Wall clock time and date at job start Tue Mar 31 2020 03:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34778 * 120.00410 * 2 1 4 4 O 1.21587 * 119.99442 * 359.97438 * 3 2 1 5 5 N 1.34770 * 120.00535 * 180.02562 * 3 2 1 6 6 C 1.46497 * 120.00305 * 179.97438 * 5 3 2 7 7 C 1.50700 * 109.47128 * 179.97438 * 6 5 3 8 8 O 1.21280 * 120.00210 * 359.97438 * 7 6 5 9 9 N 1.34781 * 120.00044 * 180.02562 * 7 6 5 10 10 C 1.46494 * 119.99862 * 179.97438 * 9 7 6 11 11 C 1.53007 * 109.46928 * 179.97438 * 10 9 7 12 12 O 1.42899 * 113.41348 * 313.20372 * 11 10 9 13 13 C 1.53496 * 114.20479 * 180.02562 * 11 10 9 14 14 N 1.47066 * 87.98324 * 220.34620 * 13 11 10 15 15 C 1.36944 * 136.05683 * 207.08528 * 14 13 11 16 16 H 1.08004 * 119.99874 * 6.90177 * 15 14 13 17 17 C 1.38808 * 119.99887 * 186.89762 * 15 14 13 18 18 N 1.31620 * 119.99758 * 172.36849 * 17 15 14 19 19 Si 1.86803 * 120.00116 * 352.64805 * 17 15 14 20 20 H 1.48502 * 109.46980 * 175.03997 * 19 17 15 21 21 H 1.48501 * 109.46832 * 295.03703 * 19 17 15 22 22 H 1.48495 * 109.47214 * 55.03946 * 19 17 15 23 23 C 1.47058 * 87.88471 * 27.34220 * 14 13 11 24 24 H 1.08996 * 109.47102 * 59.99661 * 1 2 3 25 25 H 1.08999 * 109.47100 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46804 * 299.99763 * 1 2 3 27 27 H 0.97000 * 120.00124 * 179.97438 * 2 1 3 28 28 H 0.97002 * 119.99429 * 359.97438 * 5 3 2 29 29 H 1.09004 * 109.47033 * 60.00174 * 6 5 3 30 30 H 1.08998 * 109.47041 * 300.00126 * 6 5 3 31 31 H 0.96997 * 119.99638 * 359.97438 * 9 7 6 32 32 H 1.09001 * 109.47149 * 60.00719 * 10 9 7 33 33 H 1.08998 * 109.47686 * 300.00064 * 10 9 7 34 34 H 0.96703 * 113.99848 * 46.79570 * 12 11 10 35 35 H 1.09007 * 113.46615 * 105.56627 * 13 11 10 36 36 H 1.08998 * 113.52551 * 335.13818 * 13 11 10 37 37 H 0.96999 * 119.99710 * 5.38439 * 18 17 15 38 38 H 1.09001 * 113.46851 * 87.44175 * 23 14 13 39 39 H 1.09001 * 113.47037 * 217.87480 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 1.5310 2.2201 -0.0005 5 7 3.4867 1.1672 -0.0005 6 6 4.2192 2.4359 -0.0011 7 6 5.7008 2.1604 -0.0010 8 8 6.1051 1.0170 0.0000 9 7 6.5767 3.1849 -0.0009 10 6 8.0170 2.9171 -0.0002 11 6 8.7820 4.2421 -0.0009 12 8 8.2889 5.1821 -0.9577 13 6 10.3092 4.0871 -0.0009 14 7 10.3709 5.2073 0.9500 15 6 11.2840 6.1740 1.2769 16 1 12.1860 6.2844 0.6932 17 6 11.0504 7.0120 2.3585 18 7 11.9903 7.8386 2.7656 19 14 9.4048 6.9612 3.2412 20 1 9.4500 7.8572 4.4245 21 1 8.3337 7.4142 2.3178 22 1 9.1227 5.5718 3.6828 23 6 9.0230 4.8283 1.3999 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.9500 -0.8400 0.0004 28 1 3.9716 0.3271 -0.0005 29 1 3.9563 3.0076 0.8889 30 1 3.9555 3.0072 -0.8911 31 1 6.2534 4.0993 -0.0013 32 1 8.2807 2.3453 -0.8900 33 1 8.2800 2.3458 0.8900 34 1 7.3265 5.2773 -0.9555 35 1 10.7681 4.3097 -0.9643 36 1 10.6504 3.1412 0.4197 37 1 12.8164 7.9187 2.2636 38 1 9.0242 4.0777 2.1902 39 1 8.3861 5.6824 1.6301 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754768587.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:09 Heat of formation + Delta-G solvation = -74.040123 kcal Electronic energy + Delta-G solvation = -22487.551150 eV Core-core repulsion = 18852.676924 eV Total energy + Delta-G solvation = -3634.874225 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 286.147 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.55579 -40.99284 -40.14421 -36.82132 -35.70031 -35.51516 -35.27987 -34.43461 -31.04155 -29.51614 -27.59945 -27.15736 -26.18338 -23.29920 -22.00614 -21.76805 -21.22923 -20.06128 -19.69332 -18.63215 -17.74975 -17.61421 -17.13048 -16.89789 -16.43337 -16.27691 -15.90500 -15.68034 -15.27760 -15.22727 -15.05203 -14.90735 -14.32202 -14.20266 -14.02857 -13.62222 -13.43307 -13.16656 -13.00284 -12.83565 -12.37907 -11.91352 -11.77424 -11.50726 -11.35325 -11.11050 -11.01956 -10.63413 -10.47637 -10.21391 -9.83160 -9.21707 -8.67484 -5.48209 1.35680 1.45071 1.47747 1.48857 1.67491 2.10391 2.16348 2.54341 2.88615 2.96755 3.17763 3.29405 3.35841 3.61397 3.76182 4.26325 4.37921 4.38913 4.49705 4.50472 4.58237 4.65849 4.69914 4.74148 4.80010 4.99260 5.03406 5.14914 5.22411 5.28630 5.49540 5.92807 5.93569 6.31326 6.67786 6.76214 7.00446 7.05324 7.30342 7.52470 8.23240 8.88281 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.030898 B = 0.003074 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.988638 B = 9105.242056 C = 9619.832155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.739 5.739 3 C 0.699 3.301 4 O -0.633 6.633 5 N -0.731 5.731 6 C 0.121 3.879 7 C 0.520 3.480 8 O -0.567 6.567 9 N -0.713 5.713 10 C 0.121 3.879 11 C 0.105 3.895 12 O -0.537 6.537 13 C 0.128 3.872 14 N -0.656 5.656 15 C -0.289 4.289 16 H 0.046 0.954 17 C -0.091 4.091 18 N -0.971 5.971 19 Si 1.113 2.887 20 H -0.307 1.307 21 H -0.270 1.270 22 H -0.254 1.254 23 C 0.067 3.933 24 H 0.048 0.952 25 H 0.112 0.888 26 H 0.047 0.953 27 H 0.414 0.586 28 H 0.413 0.587 29 H 0.109 0.891 30 H 0.113 0.887 31 H 0.414 0.586 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.387 0.613 35 H 0.048 0.952 36 H 0.082 0.918 37 H 0.245 0.755 38 H 0.071 0.929 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.580 -19.138 -6.935 31.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.395 5.395 3 C 0.399 3.601 4 O -0.515 6.515 5 N -0.389 5.389 6 C -0.007 4.007 7 C 0.307 3.693 8 O -0.446 6.446 9 N -0.367 5.367 10 C -0.004 4.004 11 C 0.062 3.938 12 O -0.344 6.344 13 C 0.003 3.997 14 N -0.384 5.384 15 C -0.416 4.416 16 H 0.064 0.936 17 C -0.282 4.282 18 N -0.617 5.617 19 Si 0.939 3.061 20 H -0.236 1.236 21 H -0.197 1.197 22 H -0.179 1.179 23 C -0.058 4.058 24 H 0.067 0.933 25 H 0.130 0.870 26 H 0.066 0.934 27 H 0.250 0.750 28 H 0.251 0.749 29 H 0.127 0.873 30 H 0.131 0.869 31 H 0.252 0.748 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.237 0.763 35 H 0.066 0.934 36 H 0.100 0.900 37 H 0.054 0.946 38 H 0.088 0.912 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -23.847 -18.156 -5.763 30.521 hybrid contribution 1.562 -0.393 -1.194 2.005 sum -22.285 -18.550 -6.957 29.818 Atomic orbital electron populations 1.21556 0.77062 1.04118 1.01361 1.44865 1.08427 1.06860 1.79349 1.16061 0.81603 0.84714 0.77753 1.90919 1.68731 1.31939 1.59908 1.44672 1.04336 1.10040 1.79891 1.20937 0.86494 0.87051 1.06216 1.20627 0.88814 0.84776 0.75127 1.90701 1.80410 1.22352 1.51107 1.45684 1.05988 1.10221 1.74814 1.21701 0.79069 0.95321 1.04269 1.22734 0.94774 0.87733 0.88531 1.86657 1.27539 1.62643 1.57570 1.22647 0.91668 0.91634 0.93792 1.45785 1.16634 1.30971 1.45027 1.19952 0.99570 1.09478 1.12605 0.93606 1.27213 1.07484 0.96095 0.97360 1.71032 1.07538 1.43161 1.39968 0.83227 0.71237 0.77049 0.74624 1.23553 1.19673 1.17924 1.23796 0.86679 0.98355 0.96969 0.93280 0.87004 0.93371 0.75004 0.74875 0.87271 0.86944 0.74799 0.89398 0.89370 0.76264 0.93379 0.90034 0.94636 0.91184 0.92848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.96 10.70 127.77 1.37 2.32 16 2 N -0.74 -8.59 5.72 -500.19 -2.86 -11.45 16 3 C 0.70 13.20 8.57 179.06 1.53 14.73 16 4 O -0.63 -17.19 16.34 -3.99 -0.07 -17.26 16 5 N -0.73 -11.33 5.53 -482.31 -2.67 -13.99 16 6 C 0.12 1.71 6.15 85.63 0.53 2.24 16 7 C 0.52 8.88 7.90 87.66 0.69 9.57 16 8 O -0.57 -13.23 15.67 -3.03 -0.05 -13.28 16 9 N -0.71 -11.07 5.34 -463.06 -2.47 -13.54 16 10 C 0.12 2.51 5.43 86.38 0.47 2.98 16 11 C 0.11 3.02 1.74 -10.37 -0.02 3.00 16 12 O -0.54 -15.42 13.56 -148.98 -2.02 -17.44 16 13 C 0.13 4.67 8.10 83.17 0.67 5.34 16 14 N -0.66 -31.36 3.69 -738.49 -2.73 -34.09 16 15 C -0.29 -17.12 11.08 84.03 0.93 -16.19 16 16 H 0.05 2.97 8.05 -2.91 -0.02 2.94 16 17 C -0.09 -5.50 5.50 84.86 0.47 -5.03 16 18 N -0.97 -63.88 13.70 21.65 0.30 -63.58 16 19 Si 1.11 52.91 25.13 68.60 1.72 54.63 16 20 H -0.31 -15.13 7.11 99.48 0.71 -14.42 16 21 H -0.27 -11.64 6.64 99.48 0.66 -10.98 16 22 H -0.25 -10.55 6.13 99.48 0.61 -9.94 16 23 C 0.07 2.46 5.14 83.26 0.43 2.88 16 24 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 26 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 27 H 0.41 2.30 8.84 -92.71 -0.82 1.48 16 28 H 0.41 5.66 7.45 -92.71 -0.69 4.97 16 29 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.41 4.42 6.95 -92.71 -0.64 3.78 16 32 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.09 1.87 7.89 -2.39 -0.02 1.85 16 34 H 0.39 6.78 7.21 -74.06 -0.53 6.25 16 35 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 36 H 0.08 2.57 8.10 -2.39 -0.02 2.55 16 37 H 0.24 16.20 8.73 -92.71 -0.81 15.39 16 38 H 0.07 2.39 7.50 -2.39 -0.02 2.37 16 39 H 0.05 2.01 4.67 -2.39 -0.01 1.99 16 Total: -1.00 -86.80 327.26 -5.52 -92.32 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -1.75 Total: 15.84 kcal Atomic # 6 Polarization: 14.78 SS G_CDS: 7.07 Total: 21.85 kcal Atomic # 7 Polarization: -126.22 SS G_CDS: -10.43 Total: -136.65 kcal Atomic # 8 Polarization: -45.85 SS G_CDS: -2.13 Total: -47.98 kcal Atomic # 14 Polarization: 52.91 SS G_CDS: 1.72 Total: 54.63 kcal Total: -86.80 -5.52 -92.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754768587.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.280 kcal (2) G-P(sol) polarization free energy of solvation -86.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds