Wall clock time and date at job start Tue Mar 31 2020 03:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46714 * 2 1 4 4 H 1.08997 * 109.47530 * 305.09183 * 3 2 1 5 5 O 1.42904 * 109.47439 * 65.09752 * 3 2 1 6 6 C 1.42902 * 113.99562 * 258.71662 * 5 3 2 7 7 C 1.50704 * 109.46999 * 185.09505 * 3 2 1 8 8 O 1.21280 * 120.00235 * 245.00253 * 7 3 2 9 9 N 1.34775 * 120.00105 * 64.99799 * 7 3 2 10 10 C 1.47155 * 120.98213 * 0.02748 * 9 7 3 11 11 C 1.53296 * 108.38890 * 129.44192 * 10 9 7 12 12 O 1.42960 * 109.22012 * 52.29865 * 11 10 9 13 13 C 1.42962 * 114.17029 * 297.42264 * 12 11 10 14 14 H 1.09003 * 109.55056 * 302.63274 * 13 12 11 15 15 C 1.52996 * 109.51176 * 182.50692 * 13 12 11 16 16 N 1.46499 * 109.47339 * 65.25152 * 15 13 12 17 17 C 1.36939 * 120.00007 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00291 * 359.97438 * 17 16 15 19 19 C 1.38810 * 119.99760 * 179.73007 * 17 16 15 20 20 N 1.31618 * 119.99637 * 180.02562 * 19 17 16 21 21 Si 1.86792 * 120.00174 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47187 * 90.00516 * 21 19 17 23 23 H 1.48504 * 109.47325 * 210.00397 * 21 19 17 24 24 H 1.48500 * 109.47449 * 330.00286 * 21 19 17 25 25 C 1.47148 * 120.98321 * 180.02562 * 9 7 3 26 26 H 1.08996 * 109.47247 * 175.06736 * 1 2 3 27 27 H 1.09005 * 109.47119 * 295.06469 * 1 2 3 28 28 H 1.08999 * 109.47645 * 55.06354 * 1 2 3 29 29 H 1.08999 * 109.46670 * 240.00476 * 2 1 3 30 30 H 1.08998 * 109.47361 * 120.00153 * 2 1 3 31 31 H 1.08997 * 109.46508 * 185.52307 * 6 5 3 32 32 H 1.09000 * 109.47084 * 305.51916 * 6 5 3 33 33 H 1.08994 * 109.47260 * 65.52171 * 6 5 3 34 34 H 1.09003 * 109.67679 * 249.16711 * 10 9 7 35 35 H 1.09000 * 109.68214 * 9.71616 * 10 9 7 36 36 H 1.08999 * 109.51170 * 172.22642 * 11 10 9 37 37 H 1.08997 * 109.50851 * 292.32930 * 11 10 9 38 38 H 1.08999 * 109.47160 * 305.24812 * 15 13 12 39 39 H 1.09004 * 109.46975 * 185.25224 * 15 13 12 40 40 H 0.97001 * 119.99751 * 0.02562 * 16 15 13 41 41 H 0.97002 * 119.99772 * 179.97438 * 20 19 17 42 42 H 1.09000 * 109.68084 * 110.83577 * 25 9 7 43 43 H 1.08994 * 109.71605 * 350.30134 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6040 1.9820 -0.8408 5 8 1.6638 2.0808 1.2220 6 6 0.5300 2.9425 1.1026 7 6 3.5416 1.4445 -0.1262 8 8 4.2262 1.8607 0.7843 9 7 4.1240 0.9836 -1.2508 10 6 3.3144 0.4741 -2.3691 11 6 3.7813 1.1620 -3.6570 12 8 5.1981 1.0167 -3.7810 13 6 5.9444 1.6389 -2.7324 14 1 5.6977 2.6998 -2.6890 15 6 7.4412 1.4729 -3.0023 16 7 7.8029 2.2082 -4.2167 17 6 9.0991 2.2053 -4.6583 18 1 9.8549 1.6613 -4.1112 19 6 9.4408 2.8974 -5.8120 20 7 10.6865 2.8942 -6.2368 21 14 8.1323 3.8321 -6.7625 22 1 8.0479 5.2236 -6.2507 23 1 8.4894 3.8557 -8.2038 24 1 6.8194 3.1603 -6.5888 25 6 5.5882 0.9750 -1.3969 26 1 -0.3633 -1.0238 -0.0884 27 1 -0.3633 0.4354 0.9309 28 1 -0.3634 0.5885 -0.8424 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 0.3683 3.4628 2.0466 32 1 0.7092 3.6712 0.3121 33 1 -0.3520 2.3506 0.8582 34 1 3.4495 -0.6038 -2.4588 35 1 2.2625 0.6993 -2.1932 36 1 3.2915 0.7005 -4.5144 37 1 3.5252 2.2207 -3.6176 38 1 7.6713 0.4158 -3.1355 39 1 8.0083 1.8645 -2.1579 40 1 7.1244 2.6977 -4.7075 41 1 10.9252 3.3776 -7.0432 42 1 5.9519 -0.0525 -1.3890 43 1 6.0427 1.5315 -0.5773 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673258183.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:04 Heat of formation + Delta-G solvation = -126.157005 kcal Electronic energy + Delta-G solvation = -23751.046453 eV Core-core repulsion = 20217.452613 eV Total energy + Delta-G solvation = -3533.593839 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.74868 -39.95592 -38.60181 -36.88994 -35.97886 -34.35950 -33.88711 -32.27233 -29.90677 -29.14605 -27.58580 -26.19157 -24.76958 -23.97062 -22.97964 -22.21052 -20.55385 -19.77738 -18.73476 -18.07754 -17.51234 -17.14432 -16.82185 -16.57832 -16.21922 -16.16637 -15.64216 -15.60252 -15.16677 -14.80968 -14.64603 -14.47566 -14.18280 -14.08957 -13.73912 -13.46211 -13.21744 -12.99852 -12.86879 -12.66237 -12.59664 -12.36065 -12.29615 -12.05498 -11.87383 -11.79293 -11.62885 -11.25963 -11.03242 -11.00721 -10.41667 -9.70163 -9.33286 -8.03887 -5.37946 1.37199 1.39459 1.40865 1.49052 1.54693 2.48238 2.68740 2.80848 3.27766 3.29735 3.40071 3.73636 3.79756 3.83813 3.86297 4.00817 4.03996 4.23830 4.27435 4.31137 4.38705 4.44925 4.49413 4.56557 4.63374 4.72417 4.79551 4.82852 4.83759 4.90878 5.03547 5.05574 5.15083 5.19004 5.38497 5.72501 5.98260 6.16327 6.20662 6.24759 6.97538 7.05379 7.80109 8.00531 9.17544 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.030241 B = 0.003495 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.659274 B = 8010.278761 C = 8144.758244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.140 4.140 3 C 0.078 3.922 4 H 0.117 0.883 5 O -0.391 6.391 6 C 0.017 3.983 7 C 0.504 3.496 8 O -0.573 6.573 9 N -0.610 5.610 10 C 0.067 3.933 11 C 0.034 3.966 12 O -0.387 6.387 13 C 0.086 3.914 14 H 0.057 0.943 15 C 0.162 3.838 16 N -0.753 5.753 17 C -0.238 4.238 18 H 0.058 0.942 19 C -0.064 4.064 20 N -0.983 5.983 21 Si 0.957 3.043 22 H -0.278 1.278 23 H -0.292 1.292 24 H -0.252 1.252 25 C 0.093 3.907 26 H 0.072 0.928 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.100 0.900 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.050 0.950 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.129 0.871 36 H 0.135 0.865 37 H 0.056 0.944 38 H 0.036 0.964 39 H 0.047 0.953 40 H 0.367 0.633 41 H 0.259 0.741 42 H 0.089 0.911 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.801 -5.583 10.506 32.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.178 4.178 3 C 0.017 3.983 4 H 0.134 0.866 5 O -0.309 6.309 6 C -0.078 4.078 7 C 0.293 3.707 8 O -0.451 6.451 9 N -0.345 5.345 10 C -0.054 4.054 11 C -0.043 4.043 12 O -0.306 6.306 13 C 0.027 3.973 14 H 0.075 0.925 15 C 0.035 3.965 16 N -0.399 5.399 17 C -0.368 4.368 18 H 0.076 0.924 19 C -0.255 4.255 20 N -0.634 5.634 21 Si 0.784 3.216 22 H -0.204 1.204 23 H -0.219 1.219 24 H -0.177 1.177 25 C -0.031 4.031 26 H 0.091 0.909 27 H 0.074 0.926 28 H 0.093 0.907 29 H 0.119 0.881 30 H 0.078 0.922 31 H 0.111 0.889 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.117 0.883 35 H 0.147 0.853 36 H 0.152 0.848 37 H 0.074 0.926 38 H 0.054 0.946 39 H 0.065 0.935 40 H 0.200 0.800 41 H 0.068 0.932 42 H 0.107 0.893 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -29.067 -5.556 11.051 31.589 hybrid contribution 0.033 0.902 -0.606 1.087 sum -29.033 -4.654 10.446 31.204 Atomic orbital electron populations 1.21832 0.92768 1.03474 1.02651 1.22118 0.98712 0.92916 1.04069 1.22159 0.89110 0.97234 0.89777 0.86587 1.88003 1.49803 1.62546 1.30532 1.23231 0.87751 0.93247 1.03583 1.21429 0.91751 0.76272 0.81241 1.90697 1.66220 1.47809 1.40373 1.48205 1.06803 1.62807 1.16652 1.22949 0.96977 1.00612 0.84877 1.23323 0.80996 1.00898 0.99045 1.88095 1.18516 1.76791 1.47195 1.22481 0.91873 0.95978 0.86956 0.92505 1.20738 0.90939 0.95911 0.88864 1.42554 1.06371 1.61587 1.29396 1.19056 0.85816 1.25558 1.06412 0.92352 1.25521 0.98405 1.02176 0.99400 1.69887 1.18729 1.48692 1.26073 0.85373 0.79790 0.78838 0.77636 1.20401 1.21877 1.17677 1.22083 0.80833 1.02763 0.97373 0.90865 0.92607 0.90700 0.88137 0.92197 0.88883 0.93102 0.91109 0.88303 0.85292 0.84763 0.92564 0.94614 0.93530 0.79958 0.93225 0.89259 0.89380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 8.91 71.98 0.64 -0.38 16 2 C -0.14 -1.61 5.21 30.59 0.16 -1.45 16 3 C 0.08 1.30 1.85 29.85 0.06 1.36 16 4 H 0.12 1.20 6.86 -2.39 -0.02 1.18 16 5 O -0.39 -8.25 9.66 -129.99 -1.26 -9.51 16 6 C 0.02 0.21 10.48 113.37 1.19 1.40 16 7 C 0.50 12.76 7.13 87.66 0.62 13.38 16 8 O -0.57 -20.57 15.98 15.96 0.25 -20.32 16 9 N -0.61 -13.35 3.02 -817.27 -2.47 -15.82 16 10 C 0.07 0.90 5.04 86.35 0.44 1.33 16 11 C 0.03 0.60 6.99 72.08 0.50 1.11 16 12 O -0.39 -11.37 10.33 -148.98 -1.54 -12.91 16 13 C 0.09 2.67 2.81 30.71 0.09 2.76 16 14 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 15 C 0.16 6.39 5.93 86.38 0.51 6.90 16 16 N -0.75 -36.82 5.36 -343.45 -1.84 -38.66 16 17 C -0.24 -14.03 10.47 84.03 0.88 -13.15 16 18 H 0.06 3.74 8.06 -2.91 -0.02 3.72 16 19 C -0.06 -3.84 5.50 84.86 0.47 -3.38 16 20 N -0.98 -64.24 13.97 21.65 0.30 -63.94 16 21 Si 0.96 46.45 27.73 68.60 1.90 48.35 16 22 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 23 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 24 H -0.25 -11.19 6.52 99.48 0.65 -10.54 16 25 C 0.09 2.50 5.93 86.37 0.51 3.01 16 26 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 27 H 0.05 0.47 6.54 -2.38 -0.02 0.46 16 28 H 0.07 0.24 8.14 -2.39 -0.02 0.22 16 29 H 0.10 0.79 5.46 -2.39 -0.01 0.77 16 30 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.05 0.53 8.00 -2.39 -0.02 0.51 16 33 H 0.07 0.51 6.03 -2.39 -0.01 0.49 16 34 H 0.10 1.10 8.08 -2.39 -0.02 1.08 16 35 H 0.13 0.79 4.98 -2.39 -0.01 0.77 16 36 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.37 17.29 5.53 -92.71 -0.51 16.77 16 41 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 42 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.09 2.66 7.08 -2.39 -0.02 2.64 16 Total: -1.00 -82.21 339.36 1.86 -80.35 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: 0.43 Total: 19.57 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: 6.06 Total: 12.89 kcal Atomic # 7 Polarization: -114.42 SS G_CDS: -4.01 Total: -118.42 kcal Atomic # 8 Polarization: -40.20 SS G_CDS: -2.54 Total: -42.74 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 1.90 Total: 48.35 kcal Total: -82.21 1.86 -80.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673258183.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.804 kcal (2) G-P(sol) polarization free energy of solvation -82.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds