Wall clock time and date at job start Tue Mar 31 2020 03:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00241 * 2 1 4 4 H 1.48502 * 109.47326 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47536 * 299.99838 * 3 2 1 6 6 H 1.48509 * 109.47141 * 59.99894 * 3 2 1 7 7 C 1.38814 * 119.99665 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99704 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00249 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99946 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46995 * 180.02562 * 10 9 7 12 12 H 1.08993 * 109.46955 * 60.00138 * 11 10 9 13 13 O 1.42906 * 109.46752 * 299.99720 * 11 10 9 14 14 C 1.52997 * 109.47127 * 180.02562 * 11 10 9 15 15 N 1.46503 * 109.47269 * 184.99793 * 14 11 10 16 16 C 1.34771 * 120.00040 * 179.97438 * 15 14 11 17 17 O 1.21280 * 120.00244 * 359.97438 * 16 15 14 18 18 C 1.50701 * 119.99782 * 180.02562 * 16 15 14 19 19 C 1.52997 * 109.47011 * 179.97438 * 18 16 15 20 20 H 1.09000 * 109.48512 * 54.99570 * 19 18 16 21 21 C 1.53097 * 109.48192 * 175.02087 * 19 18 16 22 22 C 1.53176 * 109.16557 * 177.58747 * 21 19 18 23 23 C 1.53181 * 109.03989 * 303.02459 * 22 21 19 24 24 C 1.53094 * 109.16326 * 56.97369 * 23 22 21 25 25 O 1.42901 * 109.42796 * 302.40153 * 24 23 22 26 26 H 0.97001 * 119.99952 * 0.02562 * 1 2 3 27 27 H 0.96998 * 119.99862 * 0.02562 * 9 7 2 28 28 H 1.09001 * 109.47464 * 60.00449 * 10 9 7 29 29 H 1.09001 * 109.47459 * 300.00165 * 10 9 7 30 30 H 0.96696 * 113.99911 * 300.00276 * 13 11 10 31 31 H 1.09002 * 109.47196 * 304.99671 * 14 11 10 32 32 H 1.09001 * 109.47630 * 64.99767 * 14 11 10 33 33 H 0.97002 * 119.99507 * 359.97438 * 15 14 11 34 34 H 1.09001 * 109.46900 * 299.99312 * 18 16 15 35 35 H 1.08993 * 109.47208 * 59.99748 * 18 16 15 36 36 H 1.08993 * 109.51988 * 297.49594 * 21 19 18 37 37 H 1.09001 * 109.52233 * 57.62404 * 21 19 18 38 38 H 1.09003 * 109.54014 * 62.88557 * 22 21 19 39 39 H 1.08992 * 109.54792 * 183.06181 * 22 21 19 40 40 H 1.08994 * 109.52452 * 176.88396 * 23 22 21 41 41 H 1.08999 * 109.51651 * 297.01070 * 23 22 21 42 42 H 1.09002 * 109.47562 * 62.37848 * 24 23 22 43 43 H 1.08993 * 109.47748 * 182.39828 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0636 -4.8197 -0.0001 12 1 0.4374 -4.7618 -0.8903 13 8 0.2417 -4.7442 1.1665 14 6 1.8286 -6.1448 0.0005 15 7 0.8812 -7.2557 -0.1204 16 6 1.3313 -8.5258 -0.1420 17 8 2.5206 -8.7492 -0.0617 18 6 0.3567 -9.6685 -0.2670 19 6 1.1218 -10.9935 -0.2675 20 1 1.7482 -11.0520 0.6226 21 6 0.1272 -12.1574 -0.2692 22 6 0.8995 -13.4787 -0.3306 23 6 1.7946 -13.4771 -1.5737 24 6 2.7247 -12.2622 -1.5216 25 8 1.9435 -11.0689 -1.4342 26 1 -0.4850 0.8401 -0.0004 27 1 0.3555 -2.3881 -0.0002 28 1 2.6846 -3.7146 0.8906 29 1 2.6847 -3.7146 -0.8894 30 1 0.7335 -4.7897 1.9977 31 1 2.5213 -6.1648 -0.8408 32 1 2.3858 -6.2423 0.9323 33 1 -0.0700 -7.0770 -0.1850 34 1 -0.3360 -9.6489 0.5744 35 1 -0.2003 -9.5707 -1.1987 36 1 -0.4707 -12.1269 0.6416 37 1 -0.5270 -12.0762 -1.1373 38 1 1.5159 -13.5826 0.5624 39 1 0.1965 -14.3097 -0.3870 40 1 2.3890 -14.3904 -1.5957 41 1 1.1747 -13.4242 -2.4687 42 1 3.3722 -12.3375 -0.6479 43 1 3.3346 -12.2325 -2.4245 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753909222.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:10 Heat of formation + Delta-G solvation = -168.513209 kcal Electronic energy + Delta-G solvation = -22489.909816 eV Core-core repulsion = 18954.479274 eV Total energy + Delta-G solvation = -3535.430542 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.06391 -39.93496 -38.84232 -36.06933 -35.23411 -34.49025 -33.83409 -33.18238 -30.84562 -29.18207 -26.97338 -25.34276 -24.47467 -23.34598 -22.75386 -21.20076 -21.14406 -19.25361 -18.25052 -17.65462 -17.53980 -17.10082 -16.85761 -16.45263 -16.25643 -15.80151 -15.56487 -15.34724 -15.30325 -14.92759 -14.63782 -14.22546 -13.96799 -13.85812 -13.54285 -13.38355 -13.14253 -12.97743 -12.80060 -12.76476 -12.15517 -12.12761 -11.96127 -11.94493 -11.81608 -11.64051 -11.25670 -11.13489 -10.99716 -10.73513 -10.29259 -10.07688 -9.02143 -7.95846 -5.25431 1.47405 1.48192 1.58421 1.72025 2.17119 2.55793 2.87753 3.35348 3.46344 3.61766 3.74204 3.77104 3.96208 3.99967 4.03382 4.15180 4.20771 4.25172 4.32863 4.44665 4.50259 4.59488 4.64366 4.69863 4.76618 4.81163 4.91308 4.92430 4.99527 5.09996 5.15415 5.20163 5.21038 5.40901 5.43614 5.48033 6.25579 6.37092 6.59844 6.79574 7.31539 7.32704 8.07693 8.31462 9.27534 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.054434 B = 0.002304 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.262284 B =12147.442890 C =12445.091535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.076 4.076 3 Si 0.976 3.024 4 H -0.266 1.266 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.248 4.248 8 H 0.076 0.924 9 N -0.739 5.739 10 C 0.121 3.879 11 C 0.110 3.890 12 H 0.101 0.899 13 O -0.561 6.561 14 C 0.103 3.897 15 N -0.716 5.716 16 C 0.508 3.492 17 O -0.580 6.580 18 C -0.130 4.130 19 C 0.101 3.899 20 H 0.047 0.953 21 C -0.146 4.146 22 C -0.124 4.124 23 C -0.152 4.152 24 C 0.056 3.944 25 O -0.397 6.397 26 H 0.252 0.748 27 H 0.377 0.623 28 H 0.030 0.970 29 H 0.031 0.969 30 H 0.385 0.615 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.415 0.585 34 H 0.140 0.860 35 H 0.117 0.883 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.062 0.938 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.070 0.930 42 H 0.042 0.958 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.972 -29.360 -0.167 29.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.269 4.269 3 Si 0.804 3.196 4 H -0.191 1.191 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.380 4.380 8 H 0.094 0.906 9 N -0.383 5.383 10 C -0.006 4.006 11 C 0.050 3.950 12 H 0.119 0.881 13 O -0.368 6.368 14 C -0.022 4.022 15 N -0.369 5.369 16 C 0.296 3.704 17 O -0.459 6.459 18 C -0.169 4.169 19 C 0.043 3.957 20 H 0.065 0.935 21 C -0.183 4.183 22 C -0.162 4.162 23 C -0.190 4.190 24 C -0.021 4.021 25 O -0.317 6.317 26 H 0.060 0.940 27 H 0.210 0.790 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.233 0.767 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.252 0.748 34 H 0.158 0.842 35 H 0.135 0.865 36 H 0.111 0.889 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.089 0.911 42 H 0.060 0.940 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.422 -29.232 -0.687 29.243 hybrid contribution 0.338 1.110 0.450 1.245 sum -0.083 -28.122 -0.237 28.123 Atomic orbital electron populations 1.69841 1.06627 1.26057 1.59261 1.25614 0.96452 1.01226 1.03598 0.85044 0.78169 0.79633 0.76709 1.19069 1.21953 1.21944 1.19679 0.91503 0.85349 1.41444 0.90639 1.42413 1.05805 1.00706 1.89335 1.21407 0.94311 0.85891 0.99022 1.22071 0.92165 0.91177 0.89599 0.88071 1.86549 1.37485 1.96404 1.16346 1.21781 0.92260 0.85577 1.02569 1.45869 1.11406 1.05048 1.74588 1.21205 0.89742 0.84541 0.74945 1.90694 1.19081 1.85183 1.50955 1.21837 0.97632 0.90121 1.07304 1.21881 0.91502 0.94096 0.88231 0.93536 1.22206 0.98021 0.93880 1.04220 1.21615 0.98986 0.97751 0.97804 1.22175 0.99059 0.98473 0.99279 1.22641 0.93125 0.84533 1.01790 1.87938 1.59068 1.41108 1.43553 0.93953 0.79008 0.95208 0.95084 0.76665 0.91321 0.91219 0.74824 0.84237 0.86466 0.88880 0.90396 0.91941 0.89829 0.89596 0.91123 0.93968 0.88907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.83 13.06 21.65 0.28 -59.54 16 2 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 3 Si 0.98 46.44 29.55 68.60 2.03 48.47 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 6 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 7 C -0.25 -13.96 9.99 84.03 0.84 -13.12 16 8 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 9 N -0.74 -37.64 5.49 -343.44 -1.89 -39.52 16 10 C 0.12 4.67 5.92 86.38 0.51 5.18 16 11 C 0.11 3.29 3.09 30.60 0.09 3.38 16 12 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 13 O -0.56 -17.11 13.03 -148.98 -1.94 -19.05 16 14 C 0.10 2.69 5.31 86.38 0.46 3.14 16 15 N -0.72 -15.82 5.50 -463.06 -2.55 -18.37 16 16 C 0.51 12.37 7.71 87.66 0.68 13.04 16 17 O -0.58 -19.47 15.42 10.74 0.17 -19.31 16 18 C -0.13 -2.02 5.41 29.85 0.16 -1.85 16 19 C 0.10 1.83 2.19 30.63 0.07 1.89 16 20 H 0.05 0.99 7.96 -2.39 -0.02 0.97 16 21 C -0.15 -1.66 5.42 30.69 0.17 -1.50 16 22 C -0.12 -1.33 6.03 30.71 0.19 -1.15 16 23 C -0.15 -1.87 6.14 30.69 0.19 -1.68 16 24 C 0.06 1.00 6.84 72.01 0.49 1.49 16 25 O -0.40 -9.36 9.64 -135.21 -1.30 -10.66 16 26 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 27 H 0.38 20.72 7.54 -92.71 -0.70 20.02 16 28 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.38 9.74 9.04 -74.06 -0.67 9.07 16 31 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.42 7.37 8.47 -92.71 -0.79 6.58 16 34 H 0.14 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -75.15 353.85 -2.03 -77.18 By element: Atomic # 1 Polarization: 37.09 SS G_CDS: -1.14 Total: 35.95 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: 4.31 Total: 4.86 kcal Atomic # 7 Polarization: -113.29 SS G_CDS: -4.15 Total: -117.44 kcal Atomic # 8 Polarization: -45.95 SS G_CDS: -3.08 Total: -49.02 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -75.15 -2.03 -77.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753909222.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.334 kcal (2) G-P(sol) polarization free energy of solvation -75.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds