Wall clock time and date at job start Tue Mar 31 2020 03:41:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.50699 * 109.52427 * 2 1
4 4 O 1.21278 * 120.00176 * 240.00164 * 3 2 1
5 5 N 1.34775 * 119.99538 * 60.00131 * 3 2 1
6 6 C 1.46501 * 119.99874 * 179.97438 * 5 3 2
7 7 C 1.53003 * 109.47349 * 180.02562 * 6 5 3
8 8 H 1.09000 * 109.46953 * 295.00895 * 7 6 5
9 9 C 1.52996 * 109.47332 * 175.00381 * 7 6 5
10 10 O 1.42906 * 109.46885 * 305.00176 * 9 7 6
11 11 N 1.46505 * 109.46807 * 55.00436 * 7 6 5
12 12 C 1.36931 * 119.99788 * 205.00000 * 11 7 6
13 13 H 1.08002 * 120.00438 * 0.02562 * 12 11 7
14 14 C 1.38817 * 119.99680 * 179.72358 * 12 11 7
15 15 N 1.31614 * 119.99888 * 0.27479 * 14 12 11
16 16 Si 1.86803 * 119.99862 * 180.27671 * 14 12 11
17 17 H 1.48496 * 109.47141 * 59.99751 * 16 14 12
18 18 H 1.48490 * 109.47071 * 180.02562 * 16 14 12
19 19 H 1.48501 * 109.46993 * 300.00028 * 16 14 12
20 20 C 1.53186 * 109.51735 * 239.87767 * 2 1 3
21 21 C 1.53311 * 108.96263 * 183.10921 * 20 2 1
22 22 C 1.53095 * 109.19734 * 56.94094 * 21 20 2
23 23 O 1.42896 * 109.41647 * 302.39452 * 22 21 20
24 24 C 1.42902 * 114.10272 * 61.15298 * 23 22 21
25 25 H 1.09001 * 109.47257 * 59.99657 * 1 2 3
26 26 H 1.09006 * 109.47159 * 179.97438 * 1 2 3
27 27 H 1.09004 * 109.46910 * 299.99481 * 1 2 3
28 28 H 0.97000 * 120.00108 * 0.02562 * 5 3 2
29 29 H 1.09009 * 109.46721 * 60.00549 * 6 5 3
30 30 H 1.09000 * 109.47501 * 300.00847 * 6 5 3
31 31 H 1.08998 * 109.47306 * 65.00267 * 9 7 6
32 32 H 1.08990 * 109.47060 * 185.00303 * 9 7 6
33 33 H 0.96701 * 113.99874 * 179.97438 * 10 9 7
34 34 H 0.97000 * 119.99792 * 24.99795 * 11 7 6
35 35 H 0.97005 * 119.99715 * 179.97438 * 15 14 12
36 36 H 1.08995 * 109.54478 * 302.91650 * 20 2 1
37 37 H 1.08999 * 109.54420 * 63.18785 * 20 2 1
38 38 H 1.09002 * 109.50798 * 297.02801 * 21 20 2
39 39 H 1.09003 * 109.55919 * 176.88971 * 21 20 2
40 40 H 1.09006 * 109.47974 * 182.40499 * 22 21 20
41 41 H 1.09004 * 109.47496 * 62.37729 * 22 21 20
42 42 H 1.08995 * 109.48567 * 178.85577 * 24 23 22
43 43 H 1.08998 * 109.48622 * 58.82920 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0336 1.4203 0.0000
4 8 2.7312 1.8164 -0.9096
5 7 1.7088 2.2504 1.0109
6 6 2.1988 3.6310 1.0112
7 6 1.6899 4.3526 2.2608
8 1 0.6037 4.4320 2.2174
9 6 2.3016 5.7535 2.3255
10 8 3.7260 5.6545 2.2650
11 7 2.0769 3.5951 3.4536
12 6 1.3496 3.7166 4.6075
13 1 0.4905 4.3704 4.6382
14 6 1.7129 2.9945 5.7361
15 7 2.7595 2.1973 5.6986
16 14 0.7162 3.1542 7.3079
17 1 -0.6851 2.7361 7.0501
18 1 1.3067 2.2870 8.3587
19 1 0.7351 4.5672 7.7645
20 6 2.0418 -0.7246 -1.2489
21 6 3.5728 -0.7855 -1.1972
22 6 4.0056 -1.4794 0.0971
23 8 3.4695 -0.7725 1.2172
24 6 2.0416 -0.7243 1.2479
25 1 -0.3634 0.5139 -0.8900
26 1 -0.3634 -1.0277 -0.0005
27 1 -0.3633 0.5138 0.8901
28 1 1.1511 1.9335 1.7385
29 1 1.8362 4.1455 0.1212
30 1 3.2888 3.6298 1.0114
31 1 1.9425 6.3460 1.4841
32 1 2.0102 6.2343 3.2592
33 1 4.1813 6.5068 2.3008
34 1 2.8482 3.0076 3.4260
35 1 3.0135 1.6930 6.4873
36 1 1.6375 -1.7365 -1.2747
37 1 1.7269 -0.1818 -2.1401
38 1 3.9784 0.2260 -1.2213
39 1 3.9448 -1.3476 -2.0538
40 1 5.0939 -1.4872 0.1589
41 1 3.6337 -2.5040 0.1019
42 1 1.7150 -0.1882 2.1390
43 1 1.6439 -1.7389 1.2680
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001676592292.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:41:39
Heat of formation + Delta-G solvation = -156.281570 kcal
Electronic energy + Delta-G solvation = -24505.434810 eV
Core-core repulsion = 20970.534672 eV
Total energy + Delta-G solvation = -3534.900139 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 286.173 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-41.74157 -39.41727 -38.46496 -36.40412 -35.46495 -35.20655 -33.43747 -32.59562
-30.03212 -27.88177 -26.87918 -26.00487 -25.60846 -23.92587 -22.42677 -21.60819
-20.29167 -19.32939 -18.16548 -17.97569 -17.39095 -16.94918 -16.71488 -16.41798
-16.19115 -15.74574 -15.39416 -15.32970 -15.02019 -14.87474 -14.52151 -14.31382
-13.78753 -13.56321 -13.40049 -13.15266 -12.98987 -12.97479 -12.85942 -12.71244
-12.61266 -12.27853 -11.96126 -11.89700 -11.70468 -11.53048 -11.44043 -10.97677
-10.73251 -10.63513 -10.30891 -9.90351 -8.98271 -7.86079 -5.16377 1.51014
1.53027 1.59260 1.70986 2.33190 2.59794 3.00402 3.44558 3.54660
3.61313 3.67148 3.84038 3.91333 3.99737 4.05628 4.15483 4.27421
4.45089 4.47940 4.52130 4.56069 4.60261 4.71163 4.72527 4.76295
4.86502 4.88021 4.95985 5.00063 5.03697 5.19223 5.23708 5.25542
5.44721 5.55482 5.62664 6.28439 6.30783 6.66226 7.05965 7.33362
7.38994 8.11337 8.37574 9.35883
Molecular weight = 286.17amu
Principal moments of inertia in cm(-1)
A = 0.015338 B = 0.005565 C = 0.004727
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1825.146901 B = 5030.490643 C = 5921.936230
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C -0.112 4.112
3 C 0.523 3.477
4 O -0.581 6.581
5 N -0.710 5.710
6 C 0.132 3.868
7 C 0.161 3.839
8 H 0.080 0.920
9 C 0.064 3.936
10 O -0.585 6.585
11 N -0.721 5.721
12 C -0.239 4.239
13 H 0.081 0.919
14 C -0.070 4.070
15 N -0.964 5.964
16 Si 0.969 3.031
17 H -0.274 1.274
18 H -0.303 1.303
19 H -0.283 1.283
20 C -0.090 4.090
21 C -0.164 4.164
22 C 0.053 3.947
23 O -0.409 6.409
24 C 0.072 3.928
25 H 0.067 0.933
26 H 0.096 0.904
27 H 0.062 0.938
28 H 0.407 0.593
29 H 0.075 0.925
30 H 0.042 0.958
31 H 0.065 0.935
32 H 0.037 0.963
33 H 0.385 0.615
34 H 0.372 0.628
35 H 0.248 0.752
36 H 0.099 0.901
37 H 0.068 0.932
38 H 0.056 0.944
39 H 0.092 0.908
40 H 0.090 0.910
41 H 0.074 0.926
42 H 0.081 0.919
43 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.529 -4.620 -13.506 15.307
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.192 4.192
2 C -0.116 4.116
3 C 0.310 3.690
4 O -0.462 6.462
5 N -0.360 5.360
6 C 0.007 3.993
7 C 0.052 3.948
8 H 0.098 0.902
9 C -0.016 4.016
10 O -0.391 6.391
11 N -0.361 5.361
12 C -0.371 4.371
13 H 0.099 0.901
14 C -0.263 4.263
15 N -0.614 5.614
16 Si 0.799 3.201
17 H -0.199 1.199
18 H -0.230 1.230
19 H -0.210 1.210
20 C -0.128 4.128
21 C -0.202 4.202
22 C -0.023 4.023
23 O -0.328 6.328
24 C -0.005 4.005
25 H 0.086 0.914
26 H 0.114 0.886
27 H 0.081 0.919
28 H 0.243 0.757
29 H 0.093 0.907
30 H 0.061 0.939
31 H 0.083 0.917
32 H 0.055 0.945
33 H 0.232 0.768
34 H 0.203 0.797
35 H 0.056 0.944
36 H 0.117 0.883
37 H 0.087 0.913
38 H 0.075 0.925
39 H 0.111 0.889
40 H 0.109 0.891
41 H 0.092 0.908
42 H 0.099 0.901
43 H 0.107 0.893
Dipole moment (debyes) X Y Z Total
from point charges -5.213 -4.818 -13.909 15.616
hybrid contribution 0.051 0.587 1.389 1.508
sum -5.162 -4.232 -12.520 14.189
Atomic orbital electron populations
1.21796 0.89650 1.04780 1.03005 1.21556 0.99350 0.91331 0.99336
1.20837 0.79111 0.87992 0.81011 1.90563 1.39638 1.78073 1.37914
1.45965 1.52862 1.12320 1.24880 1.21309 0.98400 0.81878 0.97716
1.20842 0.97704 0.90335 0.85917 0.90232 1.22888 0.80997 0.98400
0.99360 1.86542 1.19506 1.35820 1.97252 1.42464 1.34017 1.51782
1.07823 1.19564 1.07452 1.20344 0.89724 0.90095 1.25496 0.99461
1.00152 1.01147 1.69864 1.29303 1.32661 1.29542 0.85290 0.78299
0.76903 0.79641 1.19948 1.22974 1.20964 1.21469 0.95169 1.00773
0.95340 1.22346 0.97066 1.02117 0.98637 1.22801 0.99276 0.95159
0.85062 1.88029 1.21017 1.77152 1.46608 1.22722 0.80907 1.00906
0.95961 0.91377 0.88564 0.91919 0.75713 0.90719 0.93922 0.91709
0.94473 0.76753 0.79683 0.94355 0.88284 0.91348 0.92501 0.88938
0.89146 0.90765 0.90085 0.89253
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.64 8.38 71.98 0.60 -2.04 16
2 C -0.11 -2.95 0.63 -52.84 -0.03 -2.98 16
3 C 0.52 18.26 5.91 87.66 0.52 18.78 16
4 O -0.58 -23.65 13.84 -3.02 -0.04 -23.69 16
5 N -0.71 -25.32 5.16 -463.05 -2.39 -27.71 16
6 C 0.13 4.88 5.12 86.38 0.44 5.32 16
7 C 0.16 6.11 2.84 44.99 0.13 6.24 16
8 H 0.08 2.77 8.08 -2.39 -0.02 2.75 16
9 C 0.06 2.18 6.86 71.98 0.49 2.67 16
10 O -0.58 -21.23 12.64 -148.98 -1.88 -23.11 16
11 N -0.72 -34.93 4.51 -322.93 -1.46 -36.39 16
12 C -0.24 -12.50 9.93 84.04 0.83 -11.66 16
13 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16
14 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16
15 N -0.96 -58.49 13.06 21.65 0.28 -58.21 16
16 Si 0.97 44.75 29.55 68.60 2.03 46.78 16
17 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16
18 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16
19 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16
20 C -0.09 -2.05 4.47 30.76 0.14 -1.91 16
21 C -0.16 -4.21 5.82 30.73 0.18 -4.04 16
22 C 0.05 1.38 6.84 72.01 0.49 1.87 16
23 O -0.41 -14.16 10.45 -148.98 -1.56 -15.72 16
24 C 0.07 2.05 5.46 72.01 0.39 2.45 16
25 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16
26 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16
27 H 0.06 1.29 7.57 -2.38 -0.02 1.27 16
28 H 0.41 14.53 6.96 -92.71 -0.65 13.89 16
29 H 0.07 2.50 8.14 -2.38 -0.02 2.48 16
30 H 0.04 1.86 7.39 -2.39 -0.02 1.84 16
31 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16
32 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16
33 H 0.38 9.87 9.12 -74.06 -0.68 9.20 16
34 H 0.37 20.73 7.80 -92.71 -0.72 20.01 16
35 H 0.25 14.80 8.31 -92.70 -0.77 14.03 16
36 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16
37 H 0.07 1.62 8.02 -2.39 -0.02 1.60 16
38 H 0.06 1.95 5.82 -2.39 -0.01 1.93 16
39 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16
40 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16
41 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16
42 H 0.08 2.66 7.51 -2.39 -0.02 2.64 16
43 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16
Total: -1.00 -72.16 344.12 -1.38 -73.54
By element:
Atomic # 1 Polarization: 54.22 SS G_CDS: -1.02 Total: 53.20 kcal
Atomic # 6 Polarization: 6.64 SS G_CDS: 4.65 Total: 11.30 kcal
Atomic # 7 Polarization: -118.74 SS G_CDS: -3.56 Total: -122.30 kcal
Atomic # 8 Polarization: -59.04 SS G_CDS: -3.48 Total: -62.52 kcal
Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal
Total: -72.16 -1.38 -73.54 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001676592292.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -82.740 kcal
(2) G-P(sol) polarization free energy of solvation -72.162 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.902 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.380 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.542 kcal
(6) G-S(sol) free energy of system = (1) + (5) -156.282 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds