Wall clock time and date at job start Tue Mar 31 2020 03:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86806 * 119.99465 * 2 1 4 4 H 1.48497 * 109.46815 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46897 * 299.99496 * 3 2 1 6 6 H 1.48494 * 109.47312 * 60.00040 * 3 2 1 7 7 C 1.38804 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99760 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00263 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99811 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46895 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47208 * 179.97438 * 11 10 9 13 13 C 1.46498 * 120.00372 * 270.00388 * 12 11 10 14 14 C 1.53008 * 109.46825 * 269.99988 * 13 12 11 15 15 O 1.42898 * 109.47248 * 64.99699 * 14 13 12 16 16 C 1.34781 * 119.99654 * 90.00118 * 12 11 10 17 17 O 1.21276 * 120.00335 * 359.97438 * 16 12 11 18 18 C 1.50700 * 119.99935 * 180.02562 * 16 12 11 19 19 C 1.52997 * 109.47359 * 180.02562 * 18 16 12 20 20 H 1.08999 * 110.33077 * 52.74653 * 19 18 16 21 21 C 1.54477 * 110.37308 * 175.00066 * 19 18 16 22 22 C 1.54507 * 104.06510 * 142.80822 * 21 19 18 23 23 C 1.54483 * 104.06211 * 359.97438 * 22 21 19 24 24 O 1.44428 * 104.89902 * 335.96812 * 23 22 21 25 25 H 0.96999 * 119.99671 * 0.02562 * 1 2 3 26 26 H 0.96996 * 120.00039 * 359.97438 * 9 7 2 27 27 H 1.09001 * 109.47386 * 60.00216 * 10 9 7 28 28 H 1.08994 * 109.47539 * 299.99809 * 10 9 7 29 29 H 1.09005 * 109.47360 * 60.00414 * 11 10 9 30 30 H 1.09004 * 109.47388 * 299.99892 * 11 10 9 31 31 H 1.09000 * 109.47081 * 29.99749 * 13 12 11 32 32 H 1.08996 * 109.47425 * 150.00012 * 13 12 11 33 33 H 1.09002 * 109.46566 * 184.99783 * 14 13 12 34 34 H 1.09005 * 109.46909 * 304.99522 * 14 13 12 35 35 H 0.96694 * 113.99912 * 179.97438 * 15 14 13 36 36 H 1.08999 * 109.47145 * 59.99786 * 18 16 12 37 37 H 1.09008 * 109.47102 * 300.00130 * 18 16 12 38 38 H 1.09000 * 110.51486 * 24.16264 * 21 19 18 39 39 H 1.09000 * 110.62726 * 261.50882 * 21 19 18 40 40 H 1.09005 * 110.51421 * 241.35469 * 22 21 19 41 41 H 1.09004 * 110.63217 * 118.69765 * 22 21 19 42 42 H 1.09002 * 110.37322 * 94.85326 * 23 22 21 43 43 H 1.08999 * 110.37312 * 217.08002 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0583 -3.6567 0.0005 11 6 1.0641 -4.8196 0.0012 12 7 1.7967 -6.0883 0.0006 13 6 2.1621 -6.7226 -1.2684 14 6 1.0401 -7.6648 -1.7094 15 8 -0.1367 -6.9048 -1.9916 16 6 2.1344 -6.6720 1.1676 17 8 1.8324 -6.1467 2.2181 18 6 2.8885 -7.9768 1.1670 19 6 3.1439 -8.4189 2.6093 20 1 2.2108 -8.4304 3.1727 21 6 3.8049 -9.8149 2.6348 22 6 4.8070 -9.7344 3.8080 23 6 4.6335 -8.2991 4.3521 24 8 4.1061 -7.5419 3.2410 25 1 -0.4849 0.8401 -0.0004 26 1 0.3557 -2.3881 0.0005 27 1 2.6850 -3.7144 0.8905 28 1 2.6849 -3.7144 -0.8894 29 1 0.4371 -4.7622 -0.8886 30 1 0.4378 -4.7618 0.8914 31 1 2.3120 -5.9555 -2.0281 32 1 3.0834 -7.2905 -1.1387 33 1 1.3488 -8.2029 -2.6056 34 1 0.8297 -8.3775 -0.9119 35 1 -0.8903 -7.4386 -2.2780 36 1 3.8406 -7.8460 0.6527 37 1 2.2995 -8.7366 0.6533 38 1 4.3281 -10.0069 1.6980 39 1 3.0603 -10.5889 2.8209 40 1 5.8258 -9.8866 3.4513 41 1 4.5589 -10.4670 4.5760 42 1 3.9298 -8.2913 5.1846 43 1 5.5953 -7.8931 4.6655 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754878328.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:46 Heat of formation + Delta-G solvation = -149.480252 kcal Electronic energy + Delta-G solvation = -23351.967402 eV Core-core repulsion = 19817.362191 eV Total energy + Delta-G solvation = -3534.605211 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.27169 -39.95520 -38.06342 -37.08596 -35.86186 -33.79940 -33.14229 -32.49694 -30.69103 -29.13638 -27.45055 -25.52588 -23.98811 -23.56316 -22.74997 -21.80616 -20.10992 -19.19412 -18.62401 -17.96387 -17.52227 -17.02718 -16.87774 -16.60689 -16.28515 -15.95745 -15.41466 -15.30497 -15.10817 -15.03708 -14.59378 -14.49703 -13.95179 -13.45564 -13.26036 -13.14440 -13.06529 -12.91405 -12.66825 -12.57824 -12.50163 -12.24314 -12.11128 -12.08415 -12.01660 -11.89010 -11.43569 -11.01975 -10.89743 -10.72605 -10.69268 -9.66453 -9.09840 -7.99749 -5.31494 1.43699 1.46800 1.56952 1.68206 1.97671 2.54089 3.00263 3.32729 3.46827 3.51185 3.65142 3.86497 4.05407 4.06813 4.12624 4.16845 4.18034 4.26296 4.31421 4.37687 4.50806 4.54731 4.59091 4.61854 4.67521 4.74320 4.87120 4.92977 4.96514 4.99026 5.05485 5.07838 5.16155 5.24768 5.40239 5.57150 5.98216 6.21466 6.48140 7.01697 7.25007 7.26954 7.97924 8.24690 9.24083 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.015776 B = 0.003868 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.446256 B = 7237.408583 C = 8623.701135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.074 4.074 3 Si 0.982 3.018 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.291 1.291 7 C -0.253 4.253 8 H 0.072 0.928 9 N -0.743 5.743 10 C 0.151 3.849 11 C 0.134 3.866 12 N -0.601 5.601 13 C 0.094 3.906 14 C 0.059 3.941 15 O -0.597 6.597 16 C 0.498 3.502 17 O -0.585 6.585 18 C -0.124 4.124 19 C 0.078 3.922 20 H 0.052 0.948 21 C -0.140 4.140 22 C -0.148 4.148 23 C 0.030 3.970 24 O -0.400 6.400 25 H 0.254 0.746 26 H 0.375 0.625 27 H -0.005 1.005 28 H 0.027 0.973 29 H 0.089 0.911 30 H 0.048 0.952 31 H 0.079 0.921 32 H 0.130 0.870 33 H 0.090 0.910 34 H 0.058 0.942 35 H 0.394 0.606 36 H 0.123 0.877 37 H 0.146 0.854 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.051 0.949 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.881 -29.544 -1.741 30.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.810 3.190 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.218 1.218 7 C -0.385 4.385 8 H 0.090 0.910 9 N -0.386 5.386 10 C 0.023 3.977 11 C 0.009 3.991 12 N -0.333 5.333 13 C -0.027 4.027 14 C -0.020 4.020 15 O -0.405 6.405 16 C 0.288 3.712 17 O -0.464 6.464 18 C -0.163 4.163 19 C 0.021 3.979 20 H 0.070 0.930 21 C -0.178 4.178 22 C -0.185 4.185 23 C -0.047 4.047 24 O -0.320 6.320 25 H 0.063 0.937 26 H 0.206 0.794 27 H 0.013 0.987 28 H 0.045 0.955 29 H 0.107 0.893 30 H 0.067 0.933 31 H 0.097 0.903 32 H 0.148 0.852 33 H 0.108 0.892 34 H 0.077 0.923 35 H 0.243 0.757 36 H 0.141 0.859 37 H 0.164 0.836 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.105 0.895 41 H 0.110 0.890 42 H 0.069 0.931 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.338 -28.486 -1.104 29.702 hybrid contribution -0.700 0.902 0.254 1.170 sum 7.638 -27.584 -0.850 28.635 Atomic orbital electron populations 1.69848 1.06713 1.26325 1.58997 1.25687 0.96576 1.01373 1.03033 0.84959 0.78024 0.79035 0.77010 1.19138 1.21135 1.21766 1.19645 0.91399 0.85253 1.42163 0.90986 1.42413 1.05639 1.01051 1.89530 1.20939 0.94380 0.85644 0.96732 1.21150 0.93493 0.82370 1.02049 1.47923 1.56377 1.21924 1.07058 1.22139 0.98538 0.97787 0.84264 1.22804 0.85503 0.93007 1.00651 1.86556 1.23940 1.39553 1.90473 1.21566 0.79069 0.87873 0.82665 1.90725 1.56018 1.66673 1.32974 1.21952 1.02547 0.93822 0.97949 1.22934 0.92521 0.89913 0.92578 0.92979 1.22990 0.99111 0.95094 1.00557 1.22932 1.01039 0.96007 0.98572 1.23582 0.99215 0.92308 0.89591 1.89301 1.57594 1.40312 1.44826 0.93704 0.79366 0.98692 0.95523 0.89290 0.93319 0.90266 0.85186 0.89190 0.92337 0.75663 0.85923 0.83648 0.88280 0.88458 0.89527 0.88962 0.93078 0.88849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.85 13.06 21.65 0.28 -62.56 16 2 C -0.07 -4.58 5.50 84.86 0.47 -4.11 16 3 Si 0.98 48.87 29.55 68.60 2.03 50.89 16 4 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 6 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 7 C -0.25 -15.61 9.99 84.03 0.84 -14.77 16 8 H 0.07 4.31 7.83 -2.91 -0.02 4.28 16 9 N -0.74 -43.10 5.60 -343.47 -1.92 -45.02 16 10 C 0.15 7.27 6.58 86.38 0.57 7.84 16 11 C 0.13 5.38 5.34 86.38 0.46 5.84 16 12 N -0.60 -18.12 2.44 -821.80 -2.00 -20.12 16 13 C 0.09 1.77 5.62 86.38 0.49 2.26 16 14 C 0.06 0.79 7.38 71.98 0.53 1.33 16 15 O -0.60 -12.11 12.48 -148.98 -1.86 -13.97 16 16 C 0.50 15.84 7.60 87.66 0.67 16.51 16 17 O -0.58 -25.80 15.19 3.28 0.05 -25.75 16 18 C -0.12 -2.28 3.88 29.85 0.12 -2.16 16 19 C 0.08 1.68 2.74 31.10 0.09 1.77 16 20 H 0.05 1.33 7.91 -2.39 -0.02 1.31 16 21 C -0.14 -1.59 6.63 31.61 0.21 -1.38 16 22 C -0.15 -1.80 7.09 31.61 0.22 -1.57 16 23 C 0.03 0.60 7.62 72.49 0.55 1.15 16 24 O -0.40 -11.68 10.94 -142.69 -1.56 -13.24 16 25 H 0.25 15.72 8.31 -92.71 -0.77 14.95 16 26 H 0.37 22.72 7.67 -92.71 -0.71 22.01 16 27 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 28 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.09 3.50 7.11 -2.38 -0.02 3.49 16 30 H 0.05 2.25 7.42 -2.38 -0.02 2.23 16 31 H 0.08 1.71 8.07 -2.39 -0.02 1.69 16 32 H 0.13 1.39 6.44 -2.39 -0.02 1.37 16 33 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.06 0.63 7.30 -2.38 -0.02 0.62 16 35 H 0.39 4.35 9.12 -74.06 -0.68 3.67 16 36 H 0.12 1.77 7.40 -2.39 -0.02 1.75 16 37 H 0.15 1.36 7.26 -2.38 -0.02 1.34 16 38 H 0.10 0.72 7.87 -2.39 -0.02 0.70 16 39 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 41 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 42 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.09 1.70 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -89.48 351.42 -0.15 -89.63 By element: Atomic # 1 Polarization: 27.82 SS G_CDS: -0.37 Total: 27.44 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: 5.21 Total: 12.70 kcal Atomic # 7 Polarization: -124.06 SS G_CDS: -3.64 Total: -127.70 kcal Atomic # 8 Polarization: -49.59 SS G_CDS: -3.37 Total: -52.96 kcal Atomic # 14 Polarization: 48.87 SS G_CDS: 2.03 Total: 50.89 kcal Total: -89.48 -0.15 -89.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754878328.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.848 kcal (2) G-P(sol) polarization free energy of solvation -89.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds