Wall clock time and date at job start Tue Mar 31 2020 03:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86806 * 119.99465 * 2 1 4 4 H 1.48497 * 109.46815 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46897 * 299.99496 * 3 2 1 6 6 H 1.48494 * 109.47312 * 60.00040 * 3 2 1 7 7 C 1.38804 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99760 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00263 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99811 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46895 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47208 * 179.97438 * 11 10 9 13 13 C 1.46498 * 120.00372 * 270.00388 * 12 11 10 14 14 C 1.53008 * 109.46825 * 269.99988 * 13 12 11 15 15 O 1.42898 * 109.47248 * 64.99699 * 14 13 12 16 16 C 1.34781 * 119.99654 * 90.00118 * 12 11 10 17 17 O 1.21276 * 120.00335 * 359.97438 * 16 12 11 18 18 C 1.50700 * 119.99935 * 180.02562 * 16 12 11 19 19 C 1.52997 * 109.47359 * 180.02562 * 18 16 12 20 20 H 1.08999 * 110.33077 * 52.74653 * 19 18 16 21 21 C 1.54477 * 110.37308 * 175.00066 * 19 18 16 22 22 C 1.54507 * 104.06510 * 142.80822 * 21 19 18 23 23 C 1.54483 * 104.06211 * 359.97438 * 22 21 19 24 24 O 1.44428 * 104.89902 * 335.96812 * 23 22 21 25 25 H 0.96999 * 119.99671 * 0.02562 * 1 2 3 26 26 H 0.96996 * 120.00039 * 359.97438 * 9 7 2 27 27 H 1.09001 * 109.47386 * 60.00216 * 10 9 7 28 28 H 1.08994 * 109.47539 * 299.99809 * 10 9 7 29 29 H 1.09005 * 109.47360 * 60.00414 * 11 10 9 30 30 H 1.09004 * 109.47388 * 299.99892 * 11 10 9 31 31 H 1.09000 * 109.47081 * 29.99749 * 13 12 11 32 32 H 1.08996 * 109.47425 * 150.00012 * 13 12 11 33 33 H 1.09002 * 109.46566 * 184.99783 * 14 13 12 34 34 H 1.09005 * 109.46909 * 304.99522 * 14 13 12 35 35 H 0.96694 * 113.99912 * 179.97438 * 15 14 13 36 36 H 1.08999 * 109.47145 * 59.99786 * 18 16 12 37 37 H 1.09008 * 109.47102 * 300.00130 * 18 16 12 38 38 H 1.09000 * 110.51486 * 24.16264 * 21 19 18 39 39 H 1.09000 * 110.62726 * 261.50882 * 21 19 18 40 40 H 1.09005 * 110.51421 * 241.35469 * 22 21 19 41 41 H 1.09004 * 110.63217 * 118.69765 * 22 21 19 42 42 H 1.09002 * 110.37322 * 94.85326 * 23 22 21 43 43 H 1.08999 * 110.37312 * 217.08002 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0583 -3.6567 0.0005 11 6 1.0641 -4.8196 0.0012 12 7 1.7967 -6.0883 0.0006 13 6 2.1621 -6.7226 -1.2684 14 6 1.0401 -7.6648 -1.7094 15 8 -0.1367 -6.9048 -1.9916 16 6 2.1344 -6.6720 1.1676 17 8 1.8324 -6.1467 2.2181 18 6 2.8885 -7.9768 1.1670 19 6 3.1439 -8.4189 2.6093 20 1 2.2108 -8.4304 3.1727 21 6 3.8049 -9.8149 2.6348 22 6 4.8070 -9.7344 3.8080 23 6 4.6335 -8.2991 4.3521 24 8 4.1061 -7.5419 3.2410 25 1 -0.4849 0.8401 -0.0004 26 1 0.3557 -2.3881 0.0005 27 1 2.6850 -3.7144 0.8905 28 1 2.6849 -3.7144 -0.8894 29 1 0.4371 -4.7622 -0.8886 30 1 0.4378 -4.7618 0.8914 31 1 2.3120 -5.9555 -2.0281 32 1 3.0834 -7.2905 -1.1387 33 1 1.3488 -8.2029 -2.6056 34 1 0.8297 -8.3775 -0.9119 35 1 -0.8903 -7.4386 -2.2780 36 1 3.8406 -7.8460 0.6527 37 1 2.2995 -8.7366 0.6533 38 1 4.3281 -10.0069 1.6980 39 1 3.0603 -10.5889 2.8209 40 1 5.8258 -9.8866 3.4513 41 1 4.5589 -10.4670 4.5760 42 1 3.9298 -8.2913 5.1846 43 1 5.5953 -7.8931 4.6655 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754878328.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:46 Heat of formation + Delta-G solvation = -117.855873 kcal Electronic energy + Delta-G solvation = -23350.596067 eV Core-core repulsion = 19817.362191 eV Total energy + Delta-G solvation = -3533.233875 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.17295 -39.01921 -37.13811 -35.46840 -34.22744 -32.57874 -31.95987 -31.15706 -29.41199 -27.80996 -26.26558 -23.60852 -23.14768 -22.31224 -21.41139 -20.94804 -18.87343 -17.80693 -17.08750 -17.03961 -16.29887 -16.09378 -15.89843 -15.52915 -14.79962 -14.58541 -14.30273 -13.90970 -13.72076 -13.48805 -13.26182 -13.13668 -12.64658 -12.54606 -12.33401 -12.21387 -11.96594 -11.57354 -11.44490 -11.29852 -11.07755 -10.87994 -10.84055 -10.78432 -10.51185 -10.17635 -9.98623 -9.80964 -9.67087 -9.45609 -8.76332 -8.35561 -6.80474 -5.65399 -2.93758 2.87687 3.15715 3.51320 3.56457 3.59287 3.75870 4.09435 4.32372 4.36491 4.62253 4.70869 4.71703 4.84571 4.91399 4.99360 5.04745 5.14219 5.17439 5.27037 5.31837 5.45633 5.46129 5.55599 5.64291 5.65590 5.68579 5.76222 5.86664 5.91705 6.06759 6.21153 6.36220 6.72034 6.76513 6.91257 7.10642 7.48635 7.69248 7.81197 8.46112 8.53758 9.64105 10.22209 10.57604 11.57811 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.015776 B = 0.003868 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.446256 B = 7237.408583 C = 8623.701135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.908 3.092 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.233 4.233 8 H 0.070 0.930 9 N -0.730 5.730 10 C 0.143 3.857 11 C 0.113 3.887 12 N -0.602 5.602 13 C 0.106 3.894 14 C 0.058 3.942 15 O -0.561 6.561 16 C 0.508 3.492 17 O -0.521 6.521 18 C -0.136 4.136 19 C 0.090 3.910 20 H 0.077 0.923 21 C -0.152 4.152 22 C -0.155 4.155 23 C 0.042 3.958 24 O -0.356 6.356 25 H 0.254 0.746 26 H 0.384 0.616 27 H 0.022 0.978 28 H 0.015 0.985 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.053 0.947 34 H 0.044 0.956 35 H 0.376 0.624 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.058 0.942 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.232 -27.070 -0.256 27.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.212 4.212 3 Si 0.739 3.261 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.365 4.365 8 H 0.088 0.912 9 N -0.374 5.374 10 C 0.014 3.986 11 C -0.009 4.009 12 N -0.335 5.335 13 C -0.018 4.018 14 C -0.021 4.021 15 O -0.366 6.366 16 C 0.296 3.704 17 O -0.396 6.396 18 C -0.176 4.176 19 C 0.032 3.968 20 H 0.095 0.905 21 C -0.189 4.189 22 C -0.193 4.193 23 C -0.035 4.035 24 O -0.274 6.274 25 H 0.064 0.936 26 H 0.217 0.783 27 H 0.039 0.961 28 H 0.033 0.967 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.223 0.777 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.077 0.923 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.663 -25.942 0.425 26.787 hybrid contribution -0.179 0.153 -0.224 0.325 sum 6.484 -25.789 0.201 26.592 Atomic orbital electron populations 1.69685 1.05072 1.25398 1.58169 1.24742 0.95555 0.97635 1.03268 0.86092 0.78766 0.84120 0.77114 1.20589 1.21926 1.21873 1.19273 0.91036 0.84059 1.42096 0.91204 1.42220 1.05887 0.99839 1.89502 1.20919 0.94005 0.85852 0.97825 1.21671 0.94494 0.81216 1.03505 1.47816 1.57243 1.23517 1.04973 1.21680 0.95693 0.97389 0.87033 1.22711 0.87044 0.93760 0.98593 1.86613 1.22351 1.37515 1.90123 1.20461 0.79828 0.86446 0.83711 1.90753 1.53495 1.64660 1.30668 1.21843 1.01951 0.96307 0.97517 1.22757 0.93473 0.87852 0.92763 0.90495 1.23008 0.98891 0.97527 0.99517 1.22938 1.00203 0.98027 0.98110 1.23378 0.99397 0.90369 0.90366 1.89345 1.56777 1.37835 1.43462 0.93641 0.78268 0.96055 0.96706 0.89662 0.90233 0.89009 0.89137 0.92847 0.93806 0.77713 0.88131 0.88090 0.90518 0.90440 0.90740 0.90661 0.92335 0.89217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.74 13.06 55.49 0.72 -29.01 16 2 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16 3 Si 0.91 23.59 29.55 -169.99 -5.02 18.56 16 4 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 6 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 7 C -0.23 -7.05 9.99 -15.06 -0.15 -7.20 16 8 H 0.07 2.06 7.83 -52.49 -0.41 1.65 16 9 N -0.73 -20.41 5.60 -59.91 -0.34 -20.75 16 10 C 0.14 3.31 6.58 -4.04 -0.03 3.28 16 11 C 0.11 2.20 5.34 -4.04 -0.02 2.17 16 12 N -0.60 -9.19 2.44 -173.68 -0.42 -9.61 16 13 C 0.11 1.13 5.62 -4.04 -0.02 1.11 16 14 C 0.06 0.49 7.38 37.16 0.27 0.77 16 15 O -0.56 -6.16 12.48 -35.23 -0.44 -6.60 16 16 C 0.51 8.08 7.60 -10.98 -0.08 8.00 16 17 O -0.52 -10.87 15.19 -1.02 -0.02 -10.89 16 18 C -0.14 -1.43 3.88 -27.88 -0.11 -1.54 16 19 C 0.09 1.01 2.74 -25.96 -0.07 0.94 16 20 H 0.08 0.96 7.91 -51.93 -0.41 0.55 16 21 C -0.15 -1.13 6.63 -25.17 -0.17 -1.29 16 22 C -0.15 -1.14 7.09 -25.16 -0.18 -1.32 16 23 C 0.04 0.43 7.62 37.94 0.29 0.72 16 24 O -0.36 -5.12 10.94 -41.81 -0.46 -5.57 16 25 H 0.25 7.74 8.31 -40.82 -0.34 7.40 16 26 H 0.38 11.13 7.67 -40.82 -0.31 10.82 16 27 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.09 1.63 7.11 -51.93 -0.37 1.26 16 30 H 0.08 1.71 7.42 -51.93 -0.39 1.33 16 31 H 0.09 1.08 8.07 -51.93 -0.42 0.66 16 32 H 0.09 0.68 6.44 -51.93 -0.33 0.35 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.04 0.33 7.30 -51.93 -0.38 -0.05 16 35 H 0.38 2.40 9.12 45.56 0.42 2.82 16 36 H 0.10 0.93 7.40 -51.93 -0.38 0.54 16 37 H 0.10 0.72 7.26 -51.92 -0.38 0.34 16 38 H 0.08 0.48 7.87 -51.93 -0.41 0.07 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 351.42 15.07 5.30 5.30 Total: -1.00 -38.86 351.42 -7.33 -46.19 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -6.29 Total: 7.34 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: -0.36 Total: 5.04 kcal Atomic # 7 Polarization: -59.34 SS G_CDS: -0.03 Total: -59.37 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -0.91 Total: -23.06 kcal Atomic # 14 Polarization: 23.59 SS G_CDS: -5.02 Total: 18.56 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -38.86 -7.33 -46.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754878328.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.669 kcal (2) G-P(sol) polarization free energy of solvation -38.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds