Wall clock time and date at job start Tue Mar 31 2020 03:41:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.50699 * 109.52427 * 2 1
4 4 O 1.21278 * 120.00176 * 240.00164 * 3 2 1
5 5 N 1.34775 * 119.99538 * 60.00131 * 3 2 1
6 6 C 1.46501 * 119.99874 * 179.97438 * 5 3 2
7 7 C 1.53003 * 109.47349 * 180.02562 * 6 5 3
8 8 H 1.09000 * 109.46953 * 295.00895 * 7 6 5
9 9 C 1.52996 * 109.47332 * 175.00381 * 7 6 5
10 10 O 1.42906 * 109.46885 * 305.00176 * 9 7 6
11 11 N 1.46505 * 109.46807 * 55.00436 * 7 6 5
12 12 C 1.36931 * 119.99788 * 205.00000 * 11 7 6
13 13 H 1.08002 * 120.00438 * 0.02562 * 12 11 7
14 14 C 1.38817 * 119.99680 * 179.72358 * 12 11 7
15 15 N 1.31614 * 119.99888 * 0.27479 * 14 12 11
16 16 Si 1.86803 * 119.99862 * 180.27671 * 14 12 11
17 17 H 1.48496 * 109.47141 * 59.99751 * 16 14 12
18 18 H 1.48490 * 109.47071 * 180.02562 * 16 14 12
19 19 H 1.48501 * 109.46993 * 300.00028 * 16 14 12
20 20 C 1.53186 * 109.51735 * 239.87767 * 2 1 3
21 21 C 1.53311 * 108.96263 * 183.10921 * 20 2 1
22 22 C 1.53095 * 109.19734 * 56.94094 * 21 20 2
23 23 O 1.42896 * 109.41647 * 302.39452 * 22 21 20
24 24 C 1.42902 * 114.10272 * 61.15298 * 23 22 21
25 25 H 1.09001 * 109.47257 * 59.99657 * 1 2 3
26 26 H 1.09006 * 109.47159 * 179.97438 * 1 2 3
27 27 H 1.09004 * 109.46910 * 299.99481 * 1 2 3
28 28 H 0.97000 * 120.00108 * 0.02562 * 5 3 2
29 29 H 1.09009 * 109.46721 * 60.00549 * 6 5 3
30 30 H 1.09000 * 109.47501 * 300.00847 * 6 5 3
31 31 H 1.08998 * 109.47306 * 65.00267 * 9 7 6
32 32 H 1.08990 * 109.47060 * 185.00303 * 9 7 6
33 33 H 0.96701 * 113.99874 * 179.97438 * 10 9 7
34 34 H 0.97000 * 119.99792 * 24.99795 * 11 7 6
35 35 H 0.97005 * 119.99715 * 179.97438 * 15 14 12
36 36 H 1.08995 * 109.54478 * 302.91650 * 20 2 1
37 37 H 1.08999 * 109.54420 * 63.18785 * 20 2 1
38 38 H 1.09002 * 109.50798 * 297.02801 * 21 20 2
39 39 H 1.09003 * 109.55919 * 176.88971 * 21 20 2
40 40 H 1.09006 * 109.47974 * 182.40499 * 22 21 20
41 41 H 1.09004 * 109.47496 * 62.37729 * 22 21 20
42 42 H 1.08995 * 109.48567 * 178.85577 * 24 23 22
43 43 H 1.08998 * 109.48622 * 58.82920 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0336 1.4203 0.0000
4 8 2.7312 1.8164 -0.9096
5 7 1.7088 2.2504 1.0109
6 6 2.1988 3.6310 1.0112
7 6 1.6899 4.3526 2.2608
8 1 0.6037 4.4320 2.2174
9 6 2.3016 5.7535 2.3255
10 8 3.7260 5.6545 2.2650
11 7 2.0769 3.5951 3.4536
12 6 1.3496 3.7166 4.6075
13 1 0.4905 4.3704 4.6382
14 6 1.7129 2.9945 5.7361
15 7 2.7595 2.1973 5.6986
16 14 0.7162 3.1542 7.3079
17 1 -0.6851 2.7361 7.0501
18 1 1.3067 2.2870 8.3587
19 1 0.7351 4.5672 7.7645
20 6 2.0418 -0.7246 -1.2489
21 6 3.5728 -0.7855 -1.1972
22 6 4.0056 -1.4794 0.0971
23 8 3.4695 -0.7725 1.2172
24 6 2.0416 -0.7243 1.2479
25 1 -0.3634 0.5139 -0.8900
26 1 -0.3634 -1.0277 -0.0005
27 1 -0.3633 0.5138 0.8901
28 1 1.1511 1.9335 1.7385
29 1 1.8362 4.1455 0.1212
30 1 3.2888 3.6298 1.0114
31 1 1.9425 6.3460 1.4841
32 1 2.0102 6.2343 3.2592
33 1 4.1813 6.5068 2.3008
34 1 2.8482 3.0076 3.4260
35 1 3.0135 1.6930 6.4873
36 1 1.6375 -1.7365 -1.2747
37 1 1.7269 -0.1818 -2.1401
38 1 3.9784 0.2260 -1.2213
39 1 3.9448 -1.3476 -2.0538
40 1 5.0939 -1.4872 0.1589
41 1 3.6337 -2.5040 0.1019
42 1 1.7150 -0.1882 2.1390
43 1 1.6439 -1.7389 1.2680
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001676592292.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:41:40
Heat of formation + Delta-G solvation = -129.574202 kcal
Electronic energy + Delta-G solvation = -24504.276692 eV
Core-core repulsion = 20970.534672 eV
Total energy + Delta-G solvation = -3533.742020 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 286.173 amu
Computer time = 1.15 seconds
Orbital eigenvalues (eV)
-40.51028 -38.07661 -36.97574 -34.87533 -34.30078 -33.51846 -32.05982 -31.04917
-28.26462 -26.91573 -25.49861 -24.87938 -23.64638 -22.72900 -21.27775 -20.03923
-18.95929 -17.51715 -16.73515 -16.55400 -16.09286 -15.61811 -15.44181 -15.01283
-14.70860 -14.26422 -14.07842 -14.02874 -13.51203 -13.35502 -12.99444 -12.82736
-12.54958 -12.49058 -12.14824 -11.98730 -11.87815 -11.79725 -11.36179 -10.92823
-10.82354 -10.81870 -10.57494 -10.47899 -10.32959 -10.10124 -9.75279 -9.47349
-9.33641 -9.05814 -8.93790 -8.44141 -7.00025 -5.77058 -3.08014 3.05607
3.40341 3.45523 3.47254 3.65221 4.10360 4.54875 4.59511 4.79242
4.85957 4.96286 5.08214 5.20477 5.28213 5.44988 5.48576 5.50227
5.56763 5.60997 5.62716 5.67212 5.80305 5.86256 5.90687 5.95263
5.99121 6.06603 6.10107 6.12008 6.24427 6.40643 6.54700 6.57264
6.80728 7.03644 7.37082 7.64376 8.06516 8.24136 8.39074 8.71707
9.51251 10.07364 10.44299 11.43760
Molecular weight = 286.17amu
Principal moments of inertia in cm(-1)
A = 0.015338 B = 0.005565 C = 0.004727
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1825.146901 B = 5030.490643 C = 5921.936230
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.118 4.118
3 C 0.531 3.469
4 O -0.551 6.551
5 N -0.709 5.709
6 C 0.120 3.880
7 C 0.166 3.834
8 H 0.064 0.936
9 C 0.060 3.940
10 O -0.559 6.559
11 N -0.712 5.712
12 C -0.250 4.250
13 H 0.068 0.932
14 C -0.006 4.006
15 N -0.922 5.922
16 Si 0.905 3.095
17 H -0.286 1.286
18 H -0.291 1.291
19 H -0.287 1.287
20 C -0.092 4.092
21 C -0.166 4.166
22 C 0.058 3.942
23 O -0.368 6.368
24 C 0.074 3.926
25 H 0.062 0.938
26 H 0.066 0.934
27 H 0.067 0.933
28 H 0.407 0.593
29 H 0.058 0.942
30 H 0.075 0.925
31 H 0.025 0.975
32 H 0.048 0.952
33 H 0.363 0.637
34 H 0.390 0.610
35 H 0.256 0.744
36 H 0.064 0.936
37 H 0.072 0.928
38 H 0.097 0.903
39 H 0.066 0.934
40 H 0.090 0.910
41 H 0.044 0.956
42 H 0.105 0.895
43 H 0.057 0.943
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.569 -4.156 -12.538 13.682
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.122 4.122
3 C 0.317 3.683
4 O -0.430 6.430
5 N -0.360 5.360
6 C -0.004 4.004
7 C 0.054 3.946
8 H 0.082 0.918
9 C -0.022 4.022
10 O -0.362 6.362
11 N -0.354 5.354
12 C -0.381 4.381
13 H 0.086 0.914
14 C -0.204 4.204
15 N -0.569 5.569
16 Si 0.735 3.265
17 H -0.213 1.213
18 H -0.217 1.217
19 H -0.214 1.214
20 C -0.130 4.130
21 C -0.204 4.204
22 C -0.019 4.019
23 O -0.286 6.286
24 C -0.004 4.004
25 H 0.082 0.918
26 H 0.085 0.915
27 H 0.086 0.914
28 H 0.243 0.757
29 H 0.076 0.924
30 H 0.093 0.907
31 H 0.043 0.957
32 H 0.066 0.934
33 H 0.208 0.792
34 H 0.225 0.775
35 H 0.066 0.934
36 H 0.083 0.917
37 H 0.090 0.910
38 H 0.116 0.884
39 H 0.085 0.915
40 H 0.109 0.891
41 H 0.062 0.938
42 H 0.123 0.877
43 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges -3.216 -4.409 -12.906 14.012
hybrid contribution -0.612 0.374 1.189 1.388
sum -3.828 -4.035 -11.717 12.970
Atomic orbital electron populations
1.21779 0.92064 1.02834 1.03002 1.21516 0.97529 0.94167 0.98969
1.20059 0.79853 0.86555 0.81863 1.90576 1.38420 1.77152 1.36820
1.45932 1.52909 1.12430 1.24679 1.21510 1.00408 0.81063 0.97466
1.20582 0.96717 0.89776 0.87494 0.91842 1.23032 0.81222 0.99648
0.98277 1.86586 1.18891 1.33574 1.97189 1.42370 1.34867 1.51319
1.06832 1.19149 1.07828 1.21862 0.89295 0.91363 1.24746 0.98097
0.99543 0.97969 1.69680 1.27040 1.30852 1.29283 0.86330 0.79296
0.77264 0.83562 1.21314 1.21726 1.21402 1.21412 0.95946 0.99192
0.96429 1.22407 0.96210 1.04113 0.97635 1.22611 0.99088 0.94069
0.86131 1.88089 1.19496 1.76135 1.44852 1.22660 0.81768 0.99384
0.96573 0.91845 0.91477 0.91432 0.75693 0.92413 0.90676 0.95653
0.93388 0.79241 0.77506 0.93374 0.91734 0.90972 0.88448 0.91491
0.89147 0.93751 0.87707 0.92480
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.53 8.38 37.16 0.31 -1.22 16
2 C -0.12 -1.63 0.63 -155.52 -0.10 -1.73 16
3 C 0.53 9.21 5.91 -10.99 -0.06 9.14 16
4 O -0.55 -10.98 13.84 5.56 0.08 -10.91 16
5 N -0.71 -12.48 5.16 -60.29 -0.31 -12.79 16
6 C 0.12 2.21 5.12 -4.04 -0.02 2.19 16
7 C 0.17 3.19 2.84 -67.93 -0.19 3.00 16
8 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16
9 C 0.06 1.05 6.86 37.16 0.25 1.31 16
10 O -0.56 -10.28 12.64 -35.23 -0.45 -10.72 16
11 N -0.71 -17.09 4.51 -53.42 -0.24 -17.33 16
12 C -0.25 -6.57 9.93 -15.06 -0.15 -6.72 16
13 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16
14 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16
15 N -0.92 -27.22 13.06 55.49 0.72 -26.50 16
16 Si 0.90 21.66 29.55 -169.99 -5.02 16.64 16
17 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16
18 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16
19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16
20 C -0.09 -1.15 4.47 -26.47 -0.12 -1.27 16
21 C -0.17 -2.22 5.82 -26.52 -0.15 -2.38 16
22 C 0.06 0.78 6.84 37.21 0.25 1.04 16
23 O -0.37 -6.33 10.45 -35.23 -0.37 -6.69 16
24 C 0.07 1.08 5.46 37.20 0.20 1.28 16
25 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16
26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16
27 H 0.07 0.75 7.57 -51.93 -0.39 0.36 16
28 H 0.41 7.16 6.96 -40.82 -0.28 6.88 16
29 H 0.06 0.99 8.14 -51.92 -0.42 0.56 16
30 H 0.07 1.59 7.39 -51.93 -0.38 1.20 16
31 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16
32 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16
33 H 0.36 4.84 9.12 45.56 0.42 5.25 16
34 H 0.39 10.53 7.80 -40.82 -0.32 10.21 16
35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16
36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16
37 H 0.07 0.93 8.02 -51.93 -0.42 0.51 16
38 H 0.10 1.63 5.82 -51.93 -0.30 1.33 16
39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16
40 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16
41 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16
42 H 0.10 1.68 7.51 -51.93 -0.39 1.29 16
43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
LS Contribution 344.12 15.07 5.19 5.19
Total: -1.00 -32.44 344.12 -6.54 -38.98
By element:
Atomic # 1 Polarization: 26.03 SS G_CDS: -6.27 Total: 19.77 kcal
Atomic # 6 Polarization: 4.24 SS G_CDS: 0.13 Total: 4.37 kcal
Atomic # 7 Polarization: -56.79 SS G_CDS: 0.17 Total: -56.62 kcal
Atomic # 8 Polarization: -27.59 SS G_CDS: -0.74 Total: -28.33 kcal
Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal
Total LS contribution 5.19 Total: 5.19 kcal
Total: -32.44 -6.54 -38.98 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001676592292.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -90.592 kcal
(2) G-P(sol) polarization free energy of solvation -32.444 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.036 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.538 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.982 kcal
(6) G-S(sol) free energy of system = (1) + (5) -129.574 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.15 seconds