Wall clock time and date at job start Tue Mar 31 2020 03:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00241 * 2 1 4 4 H 1.48502 * 109.47326 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47536 * 299.99838 * 3 2 1 6 6 H 1.48509 * 109.47141 * 59.99894 * 3 2 1 7 7 C 1.38814 * 119.99665 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99704 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00249 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99946 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46995 * 180.02562 * 10 9 7 12 12 H 1.08993 * 109.46955 * 60.00138 * 11 10 9 13 13 O 1.42906 * 109.46752 * 299.99720 * 11 10 9 14 14 C 1.52997 * 109.47127 * 180.02562 * 11 10 9 15 15 N 1.46503 * 109.47269 * 184.99793 * 14 11 10 16 16 C 1.34771 * 120.00040 * 179.97438 * 15 14 11 17 17 O 1.21280 * 120.00244 * 359.97438 * 16 15 14 18 18 C 1.50701 * 119.99782 * 180.02562 * 16 15 14 19 19 C 1.52997 * 109.47011 * 179.97438 * 18 16 15 20 20 H 1.09000 * 109.48512 * 54.99570 * 19 18 16 21 21 C 1.53097 * 109.48192 * 175.02087 * 19 18 16 22 22 C 1.53176 * 109.16557 * 177.58747 * 21 19 18 23 23 C 1.53181 * 109.03989 * 303.02459 * 22 21 19 24 24 C 1.53094 * 109.16326 * 56.97369 * 23 22 21 25 25 O 1.42901 * 109.42796 * 302.40153 * 24 23 22 26 26 H 0.97001 * 119.99952 * 0.02562 * 1 2 3 27 27 H 0.96998 * 119.99862 * 0.02562 * 9 7 2 28 28 H 1.09001 * 109.47464 * 60.00449 * 10 9 7 29 29 H 1.09001 * 109.47459 * 300.00165 * 10 9 7 30 30 H 0.96696 * 113.99911 * 300.00276 * 13 11 10 31 31 H 1.09002 * 109.47196 * 304.99671 * 14 11 10 32 32 H 1.09001 * 109.47630 * 64.99767 * 14 11 10 33 33 H 0.97002 * 119.99507 * 359.97438 * 15 14 11 34 34 H 1.09001 * 109.46900 * 299.99312 * 18 16 15 35 35 H 1.08993 * 109.47208 * 59.99748 * 18 16 15 36 36 H 1.08993 * 109.51988 * 297.49594 * 21 19 18 37 37 H 1.09001 * 109.52233 * 57.62404 * 21 19 18 38 38 H 1.09003 * 109.54014 * 62.88557 * 22 21 19 39 39 H 1.08992 * 109.54792 * 183.06181 * 22 21 19 40 40 H 1.08994 * 109.52452 * 176.88396 * 23 22 21 41 41 H 1.08999 * 109.51651 * 297.01070 * 23 22 21 42 42 H 1.09002 * 109.47562 * 62.37848 * 24 23 22 43 43 H 1.08993 * 109.47748 * 182.39828 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0636 -4.8197 -0.0001 12 1 0.4374 -4.7618 -0.8903 13 8 0.2417 -4.7442 1.1665 14 6 1.8286 -6.1448 0.0005 15 7 0.8812 -7.2557 -0.1204 16 6 1.3313 -8.5258 -0.1420 17 8 2.5206 -8.7492 -0.0617 18 6 0.3567 -9.6685 -0.2670 19 6 1.1218 -10.9935 -0.2675 20 1 1.7482 -11.0520 0.6226 21 6 0.1272 -12.1574 -0.2692 22 6 0.8995 -13.4787 -0.3306 23 6 1.7946 -13.4771 -1.5737 24 6 2.7247 -12.2622 -1.5216 25 8 1.9435 -11.0689 -1.4342 26 1 -0.4850 0.8401 -0.0004 27 1 0.3555 -2.3881 -0.0002 28 1 2.6846 -3.7146 0.8906 29 1 2.6847 -3.7146 -0.8894 30 1 0.7335 -4.7897 1.9977 31 1 2.5213 -6.1648 -0.8408 32 1 2.3858 -6.2423 0.9323 33 1 -0.0700 -7.0770 -0.1850 34 1 -0.3360 -9.6489 0.5744 35 1 -0.2003 -9.5707 -1.1987 36 1 -0.4707 -12.1269 0.6416 37 1 -0.5270 -12.0762 -1.1373 38 1 1.5159 -13.5826 0.5624 39 1 0.1965 -14.3097 -0.3870 40 1 2.3890 -14.3904 -1.5957 41 1 1.1747 -13.4242 -2.4687 42 1 3.3722 -12.3375 -0.6479 43 1 3.3346 -12.2325 -2.4245 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753909222.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:12 Heat of formation + Delta-G solvation = -140.767417 kcal Electronic energy + Delta-G solvation = -22488.706668 eV Core-core repulsion = 18954.479274 eV Total energy + Delta-G solvation = -3534.227394 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.17474 -39.06047 -37.53979 -34.32993 -33.96326 -33.85418 -33.11449 -31.29413 -29.56001 -28.19406 -25.44994 -24.54155 -23.10152 -22.25758 -21.39442 -20.55644 -20.16851 -17.32969 -17.07792 -16.77040 -16.58193 -15.99266 -15.89600 -15.23788 -14.86720 -14.77418 -14.55393 -14.45914 -13.94312 -13.66765 -13.16808 -13.05989 -12.89527 -12.85201 -12.51911 -12.39588 -12.06867 -11.76859 -11.55635 -11.40384 -11.08727 -10.95481 -10.83501 -10.61406 -10.58673 -10.13892 -9.94787 -9.79111 -9.62783 -9.42742 -9.02329 -8.90273 -6.93524 -5.76129 -3.05683 2.69473 3.14977 3.43564 3.49148 3.51486 3.55187 4.35765 4.42682 4.49697 4.55222 4.59655 4.73752 4.78709 4.88757 4.91068 5.02750 5.12059 5.19101 5.28622 5.34774 5.36800 5.45658 5.55242 5.56226 5.58736 5.64110 5.68703 5.76606 5.86502 5.94607 5.98166 6.21134 6.46401 6.52679 6.69039 7.06958 7.53775 7.69277 7.95604 8.27977 8.42179 9.53865 10.10673 10.46660 11.46304 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.054434 B = 0.002304 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.262284 B =12147.442890 C =12445.091535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.014 4.014 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.126 3.874 11 C 0.089 3.911 12 H 0.104 0.896 13 O -0.553 6.553 14 C 0.091 3.909 15 N -0.725 5.725 16 C 0.512 3.488 17 O -0.534 6.534 18 C -0.136 4.136 19 C 0.107 3.893 20 H 0.065 0.935 21 C -0.152 4.152 22 C -0.122 4.122 23 C -0.158 4.158 24 C 0.063 3.937 25 O -0.367 6.367 26 H 0.255 0.745 27 H 0.389 0.611 28 H 0.023 0.977 29 H 0.029 0.971 30 H 0.373 0.627 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.404 0.596 34 H 0.107 0.893 35 H 0.101 0.899 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.049 0.951 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.565 -28.114 -0.350 28.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.371 5.371 10 C -0.003 4.003 11 C 0.029 3.971 12 H 0.122 0.878 13 O -0.357 6.357 14 C -0.034 4.034 15 N -0.377 5.377 16 C 0.298 3.702 17 O -0.410 6.410 18 C -0.176 4.176 19 C 0.049 3.951 20 H 0.083 0.917 21 C -0.190 4.190 22 C -0.160 4.160 23 C -0.196 4.196 24 C -0.014 4.014 25 O -0.285 6.285 26 H 0.065 0.935 27 H 0.223 0.777 28 H 0.040 0.960 29 H 0.046 0.954 30 H 0.220 0.780 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.238 0.762 34 H 0.125 0.875 35 H 0.120 0.880 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.068 0.932 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.024 -27.952 -0.878 27.966 hybrid contribution 0.157 0.782 0.497 0.940 sum 0.133 -27.170 -0.380 27.173 Atomic orbital electron populations 1.69690 1.05102 1.25548 1.57480 1.24770 0.95551 0.97750 1.02912 0.86102 0.78764 0.84026 0.77193 1.20547 1.21831 1.21837 1.19272 0.91036 0.84099 1.42950 0.91155 1.42241 1.06131 0.99386 1.89331 1.21200 0.93549 0.86633 0.98871 1.22385 0.93233 0.91844 0.89594 0.87836 1.86569 1.37022 1.96438 1.15711 1.22070 0.92422 0.86034 1.02833 1.45954 1.11089 1.05586 1.75119 1.20483 0.89682 0.83793 0.76261 1.90711 1.16913 1.84560 1.48826 1.21740 0.98304 0.92381 1.05176 1.21745 0.91246 0.92551 0.89601 0.91693 1.22243 0.98636 0.95014 1.03092 1.21569 0.98781 0.97382 0.98218 1.22222 0.99258 0.99130 0.98948 1.22504 0.92699 0.84142 1.02017 1.87989 1.58302 1.39656 1.42578 0.93535 0.77653 0.95950 0.95372 0.77978 0.90563 0.91242 0.76178 0.87503 0.88028 0.90734 0.90863 0.91787 0.91464 0.91032 0.91102 0.93243 0.89035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.49 13.06 55.49 0.72 -27.76 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.59 29.55 -169.99 -5.02 17.56 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 7 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 8 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 9 N -0.73 -18.51 5.49 -59.91 -0.33 -18.84 16 10 C 0.13 2.47 5.92 -4.04 -0.02 2.45 16 11 C 0.09 1.38 3.09 -26.73 -0.08 1.30 16 12 H 0.10 1.65 8.14 -51.93 -0.42 1.22 16 13 O -0.55 -8.77 13.03 -35.23 -0.46 -9.23 16 14 C 0.09 1.23 5.31 -4.04 -0.02 1.21 16 15 N -0.73 -8.54 5.50 -60.29 -0.33 -8.87 16 16 C 0.51 6.50 7.71 -10.99 -0.08 6.41 16 17 O -0.53 -8.93 15.42 -8.84 -0.14 -9.07 16 18 C -0.14 -1.20 5.41 -27.88 -0.15 -1.35 16 19 C 0.11 1.02 2.19 -26.68 -0.06 0.97 16 20 H 0.07 0.69 7.96 -51.93 -0.41 0.28 16 21 C -0.15 -1.04 5.42 -26.59 -0.14 -1.19 16 22 C -0.12 -0.78 6.03 -26.55 -0.16 -0.94 16 23 C -0.16 -1.07 6.14 -26.59 -0.16 -1.24 16 24 C 0.06 0.57 6.84 37.21 0.25 0.82 16 25 O -0.37 -4.35 9.64 -49.63 -0.48 -4.83 16 26 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 27 H 0.39 10.60 7.54 -40.82 -0.31 10.29 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.37 4.98 9.04 45.56 0.41 5.39 16 31 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.40 4.01 8.47 -40.82 -0.35 3.66 16 34 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 353.85 15.07 5.33 5.33 Total: -1.00 -34.88 353.85 -8.12 -43.01 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -6.54 Total: 11.75 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -0.88 Total: 0.94 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: 0.06 Total: -55.47 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -1.07 Total: -23.13 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.88 -8.12 -43.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753909222.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.759 kcal (2) G-P(sol) polarization free energy of solvation -34.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds