Wall clock time and date at job start Tue Mar 31 2020 03:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13612 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47306 * 26.72196 * 3 2 1 5 5 S 1.81396 * 109.47360 * 179.97438 * 4 3 2 6 6 C 1.76204 * 103.00116 * 179.97438 * 5 4 3 7 7 N 1.29642 * 125.40847 * 359.69884 * 6 5 4 8 8 N 1.37759 * 115.61181 * 179.79521 * 7 6 5 9 9 C 1.29648 * 115.61058 * 0.49994 * 8 7 6 10 10 S 1.76199 * 125.40902 * 179.74210 * 9 8 7 11 11 C 1.81400 * 102.99848 * 359.97438 * 10 9 8 12 12 C 1.50696 * 109.47065 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00032 * 359.97438 * 12 11 10 14 14 C 1.37880 * 120.00065 * 180.02562 * 12 11 10 15 15 N 1.31510 * 120.00233 * 0.02562 * 14 12 11 16 16 Si 1.86808 * 119.99984 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.46985 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.46721 * 119.99840 * 16 14 12 19 19 H 1.48493 * 109.46855 * 239.99748 * 16 14 12 20 20 S 1.76032 * 109.18349 * 359.73888 * 9 8 7 21 21 H 1.09002 * 109.47132 * 146.72353 * 3 2 1 22 22 H 1.09001 * 109.47213 * 266.72382 * 3 2 1 23 23 H 1.09002 * 109.47153 * 300.00144 * 4 3 2 24 24 H 1.08998 * 109.47533 * 59.99773 * 4 3 2 25 25 H 1.09002 * 109.47274 * 300.00305 * 11 10 9 26 26 H 1.09003 * 109.47294 * 60.00236 * 11 10 9 27 27 H 0.96997 * 120.00522 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1187 -1.2875 -0.6486 5 16 4.9326 -1.2864 -0.6493 6 6 5.3297 -2.8201 -1.4206 7 7 4.4695 -3.6894 -1.8507 8 7 5.0038 -4.8212 -2.4264 9 6 6.2987 -4.8773 -2.4554 10 16 7.2485 -6.2030 -3.1226 11 6 5.9797 -7.3619 -3.7036 12 6 6.6437 -8.5707 -4.3109 13 1 7.7213 -8.6351 -4.3445 14 6 5.8756 -9.5940 -4.8247 15 7 4.5634 -9.5149 -4.7852 16 14 6.6988 -11.0921 -5.5783 17 1 8.1737 -10.9371 -5.5022 18 1 6.2892 -12.3092 -4.8328 19 1 6.2877 -11.2202 -6.9994 20 16 6.9575 -3.4186 -1.7226 21 1 2.9710 0.8600 -0.5639 22 1 2.9714 0.0596 1.0260 23 1 2.7557 -2.1468 -0.0848 24 1 2.7554 -1.3465 -1.6746 25 1 5.3591 -7.6726 -2.8630 26 1 5.3574 -6.8735 -4.4535 27 1 4.0231 -10.2350 -5.1464 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000001665067.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:09 Heat of formation + Delta-G solvation = 52.650440 kcal Electronic energy + Delta-G solvation = -14200.723318 eV Core-core repulsion = 11530.216570 eV Total energy + Delta-G solvation = -2670.506748 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 286.992 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.42636 -37.97568 -35.37362 -34.14867 -33.20371 -30.79895 -27.10567 -25.82585 -25.29800 -23.14348 -20.68571 -18.81689 -18.75418 -18.39260 -17.46507 -16.68640 -16.58522 -16.23727 -15.60887 -14.95624 -14.88662 -14.62806 -14.48792 -14.39265 -14.21825 -13.55757 -12.97985 -12.84852 -12.76311 -12.60962 -12.59955 -12.37259 -12.12762 -11.73514 -11.64933 -11.26172 -11.23774 -10.81303 -10.62552 -9.21924 -8.65497 -8.37108 -6.55282 -0.82287 -0.67426 -0.18064 -0.00439 0.56001 0.83684 0.89461 1.38004 1.42589 1.43285 1.58492 1.75760 1.78650 2.34762 2.98309 3.09382 3.39444 3.72822 3.86001 4.00071 4.46193 4.71999 4.79620 4.88535 4.91843 5.48820 5.72869 6.53941 6.55378 6.58070 7.15307 8.75103 Molecular weight = 286.99amu Principal moments of inertia in cm(-1) A = 0.027416 B = 0.003182 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.062796 B = 8796.235615 C = 9791.549591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C 0.241 3.759 3 C 0.002 3.998 4 C -0.124 4.124 5 S 0.102 5.898 6 C -0.001 4.001 7 N -0.313 5.313 8 N -0.329 5.329 9 C 0.018 3.982 10 S 0.014 5.986 11 C 0.073 3.927 12 C -0.544 4.544 13 H 0.079 0.921 14 C 0.017 3.983 15 N -0.924 5.924 16 Si 0.984 3.016 17 H -0.255 1.255 18 H -0.275 1.275 19 H -0.275 1.275 20 S 0.184 5.816 21 H 0.157 0.843 22 H 0.157 0.843 23 H 0.097 0.903 24 H 0.097 0.903 25 H 0.021 0.979 26 H 0.021 0.979 27 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.792 20.309 10.202 23.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.175 5.175 2 C -0.078 4.078 3 C -0.039 4.039 4 C -0.276 4.276 5 S 0.330 5.670 6 C -0.400 4.400 7 N -0.144 5.144 8 N -0.160 5.160 9 C -0.381 4.381 10 S 0.244 5.756 11 C -0.077 4.077 12 C -0.584 4.584 13 H 0.097 0.903 14 C -0.185 4.185 15 N -0.561 5.561 16 Si 0.807 3.193 17 H -0.178 1.178 18 H -0.200 1.200 19 H -0.200 1.200 20 S 0.419 5.581 21 H 0.175 0.825 22 H 0.175 0.825 23 H 0.116 0.884 24 H 0.116 0.884 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.351 20.746 10.424 23.826 hybrid contribution -2.097 -2.049 -1.030 3.108 sum 3.255 18.697 9.393 21.175 Atomic orbital electron populations 1.81331 1.15231 1.10012 1.10884 1.29398 0.95335 0.91682 0.91391 1.19145 0.79474 0.97851 1.07449 1.23692 0.94141 1.02893 1.06885 1.85019 1.05431 1.07518 1.69031 1.31398 0.97055 1.06481 1.05042 1.75384 1.27783 0.97924 1.13286 1.75579 1.07736 1.14484 1.18249 1.31293 0.97980 1.05260 1.03539 1.85171 1.11668 1.10126 1.68614 1.21092 0.93839 0.94526 0.98205 1.20989 0.94139 1.02125 1.41123 0.90265 1.26014 0.95303 1.01774 0.95450 1.70117 1.05932 1.34626 1.45475 0.85111 0.79175 0.77212 0.77835 1.17808 1.20010 1.20024 1.84968 1.05585 1.09135 1.58460 0.82515 0.82516 0.88398 0.88405 0.96027 0.96021 0.91957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -11.35 18.54 20.01 0.37 -10.98 15 2 C 0.24 3.29 15.43 89.44 1.38 4.67 15 3 C 0.00 0.01 5.71 28.79 0.16 0.17 15 4 C -0.12 -1.39 5.50 71.98 0.40 -0.99 15 5 S 0.10 1.34 22.16 -56.49 -1.25 0.08 15 6 C 0.00 -0.01 7.82 130.57 1.02 1.01 15 7 N -0.31 -11.17 11.62 -55.47 -0.64 -11.82 15 8 N -0.33 -14.28 11.62 -55.48 -0.64 -14.92 15 9 C 0.02 0.68 7.82 130.56 1.02 1.70 15 10 S 0.01 0.58 22.08 -56.49 -1.25 -0.67 15 11 C 0.07 3.88 5.30 71.23 0.38 4.26 15 12 C -0.54 -29.82 9.13 25.60 0.23 -29.59 15 13 H 0.08 4.10 7.71 -2.91 -0.02 4.08 15 14 C 0.02 0.91 5.46 84.66 0.46 1.37 15 15 N -0.92 -54.76 13.29 21.45 0.28 -54.48 15 16 Si 0.98 42.18 29.54 68.60 2.03 44.20 15 17 H -0.25 -10.25 7.11 99.48 0.71 -9.54 15 18 H -0.27 -11.47 7.11 99.48 0.71 -10.77 15 19 H -0.27 -11.48 7.11 99.48 0.71 -10.78 15 20 S 0.18 4.90 23.39 -56.49 -1.32 3.57 15 21 H 0.16 -0.42 8.14 -2.39 -0.02 -0.44 15 22 H 0.16 -0.42 8.14 -2.39 -0.02 -0.44 15 23 H 0.10 1.39 8.14 -2.39 -0.02 1.37 15 24 H 0.10 1.39 8.14 -2.39 -0.02 1.37 15 25 H 0.02 1.25 8.14 -2.39 -0.02 1.23 15 26 H 0.02 1.26 8.14 -2.39 -0.02 1.24 15 27 H 0.27 14.97 8.31 -92.71 -0.77 14.20 15 Total: -1.00 -74.74 300.59 3.84 -70.90 By element: Atomic # 1 Polarization: -9.69 SS G_CDS: 1.21 Total: -8.48 kcal Atomic # 6 Polarization: -22.47 SS G_CDS: 5.05 Total: -17.42 kcal Atomic # 7 Polarization: -91.56 SS G_CDS: -0.63 Total: -92.20 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.20 kcal Atomic # 16 Polarization: 6.81 SS G_CDS: -3.82 Total: 2.99 kcal Total: -74.74 3.84 -70.90 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001665067.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.548 kcal (2) G-P(sol) polarization free energy of solvation -74.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds