0432 42 1 5.9519 -0.0525 -1.3890 43 1 6.0427 1.5315 -0.5773 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673258183.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:06 Heat of formation + Delta-G solvation = -98.512332 kcal Electronic energy + Delta-G solvation = -23749.847690 eV Core-core repulsion = 20217.452613 eV Total energy + Delta-G solvation = -3532.395076 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.79868 -38.97720 -37.69133 -35.40303 -34.63167 -33.61721 -32.22321 -30.63592 -29.15114 -28.09350 -26.55076 -25.13235 -23.69414 -22.69507 -21.81444 -20.99103 -19.63026 -17.96610 -17.63845 -17.16366 -16.46853 -16.20660 -15.81982 -15.52192 -15.08218 -14.79071 -14.55777 -14.42255 -14.20057 -13.74899 -13.42566 -13.26974 -12.91277 -12.82174 -12.61834 -12.41536 -12.34046 -12.00139 -11.85024 -11.78426 -11.31243 -11.20153 -11.07708 -10.85591 -10.56243 -10.31788 -10.14635 -10.02184 -9.60041 -9.54678 -8.89176 -8.68199 -7.20997 -5.73977 -3.09311 2.35857 2.43582 3.40732 3.45138 3.46711 3.47843 3.75654 4.08205 4.34747 4.41181 4.51322 4.62922 4.69473 4.74591 4.83644 4.88749 4.94496 4.96099 5.04618 5.14663 5.21955 5.29347 5.31717 5.44850 5.49761 5.53945 5.55629 5.61389 5.72681 5.75730 5.76899 5.92870 6.15168 6.45563 6.58675 6.65071 7.10901 7.27544 7.94217 8.01202 8.44699 9.23738 9.96021 10.16118 11.44385 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.030241 B = 0.003495 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.659274 B = 8010.278761 C = 8144.758244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.145 4.145 3 C 0.075 3.925 4 H 0.087 0.913 5 O -0.356 6.356 6 C 0.024 3.976 7 C 0.511 3.489 8 O -0.516 6.516 9 N -0.613 5.613 10 C 0.067 3.933 11 C 0.044 3.956 12 O -0.360 6.360 13 C 0.069 3.931 14 H 0.063 0.937 15 C 0.168 3.832 16 N -0.751 5.751 17 C -0.243 4.243 18 H 0.091 0.909 19 C 0.005 3.995 20 N -0.935 5.935 21 Si 0.883 3.117 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.274 1.274 25 C 0.087 3.913 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.043 0.957 33 H 0.047 0.953 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.053 0.947 38 H 0.039 0.961 39 H 0.046 0.954 40 H 0.364 0.636 41 H 0.259 0.741 42 H 0.081 0.919 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.761 -5.324 11.294 28.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.183 4.183 3 C 0.013 3.987 4 H 0.105 0.895 5 O -0.273 6.273 6 C -0.073 4.073 7 C 0.298 3.702 8 O -0.391 6.391 9 N -0.349 5.349 10 C -0.056 4.056 11 C -0.035 4.035 12 O -0.278 6.278 13 C 0.010 3.990 14 H 0.081 0.919 15 C 0.040 3.960 16 N -0.396 5.396 17 C -0.373 4.373 18 H 0.109 0.891 19 C -0.191 4.191 20 N -0.583 5.583 21 Si 0.714 3.286 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.200 1.200 25 C -0.036 4.036 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.108 0.892 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.101 0.899 35 H 0.110 0.890 36 H 0.124 0.876 37 H 0.071 0.929 38 H 0.056 0.944 39 H 0.064 0.936 40 H 0.197 0.803 41 H 0.069 0.931 42 H 0.099 0.901 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -24.959 -5.266 11.830 28.118 hybrid contribution -1.235 0.883 -0.914 1.772 sum -26.194 -4.384 10.916 28.714 Atomic orbital electron populations 1.21839 0.94624 1.02448 1.02144 1.22118 0.97229 0.94748 1.04219 1.22015 0.92030 0.95460 0.89168 0.89543 1.88040 1.48240 1.61699 1.29341 1.23028 0.88114 0.93144 1.02965 1.20581 0.90093 0.77586 0.81922 1.90727 1.64717 1.45255 1.38368 1.48122 1.07485 1.63398 1.15928 1.22680 0.95687 1.00030 0.87210 1.22952 0.83708 0.99928 0.96863 1.88153 1.15616 1.76775 1.47260 1.22887 0.94279 0.96041 0.85754 0.91875 1.20604 0.87734 0.96867 0.90809 1.42573 1.08034 1.61004 1.28018 1.19058 0.84493 1.26865 1.06891 0.89118 1.24653 0.95966 1.00502 0.97989 1.69705 1.16218 1.47064 1.25283 0.86542 0.82076 0.80232 0.79791 1.21175 1.21719 1.20027 1.22338 0.79056 1.02875 0.99305 0.91866 0.91933 0.92627 0.89795 0.90178 0.89157 0.93808 0.93416 0.89866 0.88974 0.87618 0.92903 0.94351 0.93646 0.80343 0.93072 0.90052 0.87780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 8.91 37.16 0.33 -0.48 16 2 C -0.15 -1.06 5.21 -26.73 -0.14 -1.20 16 3 C 0.07 0.72 1.85 -27.88 -0.05 0.67 16 4 H 0.09 0.63 6.86 -51.93 -0.36 0.28 16 5 O -0.36 -4.01 9.66 -55.09 -0.53 -4.54 16 6 C 0.02 0.17 10.48 101.05 1.06 1.23 16 7 C 0.51 6.77 7.13 -10.98 -0.08 6.70 16 8 O -0.52 -9.12 15.98 -14.30 -0.23 -9.34 16 9 N -0.61 -7.32 3.02 -172.25 -0.52 -7.84 16 10 C 0.07 0.58 5.04 -3.53 -0.02 0.56 16 11 C 0.04 0.47 6.99 37.31 0.26 0.73 16 12 O -0.36 -5.71 10.33 -35.23 -0.36 -6.07 16 13 C 0.07 1.11 2.81 -26.56 -0.07 1.03 16 14 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 15 C 0.17 3.29 5.93 -4.04 -0.02 3.27 16 16 N -0.75 -18.44 5.36 -59.91 -0.32 -18.76 16 17 C -0.24 -7.05 10.47 -15.06 -0.16 -7.21 16 18 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 19 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 20 N -0.93 -29.83 13.97 55.49 0.78 -29.05 16 21 Si 0.88 22.55 27.73 -169.99 -4.71 17.83 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 24 H -0.27 -6.66 6.52 56.52 0.37 -6.29 16 25 C 0.09 1.19 5.93 -3.51 -0.02 1.17 16 26 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.36 6.54 -51.93 -0.34 0.02 16 28 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.08 0.51 5.46 -51.93 -0.28 0.22 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.04 0.28 8.00 -51.93 -0.42 -0.13 16 33 H 0.05 0.25 6.03 -51.93 -0.31 -0.06 16 34 H 0.08 0.65 8.08 -51.93 -0.42 0.23 16 35 H 0.09 0.53 4.98 -51.93 -0.26 0.27 16 36 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.36 8.84 5.53 -40.82 -0.23 8.61 16 41 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 42 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.10 1.53 7.08 -51.93 -0.37 1.16 16 LS Contribution 339.36 15.07 5.11 5.11 Total: -1.00 -36.50 339.36 -6.60 -43.09 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -6.80 Total: 3.07 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: 0.99 Total: 6.51 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: -0.07 Total: -55.65 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -1.12 Total: -19.96 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.71 Total: 17.83 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -36.50 -6.60 -43.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673258183.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.418 kcal (2) G-P(sol) polarization free energy of solvation -36.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds