Wall clock time and date at job start Tue Mar 31 2020 03:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47346 * 2 1 4 4 C 1.50703 * 109.46966 * 240.00173 * 2 1 3 5 5 H 1.08001 * 119.99776 * 240.00499 * 4 2 1 6 6 C 1.37877 * 120.00001 * 59.99531 * 4 2 1 7 7 N 1.31511 * 120.00114 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99955 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46725 * 60.00489 * 8 6 4 10 10 H 1.48505 * 109.46988 * 180.02562 * 8 6 4 11 11 H 1.48494 * 109.47116 * 300.00464 * 8 6 4 12 12 C 1.53000 * 109.47233 * 120.00458 * 2 1 3 13 13 N 1.46499 * 109.46840 * 299.99500 * 12 2 1 14 14 C 1.34779 * 119.99872 * 180.02562 * 13 12 2 15 15 O 1.21590 * 120.00297 * 0.02562 * 14 13 12 16 16 N 1.34783 * 119.99768 * 180.02562 * 14 13 12 17 17 C 1.47423 * 125.64776 * 359.69380 * 16 14 13 18 18 C 1.55132 * 104.71615 * 155.81742 * 17 16 14 19 19 H 1.09001 * 111.19608 * 279.18469 * 18 17 16 20 20 O 1.42907 * 110.93356 * 155.28909 * 18 17 16 21 21 C 1.55158 * 101.48926 * 37.29542 * 18 17 16 22 22 H 1.09001 * 110.71899 * 82.69223 * 21 18 17 23 23 C 1.52999 * 110.87050 * 205.89462 * 21 18 17 24 24 O 1.42900 * 109.46837 * 180.02562 * 23 21 18 25 25 C 1.47019 * 125.64253 * 180.02562 * 16 14 13 26 26 H 1.09000 * 109.46986 * 299.99746 * 1 2 3 27 27 H 1.08993 * 109.47662 * 59.99968 * 1 2 3 28 28 H 1.09002 * 109.47075 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47554 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47108 * 300.00289 * 3 2 1 31 31 H 1.09000 * 109.46870 * 60.00183 * 3 2 1 32 32 H 0.97000 * 120.00354 * 180.02562 * 7 6 4 33 33 H 1.09002 * 109.47398 * 59.99826 * 12 2 1 34 34 H 1.09001 * 109.47194 * 180.02562 * 12 2 1 35 35 H 0.97000 * 120.00420 * 0.02562 * 13 12 2 36 36 H 1.08995 * 110.36535 * 274.74262 * 17 16 14 37 37 H 1.08998 * 110.36694 * 37.07065 * 17 16 14 38 38 H 0.96698 * 114.00021 * 67.95686 * 20 18 17 39 39 H 1.09001 * 109.47287 * 300.06577 * 23 21 18 40 40 H 1.09003 * 109.46924 * 60.06412 * 23 21 18 41 41 H 0.96696 * 114.00046 * 180.02562 * 24 23 21 42 42 H 1.09001 * 109.88421 * 300.43530 * 25 16 14 43 43 H 1.08996 * 109.88561 * 61.60877 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6991 -0.2393 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 1.8278 -2.5198 -4.0082 10 1 1.8276 -0.4192 -5.2205 11 1 3.8073 -1.1189 -4.0078 12 6 2.0401 -0.7213 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 1.8779 -0.4910 3.6695 15 8 2.5776 -1.4790 3.7810 16 7 1.4282 0.1442 4.7700 17 6 0.5815 1.3509 4.7799 18 6 -0.1461 1.3106 6.1494 19 1 -1.0044 0.6393 6.1201 20 8 -0.5393 2.6225 6.5575 21 6 0.9668 0.7506 7.0742 22 1 1.6371 1.5472 7.3969 23 6 0.3616 0.0326 8.2821 24 8 1.4106 -0.4697 9.1124 25 6 1.7067 -0.2479 6.1593 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9562 0.8900 32 1 0.7087 1.1614 -3.4844 33 1 1.6767 -1.7490 1.2492 34 1 3.1301 -0.7209 1.2494 35 1 0.9939 0.7578 2.3565 36 1 1.1971 2.2469 4.7010 37 1 -0.1418 1.3135 3.9653 38 1 -1.2329 3.0137 6.0089 39 1 -0.2500 0.7323 8.8518 40 1 -0.2581 -0.7960 7.9393 41 1 1.0995 -0.9382 9.8990 42 1 1.3395 -1.2582 6.3401 43 1 2.7788 -0.2012 6.3499 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673509899.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:25 Heat of formation + Delta-G solvation = -154.546331 kcal Electronic energy + Delta-G solvation = -23608.954005 eV Core-core repulsion = 20074.129112 eV Total energy + Delta-G solvation = -3534.824893 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.50988 -39.72237 -38.14564 -37.49599 -36.43616 -35.05240 -33.15238 -32.11160 -29.56683 -27.72833 -27.57361 -27.21938 -25.79124 -23.89375 -21.61487 -21.12224 -20.62055 -19.36736 -18.59551 -18.13332 -17.82184 -17.28559 -16.76868 -16.64841 -16.11356 -15.71541 -15.28566 -15.11460 -14.90284 -14.67562 -14.42361 -14.02849 -14.00248 -13.75990 -13.57480 -13.20229 -13.09288 -12.72794 -12.67082 -12.62195 -12.26026 -12.16444 -12.13925 -11.77413 -11.50453 -11.49409 -11.21912 -11.04287 -10.88580 -10.72234 -10.40378 -10.18294 -9.52994 -8.02490 -6.18124 1.44833 1.45458 1.50513 1.55525 2.08488 2.45892 2.89146 3.02715 3.21246 3.28920 3.42827 3.82344 3.99806 4.16757 4.23347 4.34817 4.39969 4.50709 4.52788 4.56744 4.69173 4.75949 4.76957 4.82829 4.96309 5.04092 5.06105 5.12307 5.18708 5.23607 5.35756 5.58437 5.66462 5.67173 5.97882 6.14388 6.20787 6.43314 6.84411 6.85436 6.92612 6.96278 7.49490 7.52131 8.96504 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.034378 B = 0.003377 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.274138 B = 8288.949391 C = 8843.454262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.053 3.947 3 C -0.119 4.119 4 C -0.532 4.532 5 H 0.044 0.956 6 C 0.030 3.970 7 N -0.899 5.899 8 Si 0.945 3.055 9 H -0.277 1.277 10 H -0.282 1.282 11 H -0.278 1.278 12 C 0.166 3.834 13 N -0.721 5.721 14 C 0.712 3.288 15 O -0.639 6.639 16 N -0.637 5.637 17 C 0.064 3.936 18 C 0.117 3.883 19 H 0.099 0.901 20 O -0.562 6.562 21 C -0.088 4.088 22 H 0.091 0.909 23 C 0.091 3.909 24 O -0.594 6.594 25 C 0.138 3.862 26 H 0.035 0.965 27 H 0.064 0.936 28 H 0.018 0.982 29 H 0.016 0.984 30 H 0.065 0.935 31 H 0.034 0.966 32 H 0.261 0.739 33 H 0.037 0.963 34 H 0.034 0.966 35 H 0.404 0.596 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.404 0.596 39 H 0.071 0.929 40 H 0.061 0.939 41 H 0.400 0.600 42 H 0.064 0.936 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.754 4.467 19.970 21.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.052 3.948 3 C -0.177 4.177 4 C -0.570 4.570 5 H 0.063 0.937 6 C -0.170 4.170 7 N -0.537 5.537 8 Si 0.772 3.228 9 H -0.202 1.202 10 H -0.207 1.207 11 H -0.204 1.204 12 C 0.042 3.958 13 N -0.377 5.377 14 C 0.414 3.586 15 O -0.521 6.521 16 N -0.376 5.376 17 C -0.059 4.059 18 C 0.056 3.944 19 H 0.116 0.884 20 O -0.370 6.370 21 C -0.107 4.107 22 H 0.110 0.890 23 C 0.014 3.986 24 O -0.403 6.403 25 C 0.015 3.985 26 H 0.054 0.946 27 H 0.083 0.917 28 H 0.037 0.963 29 H 0.035 0.965 30 H 0.083 0.917 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.242 0.758 36 H 0.098 0.902 37 H 0.111 0.889 38 H 0.256 0.744 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.251 0.749 42 H 0.083 0.917 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.502 4.014 19.808 21.230 hybrid contribution -0.275 -0.435 -1.240 1.343 sum -6.777 3.579 18.567 20.087 Atomic orbital electron populations 1.21645 0.96875 0.98703 1.00345 1.18351 0.93442 0.92968 0.90001 1.21658 0.97847 0.97864 1.00307 1.21249 1.31922 1.12296 0.91580 0.93741 1.25429 0.95080 0.95574 1.00882 1.69886 1.36898 1.23195 1.23735 0.85820 0.78596 0.78856 0.79552 1.20213 1.20694 1.20373 1.21184 0.96696 0.94803 0.83132 1.45209 1.55674 1.33216 1.03596 1.15700 0.80056 0.82239 0.80612 1.90862 1.45068 1.29836 1.86310 1.47394 1.54808 1.30644 1.04757 1.23254 0.94409 0.87701 1.00559 1.22713 0.95844 0.85683 0.90114 0.88369 1.86487 1.61713 1.30002 1.58774 1.22172 0.97238 0.97286 0.94032 0.89048 1.22102 0.88889 0.97314 0.90338 1.86449 1.35807 1.77340 1.40690 1.21765 0.99898 0.98516 0.78288 0.94565 0.91716 0.96273 0.96504 0.91662 0.94691 0.92941 0.94462 0.94785 0.75844 0.90247 0.88927 0.74419 0.91055 0.92105 0.74942 0.91732 0.92962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.18 8.08 71.98 0.58 -4.60 16 2 C 0.05 2.48 0.50 -52.93 -0.03 2.45 16 3 C -0.12 -5.32 8.08 71.98 0.58 -4.74 16 4 C -0.53 -28.37 8.01 25.60 0.21 -28.16 16 5 H 0.04 2.42 7.74 -2.91 -0.02 2.40 16 6 C 0.03 1.59 5.15 84.66 0.44 2.03 16 7 N -0.90 -47.60 9.35 21.45 0.20 -47.40 16 8 Si 0.95 42.62 29.54 68.60 2.03 44.65 16 9 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 10 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 12 C 0.17 7.36 4.50 86.38 0.39 7.75 16 13 N -0.72 -26.48 4.92 -478.52 -2.35 -28.84 16 14 C 0.71 27.00 8.49 179.05 1.52 28.52 16 15 O -0.64 -30.00 16.67 -4.00 -0.07 -30.06 16 16 N -0.64 -17.98 3.32 -829.31 -2.76 -20.74 16 17 C 0.06 1.21 6.32 86.93 0.55 1.76 16 18 C 0.12 1.65 3.90 32.06 0.12 1.78 16 19 H 0.10 1.07 8.05 -2.39 -0.02 1.05 16 20 O -0.56 -6.81 13.47 -148.98 -2.01 -8.82 16 21 C -0.09 -1.58 2.96 -9.60 -0.03 -1.61 16 22 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 23 C 0.09 1.24 6.37 71.98 0.46 1.70 16 24 O -0.59 -9.40 13.50 -148.98 -2.01 -11.41 16 25 C 0.14 3.51 6.31 86.73 0.55 4.06 16 26 H 0.04 1.31 6.86 -2.39 -0.02 1.30 16 27 H 0.06 3.15 6.07 -2.39 -0.01 3.13 16 28 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 3.21 6.07 -2.38 -0.01 3.20 16 31 H 0.03 1.31 6.86 -2.39 -0.02 1.29 16 32 H 0.26 13.33 8.31 -92.71 -0.77 12.56 16 33 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.40 12.75 4.64 -92.71 -0.43 12.32 16 36 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.09 1.52 7.29 -2.39 -0.02 1.51 16 38 H 0.40 1.41 9.12 -74.06 -0.68 0.74 16 39 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.06 0.70 8.06 -2.39 -0.02 0.68 16 41 H 0.40 2.46 9.12 -74.06 -0.68 1.78 16 42 H 0.06 1.70 7.77 -2.39 -0.02 1.68 16 43 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -70.40 341.86 -2.37 -72.77 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -0.74 Total: 18.92 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: 5.34 Total: 10.93 kcal Atomic # 7 Polarization: -92.07 SS G_CDS: -4.91 Total: -96.98 kcal Atomic # 8 Polarization: -46.21 SS G_CDS: -4.08 Total: -50.29 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -70.40 -2.37 -72.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673509899.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.776 kcal (2) G-P(sol) polarization free energy of solvation -70.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds